Wall clock time and date at job start Tue Mar 31 2020 11:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00122 * 2 1 4 4 C 1.53001 * 109.47456 * 124.99923 * 3 2 1 5 5 C 1.52999 * 109.47094 * 180.02562 * 4 3 2 6 6 N 1.46503 * 109.46669 * 179.97438 * 5 4 3 7 7 C 1.46500 * 120.00046 * 269.99626 * 6 5 4 8 8 C 1.53010 * 109.47033 * 270.00337 * 7 6 5 9 9 C 1.34774 * 119.99939 * 90.00216 * 6 5 4 10 10 O 1.21284 * 120.00090 * 359.97438 * 9 6 5 11 11 C 1.50706 * 119.99980 * 179.97438 * 9 6 5 12 12 C 1.52994 * 109.46995 * 179.97438 * 11 9 6 13 13 H 1.08998 * 109.47363 * 54.05802 * 12 11 9 14 14 C 1.50705 * 109.47281 * 294.05789 * 12 11 9 15 15 H 1.07999 * 119.99468 * 330.08103 * 14 12 11 16 16 C 1.37873 * 120.00025 * 150.08844 * 14 12 11 17 17 N 1.31515 * 120.00158 * 6.56401 * 16 14 12 18 18 Si 1.86805 * 119.99647 * 186.56809 * 16 14 12 19 19 H 1.48498 * 109.47129 * 269.99471 * 18 16 14 20 20 H 1.48498 * 109.47291 * 29.99590 * 18 16 14 21 21 H 1.48503 * 109.46813 * 149.99580 * 18 16 14 22 22 C 1.50704 * 109.47072 * 174.05777 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.29986 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38238 * 119.99674 * 0.39266 * 24 23 22 26 26 C 1.38237 * 119.99909 * 359.86442 * 25 24 23 27 27 C 1.38229 * 119.99861 * 359.94762 * 26 25 24 28 28 H 1.07997 * 120.00265 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.00173 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.99959 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.46826 * 4.99842 * 3 2 1 32 32 H 1.08995 * 109.47139 * 245.00293 * 3 2 1 33 33 H 1.08996 * 109.47370 * 59.99616 * 4 3 2 34 34 H 1.09005 * 109.46749 * 300.00321 * 4 3 2 35 35 H 1.08997 * 109.47162 * 59.99935 * 5 4 3 36 36 H 1.08998 * 109.46814 * 299.99499 * 5 4 3 37 37 H 1.09005 * 109.47231 * 29.99977 * 7 6 5 38 38 H 1.08993 * 109.47434 * 150.00596 * 7 6 5 39 39 H 1.09001 * 109.46648 * 60.00133 * 8 7 6 40 40 H 1.09001 * 109.46581 * 179.97438 * 8 7 6 41 41 H 1.08997 * 109.46969 * 300.00187 * 8 7 6 42 42 H 1.08999 * 109.46642 * 59.99829 * 11 9 6 43 43 H 1.09002 * 109.46876 * 299.99722 * 11 9 6 44 44 H 0.96995 * 120.00002 * 354.72529 * 17 16 14 45 45 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 46 46 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 47 47 H 1.08006 * 119.99774 * 179.83158 * 25 24 23 48 48 H 1.08002 * 119.99968 * 179.97438 * 26 25 24 49 49 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3332 1.1816 5 6 3.7996 2.6584 1.1819 6 7 4.7294 2.6855 2.3137 7 6 4.2938 3.2183 3.6070 8 6 4.5831 4.7198 3.6635 9 6 5.9855 2.2202 2.1651 10 8 6.3460 1.7787 1.0946 11 6 6.9422 2.2485 3.3293 12 6 8.2894 1.6668 2.8964 13 1 8.6455 2.1943 2.0115 14 6 8.1253 0.2033 2.5767 15 1 7.3742 -0.3802 3.0882 16 6 8.9342 -0.3908 1.6313 17 7 9.9319 0.2834 1.1023 18 14 8.6128 -2.1531 1.1017 19 1 9.3761 -3.0797 1.9758 20 1 7.1618 -2.4475 1.2157 21 1 9.0452 -2.3331 -0.3076 22 6 9.2883 1.8281 4.0133 23 6 9.0955 1.1699 5.2134 24 6 10.0137 1.3147 6.2365 25 6 11.1206 2.1242 6.0622 26 6 11.3107 2.7867 4.8639 27 6 10.3944 2.6387 3.8396 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6212 1.4026 -0.9314 33 1 3.7399 0.5066 1.0922 34 1 2.4772 1.2356 2.1130 35 1 3.0944 3.4847 1.2717 36 1 4.3573 2.7563 0.2506 37 1 3.2237 3.0498 3.7277 38 1 4.8337 2.7140 4.4083 39 1 4.0431 5.2242 2.8622 40 1 4.2586 5.1163 4.6256 41 1 5.6532 4.8884 3.5428 42 1 6.5362 1.6540 4.1476 43 1 7.0801 3.2775 3.6612 44 1 10.0527 1.2210 1.3193 45 1 8.2287 0.5403 5.3509 46 1 9.8650 0.7974 7.1729 47 1 11.8366 2.2396 6.8626 48 1 12.1752 3.4195 4.7279 49 1 10.5431 3.1560 2.9032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890812734.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:35 Heat of formation + Delta-G solvation = -12.039233 kcal Electronic energy + Delta-G solvation = -26623.729916 eV Core-core repulsion = 23129.432709 eV Total energy + Delta-G solvation = -3494.297207 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.54118 -38.39093 -36.33783 -35.22797 -34.25854 -32.11898 -31.19990 -30.10625 -29.73576 -28.90232 -26.18425 -24.63296 -23.22683 -22.83473 -21.75798 -21.49225 -20.00693 -19.79578 -18.34504 -16.86653 -16.57441 -16.01601 -15.82893 -15.33579 -14.78636 -14.47404 -14.18623 -14.07842 -13.69073 -13.65530 -13.50440 -13.29223 -12.91800 -12.61820 -12.44884 -12.28022 -12.21780 -12.03903 -11.83143 -11.75534 -11.46232 -11.35511 -11.09590 -11.01096 -10.79900 -10.69266 -10.53785 -10.41296 -10.12935 -10.03453 -9.61639 -9.44174 -8.94471 -8.61472 -8.27141 -8.21147 -8.13498 -7.62146 -6.21456 -3.88672 2.19489 2.19766 2.25658 3.41554 3.47198 3.50531 3.56898 3.70079 4.61468 4.67709 4.76099 4.90944 5.00174 5.08599 5.24311 5.30117 5.35134 5.43900 5.50035 5.52178 5.59983 5.63866 5.64237 5.69956 5.76952 5.79930 5.84054 5.88111 5.91309 6.02319 6.11864 6.14848 6.19487 6.24857 6.32525 6.39314 6.44219 6.54909 6.69267 6.70825 6.79415 6.92444 7.00414 7.21427 7.23261 7.39251 7.73419 7.86324 7.92939 8.24777 8.52970 8.98701 9.02914 9.80441 11.19031 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011617 B = 0.004213 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.685884 B = 6644.124485 C = 8295.920553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.144 4.144 3 C -0.092 4.092 4 C -0.130 4.130 5 C 0.120 3.880 6 N -0.630 5.630 7 C 0.109 3.891 8 C -0.171 4.171 9 C 0.516 3.484 10 O -0.497 6.497 11 C -0.115 4.115 12 C 0.072 3.928 13 H 0.050 0.950 14 C -0.565 4.565 15 H 0.044 0.956 16 C 0.033 3.967 17 N -0.907 5.907 18 Si 1.065 2.935 19 H -0.291 1.291 20 H -0.290 1.290 21 H -0.285 1.285 22 C -0.030 4.030 23 C -0.109 4.109 24 C -0.129 4.129 25 C -0.153 4.153 26 C -0.124 4.124 27 C -0.130 4.130 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.270 0.730 45 H 0.114 0.886 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.107 0.893 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.264 6.944 5.746 16.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.162 4.162 3 C -0.130 4.130 4 C -0.169 4.169 5 C -0.003 4.003 6 N -0.367 5.367 7 C -0.015 4.015 8 C -0.229 4.229 9 C 0.304 3.696 10 O -0.368 6.368 11 C -0.155 4.155 12 C 0.052 3.948 13 H 0.068 0.932 14 C -0.603 4.603 15 H 0.063 0.937 16 C -0.173 4.173 17 N -0.542 5.542 18 Si 0.894 3.106 19 H -0.219 1.219 20 H -0.217 1.217 21 H -0.211 1.211 22 C -0.030 4.030 23 C -0.127 4.127 24 C -0.147 4.147 25 C -0.172 4.172 26 C -0.142 4.142 27 C -0.149 4.149 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.127 0.873 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.132 0.868 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.445 5.466 4.179 14.220 hybrid contribution -0.619 1.079 1.110 1.667 sum -13.064 6.545 5.289 15.539 Atomic orbital electron populations 1.23784 0.95907 1.01524 1.03015 1.23044 0.95976 0.98917 0.98225 1.20710 0.97934 0.95047 0.99304 1.21908 0.97952 0.99397 0.97659 1.21292 0.91775 0.96364 0.90883 1.48178 1.12654 1.64550 1.11330 1.21425 1.00123 0.93919 0.85997 1.22226 1.02559 0.96540 1.01624 1.20873 0.81269 0.76545 0.90870 1.90735 1.75847 1.42204 1.28042 1.21719 0.97319 1.00418 0.96015 1.17883 0.87128 0.98204 0.91554 0.93173 1.21529 1.21554 0.93151 1.24059 0.93738 1.25553 0.92703 1.05558 0.93479 1.70723 1.27431 1.10780 1.45303 0.83614 0.75332 0.74961 0.76660 1.21855 1.21671 1.21110 1.20831 0.96326 0.91065 0.94821 1.20909 0.99371 0.99270 0.93109 1.21007 0.95449 0.99529 0.98754 1.20820 0.98544 1.00273 0.97522 1.20962 0.98854 1.00361 0.94044 1.21066 0.95561 0.99930 0.98308 0.88816 0.88768 0.87329 0.91752 0.90659 0.90865 0.92199 0.91624 0.90153 0.91142 0.90313 0.92696 0.91909 0.92154 0.90449 0.91782 0.91840 0.86794 0.87470 0.87602 0.87483 0.87206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.97 14.32 29.02 0.42 -1.55 16 2 C -0.14 -1.58 9.52 -36.02 -0.34 -1.92 16 3 C -0.09 -1.02 5.66 -27.88 -0.16 -1.18 16 4 C -0.13 -1.71 5.52 -26.73 -0.15 -1.86 16 5 C 0.12 1.63 5.41 -4.04 -0.02 1.61 16 6 N -0.63 -9.65 2.47 -173.68 -0.43 -10.08 16 7 C 0.11 1.26 5.93 -4.04 -0.02 1.24 16 8 C -0.17 -1.75 10.24 37.16 0.38 -1.37 16 9 C 0.52 10.40 7.43 -10.98 -0.08 10.32 16 10 O -0.50 -12.42 14.60 5.55 0.08 -12.34 16 11 C -0.11 -2.25 3.49 -27.88 -0.10 -2.34 16 12 C 0.07 1.71 1.31 -92.92 -0.12 1.59 16 13 H 0.05 1.36 6.23 -51.93 -0.32 1.04 16 14 C -0.57 -15.41 6.40 -34.44 -0.22 -15.63 16 15 H 0.04 1.22 7.82 -52.49 -0.41 0.81 16 16 C 0.03 0.94 5.45 -17.82 -0.10 0.85 16 17 N -0.91 -27.82 13.63 55.43 0.76 -27.07 16 18 Si 1.06 26.58 29.91 -169.99 -5.08 21.50 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 C -0.03 -0.66 4.77 -104.62 -0.50 -1.16 16 23 C -0.11 -2.22 8.88 -39.59 -0.35 -2.57 16 24 C -0.13 -2.33 10.05 -39.59 -0.40 -2.73 16 25 C -0.15 -2.67 10.05 -39.58 -0.40 -3.07 16 26 C -0.12 -2.29 10.05 -39.59 -0.40 -2.68 16 27 C -0.13 -2.74 9.67 -39.59 -0.38 -3.13 16 28 H 0.09 0.80 7.84 -52.49 -0.41 0.39 16 29 H 0.09 0.81 8.06 -52.48 -0.42 0.38 16 30 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.06 0.61 7.79 -51.93 -0.40 0.20 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 36 H 0.08 1.26 7.42 -51.93 -0.39 0.87 16 37 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 38 H 0.08 0.92 6.44 -51.93 -0.33 0.58 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.71 7.22 -51.93 -0.37 0.34 16 42 H 0.08 1.43 7.12 -51.93 -0.37 1.06 16 43 H 0.06 1.11 7.18 -51.93 -0.37 0.74 16 44 H 0.27 8.20 6.68 -40.82 -0.27 7.93 16 45 H 0.11 2.27 7.80 -52.48 -0.41 1.86 16 46 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 47 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 48 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 49 H 0.11 2.28 7.95 -52.49 -0.42 1.87 16 LS Contribution 400.71 15.07 6.04 6.04 Total: -1.00 -32.82 400.71 -9.93 -42.75 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -8.35 Total: 4.79 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -2.94 Total: -25.59 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.33 Total: -37.14 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.08 Total: -12.34 kcal Atomic # 14 Polarization: 26.58 SS G_CDS: -5.08 Total: 21.50 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.82 -9.93 -42.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890812734.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.709 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds