Wall clock time and date at job start Tue Mar 31 2020 11:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47667 * 2 1 4 4 C 1.50701 * 109.46885 * 239.99753 * 2 1 3 5 5 H 1.08001 * 120.00131 * 244.29266 * 4 2 1 6 6 C 1.37881 * 119.99943 * 64.30070 * 4 2 1 7 7 N 1.31515 * 120.00051 * 195.48088 * 6 4 2 8 8 Si 1.86800 * 120.00013 * 15.47309 * 6 4 2 9 9 H 1.48496 * 109.46955 * 95.61092 * 8 6 4 10 10 H 1.48496 * 109.47026 * 215.61131 * 8 6 4 11 11 H 1.48500 * 109.47036 * 335.60631 * 8 6 4 12 12 C 1.50702 * 109.47169 * 120.00582 * 2 1 3 13 13 O 1.21277 * 120.00538 * 99.98288 * 12 2 1 14 14 N 1.34783 * 119.99303 * 279.98165 * 12 2 1 15 15 C 1.46922 * 120.63170 * 355.28364 * 14 12 2 16 16 C 1.53197 * 108.77300 * 233.58015 * 15 14 12 17 17 C 1.53033 * 109.31392 * 305.36835 * 16 15 14 18 18 C 1.53008 * 109.46154 * 181.38510 * 17 16 15 19 19 C 1.53004 * 109.45870 * 301.35454 * 17 16 15 20 20 C 1.53042 * 109.54317 * 61.36252 * 17 16 15 21 21 H 1.09007 * 109.49225 * 58.61613 * 20 17 16 22 22 C 1.50695 * 109.49904 * 178.68330 * 20 17 16 23 23 C 1.38238 * 120.00014 * 253.55311 * 22 20 17 24 24 C 1.38236 * 120.00004 * 179.76580 * 23 22 20 25 25 C 1.38232 * 119.99626 * 0.51271 * 24 23 22 26 26 C 1.38230 * 120.00368 * 359.74146 * 25 24 23 27 27 C 1.38228 * 119.99969 * 0.02562 * 26 25 24 28 28 C 1.46930 * 120.62733 * 175.00043 * 14 12 2 29 29 H 1.08993 * 109.46906 * 305.59364 * 1 2 3 30 30 H 1.08992 * 109.46890 * 65.59758 * 1 2 3 31 31 H 1.09003 * 109.46838 * 185.59704 * 1 2 3 32 32 H 0.96998 * 120.00336 * 179.97438 * 7 6 4 33 33 H 1.08994 * 109.59002 * 353.37031 * 15 14 12 34 34 H 1.09003 * 109.58653 * 113.65581 * 15 14 12 35 35 H 1.08999 * 109.49350 * 65.31758 * 16 15 14 36 36 H 1.08995 * 109.49973 * 185.37978 * 16 15 14 37 37 H 1.08995 * 109.46886 * 59.99432 * 18 17 16 38 38 H 1.08993 * 109.47346 * 179.97438 * 18 17 16 39 39 H 1.09004 * 109.46445 * 299.99772 * 18 17 16 40 40 H 1.08996 * 109.47177 * 68.25586 * 19 17 16 41 41 H 1.09004 * 109.46786 * 188.25710 * 19 17 16 42 42 H 1.08994 * 109.47292 * 308.25482 * 19 17 16 43 43 H 1.08003 * 119.99665 * 0.02562 * 23 22 20 44 44 H 1.07998 * 119.99913 * 180.23376 * 24 23 22 45 45 H 1.08010 * 119.99552 * 179.72439 * 25 24 23 46 46 H 1.08004 * 120.00168 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.00066 * 179.97438 * 27 26 25 48 48 H 1.09001 * 109.58783 * 246.20568 * 28 14 12 49 49 H 1.09003 * 109.58940 * 6.62702 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5948 -1.6273 -1.1329 6 6 1.7739 -0.1900 -2.4808 7 7 1.9335 -0.9383 -3.5505 8 14 1.1967 1.5780 -2.6555 9 1 2.3627 2.4539 -2.9355 10 1 0.2258 1.6734 -3.7750 11 1 0.5428 2.0121 -1.3949 12 6 2.0324 -0.7105 1.2304 13 8 2.4062 -1.8618 1.1558 14 7 2.0662 -0.0664 2.4138 15 6 1.7148 1.3575 2.5014 16 6 2.8596 2.1063 3.1911 17 6 3.1549 1.4476 4.5405 18 6 4.2747 2.2139 5.2477 19 6 1.8940 1.4730 5.4068 20 6 3.5911 -0.0023 4.3178 21 1 4.4753 -0.0224 3.6806 22 6 3.9126 -0.6403 5.6447 23 6 5.2280 -0.8793 5.9960 24 6 5.5232 -1.4600 7.2152 25 6 4.5025 -1.8115 8.0785 26 6 3.1868 -1.5773 7.7250 27 6 2.8919 -0.9922 6.5079 28 6 2.4492 -0.7764 3.6419 29 1 -0.3633 0.5981 0.8356 30 1 -0.3633 0.4245 -0.9358 31 1 -0.3633 -1.0228 0.1002 32 1 1.7514 -0.5723 -4.4301 33 1 1.5666 1.7596 1.4993 34 1 0.7987 1.4729 3.0806 35 1 3.7503 2.0663 2.5641 36 1 2.5719 3.1458 3.3483 37 1 3.9637 3.2462 5.4074 38 1 4.4848 1.7451 6.2090 39 1 5.1729 2.1963 4.6303 40 1 1.1443 0.8088 4.9768 41 1 2.1393 1.1396 6.4152 42 1 1.5002 2.4886 5.4456 43 1 6.0253 -0.6084 5.3197 44 1 6.5511 -1.6433 7.4913 45 1 4.7329 -2.2693 9.0292 46 1 2.3892 -1.8523 8.3993 47 1 1.8639 -0.8096 6.2315 48 1 1.5931 -0.8313 4.3143 49 1 2.7856 -1.7827 3.3924 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887578837.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:36 Heat of formation + Delta-G solvation = -34.717107 kcal Electronic energy + Delta-G solvation = -27675.290828 eV Core-core repulsion = 24180.010234 eV Total energy + Delta-G solvation = -3495.280594 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.91016 -40.32143 -38.73989 -35.88221 -35.37437 -33.65957 -33.08542 -31.87788 -30.14886 -29.16542 -28.23659 -27.17213 -25.57910 -24.44837 -23.65520 -23.00881 -22.18962 -20.47566 -18.97703 -18.92075 -17.66642 -17.59313 -17.08303 -16.42416 -16.23493 -16.03495 -15.91243 -15.52221 -15.12925 -14.88652 -14.84901 -14.57280 -14.28330 -14.18838 -14.10160 -13.53754 -13.48312 -13.26134 -13.01018 -12.84354 -12.83042 -12.71500 -12.56390 -12.45673 -12.29882 -12.23625 -12.07650 -11.73179 -11.65409 -11.45411 -11.36569 -11.32547 -11.11118 -10.59432 -10.38964 -9.74588 -9.66769 -9.35676 -8.28920 -6.31999 0.49125 0.54731 1.37699 1.41468 1.52376 1.84649 2.14526 2.37815 2.91611 3.04073 3.62773 3.67579 3.73034 3.96784 4.05270 4.12870 4.18461 4.20367 4.25987 4.33368 4.37177 4.41917 4.49571 4.64713 4.65838 4.70377 4.73244 4.78158 4.80484 4.84846 4.90941 4.94853 5.00508 5.07115 5.09354 5.12027 5.14424 5.21066 5.24200 5.36708 5.44758 5.48271 5.55735 5.58128 5.61102 5.67285 5.74085 5.77906 6.16757 6.24502 6.55166 6.80176 7.27115 7.45491 8.89257 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.022039 B = 0.003646 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.154837 B = 7678.107877 C = 8145.269593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.002 3.998 3 H 0.068 0.932 4 C -0.529 4.529 5 H 0.019 0.981 6 C 0.012 3.988 7 N -0.947 5.947 8 Si 0.940 3.060 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.207 1.207 12 C 0.525 3.475 13 O -0.592 6.592 14 N -0.613 5.613 15 C 0.095 3.905 16 C -0.123 4.123 17 C -0.048 4.048 18 C -0.133 4.133 19 C -0.148 4.148 20 C -0.045 4.045 21 H 0.057 0.943 22 C -0.073 4.073 23 C -0.131 4.131 24 C -0.126 4.126 25 C -0.131 4.131 26 C -0.124 4.124 27 C -0.124 4.124 28 C 0.119 3.881 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.032 0.968 32 H 0.267 0.733 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.045 0.955 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.116 0.884 44 H 0.136 0.864 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.133 0.867 48 H 0.088 0.912 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.305 10.993 26.859 29.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.019 4.019 3 H 0.086 0.914 4 C -0.567 4.567 5 H 0.037 0.963 6 C -0.185 4.185 7 N -0.586 5.586 8 Si 0.761 3.239 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.129 1.129 12 C 0.315 3.685 13 O -0.472 6.472 14 N -0.347 5.347 15 C -0.027 4.027 16 C -0.161 4.161 17 C -0.048 4.048 18 C -0.190 4.190 19 C -0.205 4.205 20 C -0.065 4.065 21 H 0.075 0.925 22 C -0.073 4.073 23 C -0.149 4.149 24 C -0.144 4.144 25 C -0.149 4.149 26 C -0.142 4.142 27 C -0.141 4.141 28 C -0.003 4.003 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.071 0.929 36 H 0.125 0.875 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.134 0.866 44 H 0.153 0.847 45 H 0.158 0.842 46 H 0.159 0.841 47 H 0.150 0.850 48 H 0.106 0.894 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.480 10.372 26.637 28.589 hybrid contribution 0.423 -0.310 -1.158 1.271 sum 0.903 10.061 25.480 27.409 Atomic orbital electron populations 1.21961 0.94331 1.00708 1.01729 1.19172 0.95439 0.96991 0.90299 0.91423 1.21001 1.35739 1.09255 0.90701 0.96251 1.26026 0.94792 1.03068 0.94610 1.70158 1.50785 1.38310 0.99314 0.85971 0.78812 0.78666 0.80432 1.19977 1.20935 1.12919 1.21276 0.75798 0.86273 0.85131 1.90547 1.49715 1.20972 1.85950 1.48242 1.68087 1.11915 1.06420 1.22136 0.99038 0.78559 1.02925 1.22043 0.98085 1.00496 0.95436 1.20438 0.97009 0.92013 0.95344 1.21808 0.97122 1.00274 0.99838 1.22160 0.95953 1.02892 0.99496 1.20525 0.97396 0.95603 0.92949 0.92483 1.19661 0.93823 0.98673 0.95162 1.21196 0.95959 1.00197 0.97527 1.21363 1.00368 0.98710 0.93954 1.21440 0.92850 1.00176 1.00416 1.21433 0.97394 0.98645 0.96753 1.21296 0.99367 0.99050 0.94424 1.21748 0.97691 0.95563 0.85309 0.90485 0.92612 0.94884 0.92378 0.89419 0.88635 0.92924 0.87513 0.91082 0.92637 0.93570 0.92459 0.91573 0.90827 0.86561 0.84661 0.84165 0.84119 0.84967 0.89366 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 8.33 71.98 0.60 -4.62 16 2 C 0.00 0.12 1.34 -12.28 -0.02 0.10 16 3 H 0.07 2.83 4.94 -2.39 -0.01 2.82 16 4 C -0.53 -32.24 8.80 25.60 0.23 -32.02 16 5 H 0.02 1.40 7.15 -2.91 -0.02 1.38 16 6 C 0.01 0.72 5.33 84.66 0.45 1.17 16 7 N -0.95 -61.10 13.96 21.45 0.30 -60.81 16 8 Si 0.94 41.55 25.75 68.60 1.77 43.31 16 9 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.21 -7.54 5.51 99.48 0.55 -6.99 16 12 C 0.52 24.22 6.84 87.66 0.60 24.82 16 13 O -0.59 -33.68 15.09 -3.02 -0.05 -33.72 16 14 N -0.61 -20.53 2.97 -818.06 -2.43 -22.95 16 15 C 0.09 2.27 5.31 86.36 0.46 2.73 16 16 C -0.12 -2.40 4.90 30.67 0.15 -2.25 16 17 C -0.05 -0.88 0.54 -52.15 -0.03 -0.91 16 18 C -0.13 -2.17 8.15 71.98 0.59 -1.58 16 19 C -0.15 -2.17 6.28 71.98 0.45 -1.72 16 20 C -0.05 -1.10 1.95 -11.32 -0.02 -1.12 16 21 H 0.06 1.65 7.94 -2.38 -0.02 1.64 16 22 C -0.07 -1.58 3.53 -19.87 -0.07 -1.65 16 23 C -0.13 -2.77 9.24 22.27 0.21 -2.56 16 24 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 25 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 26 C -0.12 -2.04 10.05 22.27 0.22 -1.81 16 27 C -0.12 -2.33 7.00 22.27 0.16 -2.18 16 28 C 0.12 3.54 5.01 86.51 0.43 3.97 16 29 H 0.08 2.35 7.51 -2.39 -0.02 2.33 16 30 H 0.06 2.24 5.00 -2.39 -0.01 2.23 16 31 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 33 H 0.09 2.23 5.31 -2.39 -0.01 2.21 16 34 H 0.10 1.75 6.90 -2.39 -0.02 1.74 16 35 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.05 0.94 6.89 -2.39 -0.02 0.92 16 39 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.06 0.89 4.78 -2.39 -0.01 0.88 16 41 H 0.07 0.95 5.88 -2.38 -0.01 0.93 16 42 H 0.07 0.84 8.13 -2.39 -0.02 0.82 16 43 H 0.12 2.42 7.99 -2.91 -0.02 2.40 16 44 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 45 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 46 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 47 H 0.13 2.22 5.24 -2.91 -0.02 2.20 16 48 H 0.09 2.17 5.01 -2.39 -0.01 2.16 16 49 H 0.05 1.98 7.00 -2.39 -0.02 1.96 16 Total: -1.00 -80.24 359.01 5.23 -75.01 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.78 Total: 22.67 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: 4.85 Total: -23.51 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -2.13 Total: -83.76 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.05 Total: -33.72 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 1.77 Total: 43.31 kcal Total: -80.24 5.23 -75.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887578837.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.290 kcal (2) G-P(sol) polarization free energy of solvation -80.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds