Wall clock time and date at job start Tue Mar 31 2020 11:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47667 * 2 1 4 4 C 1.50701 * 109.46885 * 239.99753 * 2 1 3 5 5 H 1.08001 * 120.00131 * 244.29266 * 4 2 1 6 6 C 1.37881 * 119.99943 * 64.30070 * 4 2 1 7 7 N 1.31515 * 120.00051 * 195.48088 * 6 4 2 8 8 Si 1.86800 * 120.00013 * 15.47309 * 6 4 2 9 9 H 1.48496 * 109.46955 * 95.61092 * 8 6 4 10 10 H 1.48496 * 109.47026 * 215.61131 * 8 6 4 11 11 H 1.48500 * 109.47036 * 335.60631 * 8 6 4 12 12 C 1.50702 * 109.47169 * 120.00582 * 2 1 3 13 13 O 1.21277 * 120.00538 * 99.98288 * 12 2 1 14 14 N 1.34783 * 119.99303 * 279.98165 * 12 2 1 15 15 C 1.46922 * 120.63170 * 355.28364 * 14 12 2 16 16 C 1.53197 * 108.77300 * 233.58015 * 15 14 12 17 17 C 1.53033 * 109.31392 * 305.36835 * 16 15 14 18 18 C 1.53008 * 109.46154 * 181.38510 * 17 16 15 19 19 C 1.53004 * 109.45870 * 301.35454 * 17 16 15 20 20 C 1.53042 * 109.54317 * 61.36252 * 17 16 15 21 21 H 1.09007 * 109.49225 * 58.61613 * 20 17 16 22 22 C 1.50695 * 109.49904 * 178.68330 * 20 17 16 23 23 C 1.38238 * 120.00014 * 253.55311 * 22 20 17 24 24 C 1.38236 * 120.00004 * 179.76580 * 23 22 20 25 25 C 1.38232 * 119.99626 * 0.51271 * 24 23 22 26 26 C 1.38230 * 120.00368 * 359.74146 * 25 24 23 27 27 C 1.38228 * 119.99969 * 0.02562 * 26 25 24 28 28 C 1.46930 * 120.62733 * 175.00043 * 14 12 2 29 29 H 1.08993 * 109.46906 * 305.59364 * 1 2 3 30 30 H 1.08992 * 109.46890 * 65.59758 * 1 2 3 31 31 H 1.09003 * 109.46838 * 185.59704 * 1 2 3 32 32 H 0.96998 * 120.00336 * 179.97438 * 7 6 4 33 33 H 1.08994 * 109.59002 * 353.37031 * 15 14 12 34 34 H 1.09003 * 109.58653 * 113.65581 * 15 14 12 35 35 H 1.08999 * 109.49350 * 65.31758 * 16 15 14 36 36 H 1.08995 * 109.49973 * 185.37978 * 16 15 14 37 37 H 1.08995 * 109.46886 * 59.99432 * 18 17 16 38 38 H 1.08993 * 109.47346 * 179.97438 * 18 17 16 39 39 H 1.09004 * 109.46445 * 299.99772 * 18 17 16 40 40 H 1.08996 * 109.47177 * 68.25586 * 19 17 16 41 41 H 1.09004 * 109.46786 * 188.25710 * 19 17 16 42 42 H 1.08994 * 109.47292 * 308.25482 * 19 17 16 43 43 H 1.08003 * 119.99665 * 0.02562 * 23 22 20 44 44 H 1.07998 * 119.99913 * 180.23376 * 24 23 22 45 45 H 1.08010 * 119.99552 * 179.72439 * 25 24 23 46 46 H 1.08004 * 120.00168 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.00066 * 179.97438 * 27 26 25 48 48 H 1.09001 * 109.58783 * 246.20568 * 28 14 12 49 49 H 1.09003 * 109.58940 * 6.62702 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5948 -1.6273 -1.1329 6 6 1.7739 -0.1900 -2.4808 7 7 1.9335 -0.9383 -3.5505 8 14 1.1967 1.5780 -2.6555 9 1 2.3627 2.4539 -2.9355 10 1 0.2258 1.6734 -3.7750 11 1 0.5428 2.0121 -1.3949 12 6 2.0324 -0.7105 1.2304 13 8 2.4062 -1.8618 1.1558 14 7 2.0662 -0.0664 2.4138 15 6 1.7148 1.3575 2.5014 16 6 2.8596 2.1063 3.1911 17 6 3.1549 1.4476 4.5405 18 6 4.2747 2.2139 5.2477 19 6 1.8940 1.4730 5.4068 20 6 3.5911 -0.0023 4.3178 21 1 4.4753 -0.0224 3.6806 22 6 3.9126 -0.6403 5.6447 23 6 5.2280 -0.8793 5.9960 24 6 5.5232 -1.4600 7.2152 25 6 4.5025 -1.8115 8.0785 26 6 3.1868 -1.5773 7.7250 27 6 2.8919 -0.9922 6.5079 28 6 2.4492 -0.7764 3.6419 29 1 -0.3633 0.5981 0.8356 30 1 -0.3633 0.4245 -0.9358 31 1 -0.3633 -1.0228 0.1002 32 1 1.7514 -0.5723 -4.4301 33 1 1.5666 1.7596 1.4993 34 1 0.7987 1.4729 3.0806 35 1 3.7503 2.0663 2.5641 36 1 2.5719 3.1458 3.3483 37 1 3.9637 3.2462 5.4074 38 1 4.4848 1.7451 6.2090 39 1 5.1729 2.1963 4.6303 40 1 1.1443 0.8088 4.9768 41 1 2.1393 1.1396 6.4152 42 1 1.5002 2.4886 5.4456 43 1 6.0253 -0.6084 5.3197 44 1 6.5511 -1.6433 7.4913 45 1 4.7329 -2.2693 9.0292 46 1 2.3892 -1.8523 8.3993 47 1 1.8639 -0.8096 6.2315 48 1 1.5931 -0.8313 4.3143 49 1 2.7856 -1.7827 3.3924 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887578837.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:38 Heat of formation + Delta-G solvation = -14.906596 kcal Electronic energy + Delta-G solvation = -27674.431780 eV Core-core repulsion = 24180.010234 eV Total energy + Delta-G solvation = -3494.421546 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -40.83681 -39.02852 -37.60503 -34.19746 -33.75113 -32.59571 -31.19443 -31.10045 -29.19421 -28.04381 -27.50321 -25.14766 -24.30487 -23.32164 -22.64513 -21.71326 -21.33103 -19.14867 -17.73778 -16.98212 -16.84881 -15.94157 -15.55251 -15.40863 -15.25158 -14.88675 -14.57625 -14.23296 -14.07543 -13.91546 -13.46864 -13.28158 -13.16657 -12.76147 -12.62572 -12.36916 -12.26249 -12.12516 -12.04312 -11.85227 -11.54832 -11.52523 -11.40372 -11.23880 -10.98690 -10.88775 -10.77323 -10.52286 -10.41987 -10.34708 -10.18369 -9.64370 -9.19951 -8.98701 -8.78969 -8.60944 -8.41019 -8.07807 -6.07394 -4.02289 1.26512 1.30569 3.24325 3.32366 3.35579 3.51964 3.59128 3.69769 4.40078 4.52226 4.60062 4.70497 4.83970 4.87763 4.94277 5.04621 5.14940 5.20394 5.21158 5.32175 5.39706 5.41602 5.47687 5.57693 5.61327 5.63001 5.70216 5.81850 5.83774 5.89126 5.93129 5.94493 5.98665 6.07057 6.09519 6.20187 6.23669 6.25955 6.35495 6.40131 6.41339 6.48196 6.55366 6.60308 6.81982 6.90688 7.05864 7.23947 7.60684 8.04874 8.54323 9.10628 9.15408 9.55088 11.05645 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.022039 B = 0.003646 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.154837 B = 7678.107877 C = 8145.269593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.002 3.998 3 H 0.043 0.957 4 C -0.510 4.510 5 H 0.088 0.912 6 C 0.075 3.925 7 N -0.888 5.888 8 Si 0.861 3.139 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.255 1.255 12 C 0.531 3.469 13 O -0.533 6.533 14 N -0.626 5.626 15 C 0.106 3.894 16 C -0.126 4.126 17 C -0.052 4.052 18 C -0.139 4.139 19 C -0.152 4.152 20 C -0.054 4.054 21 H 0.083 0.917 22 C -0.061 4.061 23 C -0.114 4.114 24 C -0.120 4.120 25 C -0.129 4.129 26 C -0.121 4.121 27 C -0.116 4.116 28 C 0.119 3.881 29 H 0.028 0.972 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.264 0.736 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.125 0.875 48 H 0.063 0.937 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.027 7.186 23.584 24.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.019 4.019 3 H 0.061 0.939 4 C -0.548 4.548 5 H 0.106 0.894 6 C -0.127 4.127 7 N -0.526 5.526 8 Si 0.688 3.312 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.179 1.179 12 C 0.322 3.678 13 O -0.407 6.407 14 N -0.362 5.362 15 C -0.018 4.018 16 C -0.164 4.164 17 C -0.052 4.052 18 C -0.197 4.197 19 C -0.209 4.209 20 C -0.074 4.074 21 H 0.101 0.899 22 C -0.061 4.061 23 C -0.132 4.132 24 C -0.138 4.138 25 C -0.147 4.147 26 C -0.139 4.139 27 C -0.134 4.134 28 C -0.004 4.004 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.135 0.865 46 H 0.137 0.863 47 H 0.143 0.857 48 H 0.081 0.919 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.206 6.521 23.289 24.285 hybrid contribution -0.208 1.018 -0.208 1.060 sum 1.998 7.539 23.082 24.364 Atomic orbital electron populations 1.22059 0.96615 1.00770 0.99805 1.19229 0.93765 0.96673 0.92248 0.93942 1.20864 1.35714 1.10756 0.87451 0.89383 1.24932 0.94816 0.97215 0.95723 1.69977 1.48833 1.35351 0.98395 0.87216 0.78907 0.86680 0.78417 1.20646 1.21164 1.17922 1.21379 0.75857 0.86915 0.83640 1.90569 1.46843 1.18445 1.84866 1.48296 1.70003 1.10372 1.07489 1.21756 0.96678 0.81105 1.02225 1.22030 0.99690 0.99003 0.95671 1.20443 0.95764 0.93731 0.95254 1.21878 0.97878 0.99578 1.00340 1.22195 0.97131 1.01820 0.99770 1.20673 0.99663 0.94121 0.92912 0.89871 1.19738 0.93214 0.97638 0.95539 1.21083 0.96016 0.99367 0.96731 1.21106 0.99098 0.99224 0.94402 1.21099 0.93052 1.00853 0.99655 1.21122 0.96520 0.99411 0.96860 1.21177 0.99348 0.98804 0.94082 1.21630 0.95744 0.97115 0.85928 0.95334 0.92529 0.92982 0.92644 0.88916 0.91888 0.91168 0.90780 0.92804 0.92459 0.92753 0.92011 0.91986 0.92702 0.86226 0.86347 0.86495 0.86328 0.85700 0.91918 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.33 37.16 0.31 -2.54 16 2 C 0.00 0.06 1.34 -92.92 -0.12 -0.07 16 3 H 0.04 0.94 4.94 -51.93 -0.26 0.69 16 4 C -0.51 -14.76 8.80 -34.44 -0.30 -15.06 16 5 H 0.09 2.92 7.15 -52.49 -0.38 2.55 16 6 C 0.08 2.16 5.33 -17.82 -0.09 2.07 16 7 N -0.89 -27.34 13.96 55.43 0.77 -26.57 16 8 Si 0.86 20.44 25.75 -169.99 -4.38 16.06 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.25 -5.45 5.51 56.52 0.31 -5.14 16 12 C 0.53 11.89 6.84 -10.98 -0.08 11.81 16 13 O -0.53 -14.03 15.09 5.56 0.08 -13.94 16 14 N -0.63 -10.65 2.97 -172.50 -0.51 -11.16 16 15 C 0.11 1.45 5.31 -3.71 -0.02 1.43 16 16 C -0.13 -1.43 4.90 -26.61 -0.13 -1.56 16 17 C -0.05 -0.54 0.54 -154.46 -0.08 -0.62 16 18 C -0.14 -1.31 8.15 37.16 0.30 -1.01 16 19 C -0.15 -1.42 6.28 37.16 0.23 -1.19 16 20 C -0.05 -0.67 1.95 -91.43 -0.18 -0.84 16 21 H 0.08 1.14 7.94 -51.92 -0.41 0.73 16 22 C -0.06 -0.68 3.53 -104.63 -0.37 -1.05 16 23 C -0.11 -1.22 9.24 -39.58 -0.37 -1.58 16 24 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 25 C -0.13 -1.18 10.05 -39.59 -0.40 -1.58 16 26 C -0.12 -1.14 10.05 -39.59 -0.40 -1.54 16 27 C -0.12 -1.20 7.00 -39.59 -0.28 -1.48 16 28 C 0.12 1.76 5.01 -3.49 -0.02 1.74 16 29 H 0.03 0.49 7.51 -51.93 -0.39 0.10 16 30 H 0.06 1.23 5.00 -51.93 -0.26 0.97 16 31 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.09 1.38 5.31 -51.93 -0.28 1.10 16 34 H 0.06 0.75 6.90 -51.93 -0.36 0.39 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.55 6.89 -51.93 -0.36 0.19 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.61 4.78 -51.93 -0.25 0.36 16 41 H 0.06 0.56 5.88 -51.93 -0.31 0.25 16 42 H 0.05 0.46 8.13 -51.93 -0.42 0.04 16 43 H 0.12 1.19 7.99 -52.48 -0.42 0.77 16 44 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 45 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 46 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 47 H 0.13 1.20 5.24 -52.49 -0.27 0.92 16 48 H 0.06 0.82 5.01 -51.93 -0.26 0.56 16 49 H 0.09 1.58 7.00 -51.93 -0.36 1.22 16 LS Contribution 359.01 15.07 5.41 5.41 Total: -1.00 -33.01 359.01 -8.59 -41.60 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.59 Total: 3.23 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -2.39 Total: -14.63 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.26 Total: -37.73 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.08 Total: -13.94 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.38 Total: 16.06 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.01 -8.59 -41.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887578837.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.697 kcal (2) G-P(sol) polarization free energy of solvation -33.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds