Wall clock time and date at job start Tue Mar 31 2020 11:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50702 * 119.99753 * 2 1 4 4 C 1.53000 * 109.47154 * 125.00088 * 3 2 1 5 5 C 1.52997 * 109.47196 * 179.97438 * 4 3 2 6 6 N 1.46496 * 109.47248 * 180.02562 * 5 4 3 7 7 C 1.46498 * 119.99639 * 269.99767 * 6 5 4 8 8 C 1.53004 * 109.47278 * 269.99914 * 7 6 5 9 9 C 1.34777 * 120.00284 * 90.00008 * 6 5 4 10 10 O 1.21283 * 119.99533 * 0.02562 * 9 6 5 11 11 C 1.50697 * 120.00098 * 180.27403 * 9 6 5 12 12 C 1.52997 * 109.47147 * 179.72332 * 11 9 6 13 13 H 1.09003 * 109.47281 * 305.36877 * 12 11 9 14 14 C 1.50700 * 109.46925 * 65.37096 * 12 11 9 15 15 H 1.07995 * 120.00133 * 34.62150 * 14 12 11 16 16 C 1.37882 * 119.99824 * 214.61982 * 14 12 11 17 17 N 1.31515 * 120.00108 * 186.44849 * 16 14 12 18 18 Si 1.86801 * 119.99993 * 6.44664 * 16 14 12 19 19 H 1.48494 * 109.46937 * 85.01165 * 18 16 14 20 20 H 1.48505 * 109.46985 * 205.00839 * 18 16 14 21 21 H 1.48495 * 109.47016 * 325.01014 * 18 16 14 22 22 C 1.50694 * 109.47321 * 185.37035 * 12 11 9 23 23 C 1.38237 * 120.00015 * 296.35946 * 22 12 11 24 24 C 1.38241 * 120.00027 * 179.78827 * 23 22 12 25 25 C 1.38231 * 119.99919 * 0.43656 * 24 23 22 26 26 C 1.38241 * 119.99902 * 359.81911 * 25 24 23 27 27 C 1.38234 * 120.00048 * 116.63142 * 22 12 11 28 28 H 1.07997 * 119.99679 * 359.97438 * 1 2 3 29 29 H 1.07994 * 119.99692 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.00451 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47059 * 4.99577 * 3 2 1 32 32 H 1.09005 * 109.46829 * 245.00189 * 3 2 1 33 33 H 1.08998 * 109.46866 * 59.99918 * 4 3 2 34 34 H 1.08997 * 109.47114 * 300.00014 * 4 3 2 35 35 H 1.09005 * 109.47402 * 59.99417 * 5 4 3 36 36 H 1.09005 * 109.46935 * 300.00192 * 5 4 3 37 37 H 1.09002 * 109.47656 * 30.00301 * 7 6 5 38 38 H 1.09007 * 109.46890 * 150.00250 * 7 6 5 39 39 H 1.08994 * 109.47166 * 60.00400 * 8 7 6 40 40 H 1.09001 * 109.46679 * 180.02562 * 8 7 6 41 41 H 1.09001 * 109.46651 * 299.99889 * 8 7 6 42 42 H 1.08998 * 109.47190 * 299.72327 * 11 9 6 43 43 H 1.09007 * 109.47079 * 59.72625 * 11 9 6 44 44 H 0.96998 * 120.00572 * 179.97438 * 17 16 14 45 45 H 1.07998 * 120.00221 * 359.97438 * 23 22 12 46 46 H 1.07993 * 120.00110 * 180.27600 * 24 23 22 47 47 H 1.07997 * 120.00305 * 179.83493 * 25 24 23 48 48 H 1.07999 * 119.99476 * 179.97438 * 26 25 24 49 49 H 1.08000 * 120.00387 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3332 1.1816 5 6 3.8004 2.6579 1.1812 6 7 4.7311 2.6845 2.3123 7 6 4.2968 3.2178 3.6058 8 6 4.5871 4.7190 3.6619 9 6 5.9869 2.2184 2.1628 10 8 6.3465 1.7774 1.0918 11 6 6.9423 2.2401 3.3280 12 6 8.2874 1.6531 2.8956 13 1 8.1317 0.6604 2.4730 14 6 8.9157 2.5477 1.8583 15 1 8.7800 3.6176 1.9143 16 6 9.6638 2.0002 0.8377 17 7 10.3162 2.7838 0.0071 18 14 9.7508 0.1453 0.6347 19 1 8.5866 -0.3208 -0.1606 20 1 11.0076 -0.2174 -0.0684 21 1 9.7275 -0.5006 1.9717 22 6 9.1993 1.5527 4.0911 23 6 9.6034 2.6985 4.7503 24 6 10.4365 2.6061 5.8497 25 6 10.8726 1.3685 6.2842 26 6 10.4728 0.2229 5.6217 27 6 9.6363 0.3151 4.5250 28 1 -0.5399 0.9353 0.0004 29 1 -0.5399 -0.9353 0.0004 30 1 1.8501 -0.9352 0.0004 31 1 1.3585 2.1317 0.0895 32 1 2.6213 1.4026 -0.9315 33 1 3.7400 0.5067 1.0920 34 1 2.4773 1.2356 2.1130 35 1 3.0958 3.4848 1.2705 36 1 4.3583 2.7550 0.2498 37 1 3.2267 3.0499 3.7273 38 1 4.8371 2.7131 4.4068 39 1 4.0469 5.2238 2.8611 40 1 4.2643 5.1156 4.6246 41 1 5.6572 4.8869 3.5405 42 1 7.0849 3.2678 3.6619 43 1 6.5325 1.6461 4.1450 44 1 10.8428 2.3987 -0.7107 45 1 9.2659 3.6658 4.4084 46 1 10.7486 3.5010 6.3674 47 1 11.5256 1.2964 7.1414 48 1 10.8139 -0.7439 5.9610 49 1 9.3238 -0.5799 4.0076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890812735.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:41 Heat of formation + Delta-G solvation = -6.602919 kcal Electronic energy + Delta-G solvation = -26610.402718 eV Core-core repulsion = 23116.341247 eV Total energy + Delta-G solvation = -3494.061471 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -39.55878 -38.46177 -36.36695 -35.23414 -34.10864 -32.10559 -31.54922 -30.19102 -29.72294 -28.96530 -26.59008 -25.07536 -23.20401 -22.60899 -21.92038 -21.54341 -19.97987 -19.58682 -18.19918 -16.94448 -16.72886 -15.97364 -15.92204 -15.36175 -14.82290 -14.65841 -14.27343 -14.11130 -13.80341 -13.64433 -13.51397 -13.09899 -12.88515 -12.70245 -12.58672 -12.33705 -12.24581 -12.02915 -11.89333 -11.79165 -11.66235 -11.38213 -11.06781 -11.01832 -10.89383 -10.74962 -10.59742 -10.50647 -10.31688 -9.83172 -9.58394 -9.48634 -9.16588 -8.85160 -8.38817 -8.22243 -8.18642 -7.79668 -5.96222 -3.92494 2.11521 2.14632 2.16759 3.41095 3.45978 3.46384 3.50410 3.55141 4.54268 4.60606 4.72180 4.89341 5.01004 5.07665 5.25227 5.26737 5.32908 5.42045 5.46991 5.49344 5.53522 5.57522 5.60904 5.69931 5.71087 5.81980 5.84858 5.89660 5.91946 5.95848 6.06365 6.10617 6.20123 6.23473 6.28766 6.33938 6.37384 6.49730 6.63389 6.65544 6.71231 6.84366 6.97949 7.05400 7.15991 7.29226 7.59852 7.74404 7.84748 7.93019 8.55248 9.00198 9.03644 9.69362 11.16769 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012257 B = 0.003976 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.782883 B = 7041.287008 C = 7906.418779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C -0.093 4.093 4 C -0.128 4.128 5 C 0.118 3.882 6 N -0.629 5.629 7 C 0.110 3.890 8 C -0.173 4.173 9 C 0.516 3.484 10 O -0.499 6.499 11 C -0.116 4.116 12 C 0.056 3.944 13 H 0.048 0.952 14 C -0.486 4.486 15 H 0.070 0.930 16 C 0.086 3.914 17 N -0.899 5.899 18 Si 0.872 3.128 19 H -0.273 1.273 20 H -0.297 1.297 21 H -0.261 1.261 22 C -0.037 4.037 23 C -0.102 4.102 24 C -0.127 4.127 25 C -0.150 4.150 26 C -0.126 4.126 27 C -0.137 4.137 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.262 0.738 45 H 0.119 0.881 46 H 0.110 0.890 47 H 0.107 0.893 48 H 0.108 0.892 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.809 -1.162 9.044 17.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.162 4.162 3 C -0.131 4.131 4 C -0.167 4.167 5 C -0.005 4.005 6 N -0.366 5.366 7 C -0.014 4.014 8 C -0.231 4.231 9 C 0.305 3.695 10 O -0.370 6.370 11 C -0.156 4.156 12 C 0.036 3.964 13 H 0.066 0.934 14 C -0.523 4.523 15 H 0.088 0.912 16 C -0.116 4.116 17 N -0.537 5.537 18 Si 0.701 3.299 19 H -0.198 1.198 20 H -0.223 1.223 21 H -0.186 1.186 22 C -0.038 4.038 23 C -0.120 4.120 24 C -0.145 4.145 25 C -0.168 4.168 26 C -0.144 4.144 27 C -0.155 4.155 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.125 0.875 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.137 0.863 46 H 0.128 0.872 47 H 0.125 0.875 48 H 0.126 0.874 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.454 -1.398 8.268 16.710 hybrid contribution 0.182 -0.906 -0.223 0.950 sum -14.272 -2.304 8.045 16.545 Atomic orbital electron populations 1.23798 0.95922 1.01574 1.02832 1.23030 0.95974 0.98832 0.98413 1.20721 0.97999 0.95063 0.99338 1.21895 0.97833 0.99302 0.97694 1.21314 0.91826 0.96248 0.91123 1.48145 1.12512 1.64560 1.11368 1.21434 0.99980 0.94163 0.85816 1.22234 1.03004 0.96352 1.01541 1.20833 0.80967 0.76926 0.90777 1.90729 1.75103 1.43452 1.27743 1.21720 0.96210 1.02624 0.95047 1.18132 0.88648 0.98372 0.91231 0.93381 1.20563 1.30831 0.93725 1.07177 0.91185 1.24872 0.94079 0.97475 0.95185 1.69894 1.30936 1.35192 1.17675 0.86942 0.76943 0.87220 0.78840 1.19824 1.22345 1.18610 1.20747 0.97074 0.91944 0.94052 1.20952 0.97718 0.98703 0.94587 1.21045 0.98890 0.96877 0.97731 1.20855 1.02143 0.93012 1.00799 1.20964 0.99050 0.97697 0.96730 1.21152 0.99709 0.97665 0.96943 0.88736 0.88786 0.87468 0.91612 0.90590 0.91277 0.92176 0.91502 0.89881 0.91201 0.90364 0.92658 0.91997 0.91761 0.89792 0.91545 0.92881 0.86335 0.87218 0.87454 0.87414 0.87067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.83 14.32 29.01 0.42 -1.42 16 2 C -0.14 -1.48 9.52 -36.03 -0.34 -1.82 16 3 C -0.09 -0.99 5.66 -27.88 -0.16 -1.14 16 4 C -0.13 -1.57 5.52 -26.73 -0.15 -1.71 16 5 C 0.12 1.60 5.41 -4.05 -0.02 1.58 16 6 N -0.63 -9.46 2.47 -173.68 -0.43 -9.89 16 7 C 0.11 1.23 5.94 -4.04 -0.02 1.21 16 8 C -0.17 -1.85 10.24 37.16 0.38 -1.47 16 9 C 0.52 10.17 7.42 -10.99 -0.08 10.09 16 10 O -0.50 -12.23 14.57 5.55 0.08 -12.15 16 11 C -0.12 -2.17 3.49 -27.89 -0.10 -2.27 16 12 C 0.06 1.27 1.28 -92.93 -0.12 1.15 16 13 H 0.05 1.18 4.79 -51.93 -0.25 0.93 16 14 C -0.49 -13.39 6.94 -34.44 -0.24 -13.63 16 15 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 16 C 0.09 2.54 5.47 -17.82 -0.10 2.45 16 17 N -0.90 -28.24 13.96 55.43 0.77 -27.46 16 18 Si 0.87 22.98 27.04 -169.99 -4.60 18.38 16 19 H -0.27 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 21 H -0.26 -6.38 5.15 56.52 0.29 -6.09 16 22 C -0.04 -0.79 4.77 -104.63 -0.50 -1.29 16 23 C -0.10 -1.98 8.87 -39.58 -0.35 -2.33 16 24 C -0.13 -2.18 10.05 -39.58 -0.40 -2.57 16 25 C -0.15 -2.45 10.05 -39.58 -0.40 -2.85 16 26 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 27 C -0.14 -2.71 9.13 -39.58 -0.36 -3.07 16 28 H 0.09 0.77 7.84 -52.49 -0.41 0.35 16 29 H 0.09 0.74 8.06 -52.49 -0.42 0.32 16 30 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.07 0.60 7.79 -51.93 -0.40 0.20 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.73 8.07 -51.93 -0.42 0.32 16 36 H 0.08 1.34 7.42 -51.93 -0.39 0.96 16 37 H 0.07 0.63 8.07 -51.93 -0.42 0.22 16 38 H 0.08 0.84 6.43 -51.92 -0.33 0.51 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.82 7.24 -51.93 -0.38 0.44 16 42 H 0.08 1.49 6.87 -51.93 -0.36 1.13 16 43 H 0.07 1.07 7.40 -51.93 -0.38 0.68 16 44 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 45 H 0.12 2.29 7.77 -52.49 -0.41 1.88 16 46 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 47 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 48 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 49 H 0.11 2.18 6.96 -52.49 -0.37 1.82 16 LS Contribution 395.53 15.07 5.96 5.96 Total: -1.00 -33.34 395.53 -9.56 -42.90 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -8.41 Total: 3.96 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -2.94 Total: -21.70 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.34 Total: -37.36 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.08 Total: -12.15 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.60 Total: 18.38 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.34 -9.56 -42.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890812735.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.292 kcal (2) G-P(sol) polarization free energy of solvation -33.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds