Wall clock time and date at job start Tue Mar 31 2020 11:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00122 * 2 1 4 4 C 1.53001 * 109.47456 * 124.99923 * 3 2 1 5 5 C 1.52999 * 109.47094 * 180.02562 * 4 3 2 6 6 N 1.46503 * 109.46669 * 179.97438 * 5 4 3 7 7 C 1.46500 * 120.00046 * 269.99626 * 6 5 4 8 8 C 1.53010 * 109.47033 * 270.00337 * 7 6 5 9 9 C 1.34774 * 119.99939 * 90.00216 * 6 5 4 10 10 O 1.21284 * 120.00090 * 359.97438 * 9 6 5 11 11 C 1.50706 * 119.99980 * 179.97438 * 9 6 5 12 12 C 1.52994 * 109.46995 * 179.97438 * 11 9 6 13 13 H 1.08998 * 109.47363 * 54.05802 * 12 11 9 14 14 C 1.50705 * 109.47281 * 294.05789 * 12 11 9 15 15 H 1.07999 * 119.99468 * 330.08103 * 14 12 11 16 16 C 1.37873 * 120.00025 * 150.08844 * 14 12 11 17 17 N 1.31515 * 120.00158 * 6.56401 * 16 14 12 18 18 Si 1.86805 * 119.99647 * 186.56809 * 16 14 12 19 19 H 1.48498 * 109.47129 * 269.99471 * 18 16 14 20 20 H 1.48498 * 109.47291 * 29.99590 * 18 16 14 21 21 H 1.48503 * 109.46813 * 149.99580 * 18 16 14 22 22 C 1.50704 * 109.47072 * 174.05777 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.29986 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38238 * 119.99674 * 0.39266 * 24 23 22 26 26 C 1.38237 * 119.99909 * 359.86442 * 25 24 23 27 27 C 1.38229 * 119.99861 * 359.94762 * 26 25 24 28 28 H 1.07997 * 120.00265 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.00173 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.99959 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.46826 * 4.99842 * 3 2 1 32 32 H 1.08995 * 109.47139 * 245.00293 * 3 2 1 33 33 H 1.08996 * 109.47370 * 59.99616 * 4 3 2 34 34 H 1.09005 * 109.46749 * 300.00321 * 4 3 2 35 35 H 1.08997 * 109.47162 * 59.99935 * 5 4 3 36 36 H 1.08998 * 109.46814 * 299.99499 * 5 4 3 37 37 H 1.09005 * 109.47231 * 29.99977 * 7 6 5 38 38 H 1.08993 * 109.47434 * 150.00596 * 7 6 5 39 39 H 1.09001 * 109.46648 * 60.00133 * 8 7 6 40 40 H 1.09001 * 109.46581 * 179.97438 * 8 7 6 41 41 H 1.08997 * 109.46969 * 300.00187 * 8 7 6 42 42 H 1.08999 * 109.46642 * 59.99829 * 11 9 6 43 43 H 1.09002 * 109.46876 * 299.99722 * 11 9 6 44 44 H 0.96995 * 120.00002 * 354.72529 * 17 16 14 45 45 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 46 46 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 47 47 H 1.08006 * 119.99774 * 179.83158 * 25 24 23 48 48 H 1.08002 * 119.99968 * 179.97438 * 26 25 24 49 49 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3332 1.1816 5 6 3.7996 2.6584 1.1819 6 7 4.7294 2.6855 2.3137 7 6 4.2938 3.2183 3.6070 8 6 4.5831 4.7198 3.6635 9 6 5.9855 2.2202 2.1651 10 8 6.3460 1.7787 1.0946 11 6 6.9422 2.2485 3.3293 12 6 8.2894 1.6668 2.8964 13 1 8.6455 2.1943 2.0115 14 6 8.1253 0.2033 2.5767 15 1 7.3742 -0.3802 3.0882 16 6 8.9342 -0.3908 1.6313 17 7 9.9319 0.2834 1.1023 18 14 8.6128 -2.1531 1.1017 19 1 9.3761 -3.0797 1.9758 20 1 7.1618 -2.4475 1.2157 21 1 9.0452 -2.3331 -0.3076 22 6 9.2883 1.8281 4.0133 23 6 9.0955 1.1699 5.2134 24 6 10.0137 1.3147 6.2365 25 6 11.1206 2.1242 6.0622 26 6 11.3107 2.7867 4.8639 27 6 10.3944 2.6387 3.8396 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6212 1.4026 -0.9314 33 1 3.7399 0.5066 1.0922 34 1 2.4772 1.2356 2.1130 35 1 3.0944 3.4847 1.2717 36 1 4.3573 2.7563 0.2506 37 1 3.2237 3.0498 3.7277 38 1 4.8337 2.7140 4.4083 39 1 4.0431 5.2242 2.8622 40 1 4.2586 5.1163 4.6256 41 1 5.6532 4.8884 3.5428 42 1 6.5362 1.6540 4.1476 43 1 7.0801 3.2775 3.6612 44 1 10.0527 1.2210 1.3193 45 1 8.2287 0.5403 5.3509 46 1 9.8650 0.7974 7.1729 47 1 11.8366 2.2396 6.8626 48 1 12.1752 3.4195 4.7279 49 1 10.5431 3.1560 2.9032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890812734.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:32 Heat of formation + Delta-G solvation = -28.430904 kcal Electronic energy + Delta-G solvation = -26624.440712 eV Core-core repulsion = 23129.432709 eV Total energy + Delta-G solvation = -3495.008004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.04521 -39.91208 -37.58065 -36.32942 -36.08526 -33.47443 -32.79851 -31.61791 -30.86685 -30.34675 -27.62596 -26.27063 -24.69934 -24.09875 -23.22295 -22.74005 -21.59108 -20.72627 -19.76912 -18.69511 -18.15314 -17.30241 -17.24315 -16.33853 -16.27946 -15.94792 -15.69089 -15.61871 -15.24727 -14.89702 -14.73478 -14.47315 -14.34344 -14.05943 -13.96444 -13.78148 -13.42750 -13.34947 -13.18211 -12.89062 -12.79936 -12.68526 -12.62961 -12.30507 -12.12149 -12.00583 -11.91058 -11.82498 -11.73879 -11.63770 -11.45329 -10.69279 -10.61890 -10.32366 -10.23905 -9.65100 -9.53801 -9.27765 -8.46458 -6.11640 0.66889 0.73308 1.38255 1.43946 1.56221 1.69447 1.88773 2.17363 2.58361 3.09725 3.36743 3.75406 3.87871 4.03611 4.08634 4.12499 4.25471 4.28003 4.28846 4.31948 4.37132 4.44709 4.45136 4.51361 4.56646 4.60575 4.64837 4.72751 4.79455 4.84151 4.91298 4.91941 4.96674 5.04592 5.10986 5.18404 5.22614 5.30703 5.38133 5.40012 5.41619 5.72856 5.73702 5.80133 5.82156 5.88168 5.93496 6.23217 6.29538 6.38013 6.54969 6.77299 7.48866 7.63722 8.93980 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011617 B = 0.004213 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.685884 B = 6644.124485 C = 8295.920553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.172 4.172 3 C -0.085 4.085 4 C -0.120 4.120 5 C 0.118 3.882 6 N -0.620 5.620 7 C 0.100 3.900 8 C -0.166 4.166 9 C 0.510 3.490 10 O -0.561 6.561 11 C -0.105 4.105 12 C 0.074 3.926 13 H 0.004 0.996 14 C -0.553 4.553 15 H 0.036 0.964 16 C -0.024 4.024 17 N -0.942 5.942 18 Si 1.099 2.901 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.291 1.291 22 C -0.054 4.054 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.144 4.144 26 C -0.124 4.124 27 C -0.154 4.154 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.027 0.973 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.051 0.949 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.090 0.910 41 H 0.038 0.962 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.257 0.743 45 H 0.113 0.887 46 H 0.144 0.856 47 H 0.148 0.852 48 H 0.135 0.865 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.152 7.691 8.920 19.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.190 4.190 3 C -0.123 4.123 4 C -0.159 4.159 5 C -0.005 4.005 6 N -0.355 5.355 7 C -0.021 4.021 8 C -0.224 4.224 9 C 0.299 3.701 10 O -0.438 6.438 11 C -0.145 4.145 12 C 0.055 3.945 13 H 0.023 0.977 14 C -0.591 4.591 15 H 0.054 0.946 16 C -0.222 4.222 17 N -0.581 5.581 18 Si 0.925 3.075 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.217 1.217 22 C -0.055 4.055 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.162 4.162 26 C -0.142 4.142 27 C -0.172 4.172 28 H 0.129 0.871 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.125 0.875 36 H 0.070 0.930 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.109 0.891 41 H 0.057 0.943 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.068 0.932 45 H 0.131 0.869 46 H 0.161 0.839 47 H 0.165 0.835 48 H 0.153 0.847 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.386 6.240 7.411 17.344 hybrid contribution -0.135 0.955 0.230 0.992 sum -14.522 7.195 7.641 17.917 Atomic orbital electron populations 1.24006 0.95207 1.02875 1.00000 1.22994 0.96717 0.98312 1.01004 1.20646 0.97758 0.96208 0.97658 1.21790 0.97419 0.97220 0.99480 1.21458 0.91667 0.98221 0.89138 1.48193 1.11188 1.62730 1.13351 1.21781 1.01975 0.94704 0.83679 1.22178 1.01336 0.95389 1.03476 1.21017 0.82903 0.76219 0.89974 1.90710 1.77445 1.45542 1.30113 1.21570 0.95197 1.01582 0.96136 1.17698 0.89867 0.95955 0.90990 0.97727 1.21761 1.19856 0.94722 1.22786 0.94571 1.26695 0.92841 1.08566 0.94136 1.70813 1.29422 1.10443 1.47422 0.83162 0.75889 0.72169 0.76330 1.19741 1.20711 1.21704 1.20611 0.96406 0.93251 0.95235 1.20991 1.00463 0.99464 0.93251 1.21407 0.94533 0.98957 0.99191 1.21313 0.98654 0.98417 0.97816 1.21295 0.98800 1.00459 0.93643 1.21118 0.96439 1.00803 0.98885 0.87078 0.87728 0.88832 0.89071 0.91944 0.95356 0.90647 0.87455 0.93046 0.87921 0.90323 0.92054 0.89126 0.94258 0.89070 0.89576 0.93175 0.86927 0.83851 0.83463 0.84708 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 14.32 67.79 0.97 -2.14 16 2 C -0.17 -3.69 9.52 25.65 0.24 -3.45 16 3 C -0.09 -1.83 5.66 29.85 0.17 -1.66 16 4 C -0.12 -3.16 5.52 30.59 0.17 -2.99 16 5 C 0.12 3.17 5.41 86.38 0.47 3.64 16 6 N -0.62 -18.91 2.47 -821.79 -2.03 -20.95 16 7 C 0.10 2.09 5.93 86.38 0.51 2.60 16 8 C -0.17 -2.97 10.24 71.99 0.74 -2.23 16 9 C 0.51 21.55 7.43 87.66 0.65 22.20 16 10 O -0.56 -30.30 14.60 -3.04 -0.04 -30.35 16 11 C -0.10 -4.26 3.49 29.85 0.10 -4.15 16 12 C 0.07 3.77 1.31 -12.29 -0.02 3.75 16 13 H 0.00 0.27 6.23 -2.39 -0.01 0.25 16 14 C -0.55 -31.65 6.40 25.60 0.16 -31.48 16 15 H 0.04 2.07 7.82 -2.91 -0.02 2.04 16 16 C -0.02 -1.46 5.45 84.65 0.46 -1.00 16 17 N -0.94 -61.30 13.63 21.45 0.29 -61.01 16 18 Si 1.10 55.58 29.91 68.60 2.05 57.63 16 19 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 21 H -0.29 -14.85 7.11 99.48 0.71 -14.14 16 22 C -0.05 -2.49 4.77 -19.87 -0.09 -2.58 16 23 C -0.12 -4.96 8.88 22.27 0.20 -4.76 16 24 C -0.12 -4.05 10.05 22.27 0.22 -3.83 16 25 C -0.14 -4.49 10.05 22.27 0.22 -4.26 16 26 C -0.12 -4.36 10.05 22.27 0.22 -4.14 16 27 C -0.15 -6.67 9.67 22.27 0.22 -6.45 16 28 H 0.11 1.50 7.84 -2.91 -0.02 1.48 16 29 H 0.10 1.54 8.06 -2.91 -0.02 1.52 16 30 H 0.09 2.24 8.06 -2.91 -0.02 2.21 16 31 H 0.09 1.47 7.79 -2.39 -0.02 1.45 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.11 2.02 8.07 -2.39 -0.02 2.00 16 36 H 0.05 1.70 7.42 -2.39 -0.02 1.69 16 37 H 0.10 1.54 8.07 -2.38 -0.02 1.53 16 38 H 0.08 1.67 6.44 -2.39 -0.02 1.65 16 39 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.04 0.87 7.22 -2.39 -0.02 0.86 16 42 H 0.09 3.40 7.12 -2.39 -0.02 3.38 16 43 H 0.09 3.06 7.18 -2.39 -0.02 3.04 16 44 H 0.26 16.89 6.68 -92.71 -0.62 16.27 16 45 H 0.11 4.44 7.80 -2.91 -0.02 4.41 16 46 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 47 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 48 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 49 H 0.09 4.21 7.95 -2.91 -0.02 4.19 16 Total: -1.00 -78.43 400.71 6.93 -71.50 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 1.04 Total: 26.11 kcal Atomic # 6 Polarization: -48.56 SS G_CDS: 5.62 Total: -42.94 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -1.74 Total: -81.96 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.04 Total: -30.35 kcal Atomic # 14 Polarization: 55.58 SS G_CDS: 2.05 Total: 57.63 kcal Total: -78.43 6.93 -71.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890812734.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.066 kcal (2) G-P(sol) polarization free energy of solvation -78.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds