Wall clock time and date at job start Tue Mar 31 2020 11:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50702 * 119.99753 * 2 1 4 4 C 1.53000 * 109.47154 * 125.00088 * 3 2 1 5 5 C 1.52997 * 109.47196 * 179.97438 * 4 3 2 6 6 N 1.46496 * 109.47248 * 180.02562 * 5 4 3 7 7 C 1.46498 * 119.99639 * 269.99767 * 6 5 4 8 8 C 1.53004 * 109.47278 * 269.99914 * 7 6 5 9 9 C 1.34777 * 120.00284 * 90.00008 * 6 5 4 10 10 O 1.21283 * 119.99533 * 0.02562 * 9 6 5 11 11 C 1.50697 * 120.00098 * 180.27403 * 9 6 5 12 12 C 1.52997 * 109.47147 * 179.72332 * 11 9 6 13 13 H 1.09003 * 109.47281 * 305.36877 * 12 11 9 14 14 C 1.50700 * 109.46925 * 65.37096 * 12 11 9 15 15 H 1.07995 * 120.00133 * 34.62150 * 14 12 11 16 16 C 1.37882 * 119.99824 * 214.61982 * 14 12 11 17 17 N 1.31515 * 120.00108 * 186.44849 * 16 14 12 18 18 Si 1.86801 * 119.99993 * 6.44664 * 16 14 12 19 19 H 1.48494 * 109.46937 * 85.01165 * 18 16 14 20 20 H 1.48505 * 109.46985 * 205.00839 * 18 16 14 21 21 H 1.48495 * 109.47016 * 325.01014 * 18 16 14 22 22 C 1.50694 * 109.47321 * 185.37035 * 12 11 9 23 23 C 1.38237 * 120.00015 * 296.35946 * 22 12 11 24 24 C 1.38241 * 120.00027 * 179.78827 * 23 22 12 25 25 C 1.38231 * 119.99919 * 0.43656 * 24 23 22 26 26 C 1.38241 * 119.99902 * 359.81911 * 25 24 23 27 27 C 1.38234 * 120.00048 * 116.63142 * 22 12 11 28 28 H 1.07997 * 119.99679 * 359.97438 * 1 2 3 29 29 H 1.07994 * 119.99692 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.00451 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47059 * 4.99577 * 3 2 1 32 32 H 1.09005 * 109.46829 * 245.00189 * 3 2 1 33 33 H 1.08998 * 109.46866 * 59.99918 * 4 3 2 34 34 H 1.08997 * 109.47114 * 300.00014 * 4 3 2 35 35 H 1.09005 * 109.47402 * 59.99417 * 5 4 3 36 36 H 1.09005 * 109.46935 * 300.00192 * 5 4 3 37 37 H 1.09002 * 109.47656 * 30.00301 * 7 6 5 38 38 H 1.09007 * 109.46890 * 150.00250 * 7 6 5 39 39 H 1.08994 * 109.47166 * 60.00400 * 8 7 6 40 40 H 1.09001 * 109.46679 * 180.02562 * 8 7 6 41 41 H 1.09001 * 109.46651 * 299.99889 * 8 7 6 42 42 H 1.08998 * 109.47190 * 299.72327 * 11 9 6 43 43 H 1.09007 * 109.47079 * 59.72625 * 11 9 6 44 44 H 0.96998 * 120.00572 * 179.97438 * 17 16 14 45 45 H 1.07998 * 120.00221 * 359.97438 * 23 22 12 46 46 H 1.07993 * 120.00110 * 180.27600 * 24 23 22 47 47 H 1.07997 * 120.00305 * 179.83493 * 25 24 23 48 48 H 1.07999 * 119.99476 * 179.97438 * 26 25 24 49 49 H 1.08000 * 120.00387 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3332 1.1816 5 6 3.8004 2.6579 1.1812 6 7 4.7311 2.6845 2.3123 7 6 4.2968 3.2178 3.6058 8 6 4.5871 4.7190 3.6619 9 6 5.9869 2.2184 2.1628 10 8 6.3465 1.7774 1.0918 11 6 6.9423 2.2401 3.3280 12 6 8.2874 1.6531 2.8956 13 1 8.1317 0.6604 2.4730 14 6 8.9157 2.5477 1.8583 15 1 8.7800 3.6176 1.9143 16 6 9.6638 2.0002 0.8377 17 7 10.3162 2.7838 0.0071 18 14 9.7508 0.1453 0.6347 19 1 8.5866 -0.3208 -0.1606 20 1 11.0076 -0.2174 -0.0684 21 1 9.7275 -0.5006 1.9717 22 6 9.1993 1.5527 4.0911 23 6 9.6034 2.6985 4.7503 24 6 10.4365 2.6061 5.8497 25 6 10.8726 1.3685 6.2842 26 6 10.4728 0.2229 5.6217 27 6 9.6363 0.3151 4.5250 28 1 -0.5399 0.9353 0.0004 29 1 -0.5399 -0.9353 0.0004 30 1 1.8501 -0.9352 0.0004 31 1 1.3585 2.1317 0.0895 32 1 2.6213 1.4026 -0.9315 33 1 3.7400 0.5067 1.0920 34 1 2.4773 1.2356 2.1130 35 1 3.0958 3.4848 1.2705 36 1 4.3583 2.7550 0.2498 37 1 3.2267 3.0499 3.7273 38 1 4.8371 2.7131 4.4068 39 1 4.0469 5.2238 2.8611 40 1 4.2643 5.1156 4.6246 41 1 5.6572 4.8869 3.5405 42 1 7.0849 3.2678 3.6619 43 1 6.5325 1.6461 4.1450 44 1 10.8428 2.3987 -0.7107 45 1 9.2659 3.6658 4.4084 46 1 10.7486 3.5010 6.3674 47 1 11.5256 1.2964 7.1414 48 1 10.8139 -0.7439 5.9610 49 1 9.3238 -0.5799 4.0076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890812735.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:39 Heat of formation + Delta-G solvation = -24.463927 kcal Electronic energy + Delta-G solvation = -26611.177230 eV Core-core repulsion = 23116.341247 eV Total energy + Delta-G solvation = -3494.835982 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.01693 -39.89366 -37.55150 -36.29934 -35.85942 -33.77906 -32.90761 -31.60244 -30.83769 -30.33776 -28.21551 -26.44690 -24.47956 -23.97151 -23.30973 -22.71512 -21.23901 -20.68492 -19.58380 -19.03107 -18.14166 -17.27576 -17.19607 -16.40766 -16.32497 -16.25273 -15.69290 -15.37381 -15.20984 -14.81473 -14.69434 -14.55462 -14.36515 -14.16063 -14.03536 -13.72976 -13.49530 -13.30508 -13.27805 -12.96095 -12.81322 -12.77161 -12.67705 -12.29140 -12.08824 -12.00366 -11.88357 -11.84298 -11.70688 -11.62482 -11.46161 -11.09254 -10.62585 -10.47080 -10.23576 -9.61711 -9.49866 -9.29942 -8.23671 -6.18976 0.68734 0.73687 1.28215 1.36770 1.38979 1.39454 1.93282 2.21412 2.39971 3.07734 3.23982 3.77510 3.89482 4.05300 4.11916 4.13575 4.26972 4.31550 4.31944 4.35073 4.39447 4.45699 4.49699 4.52259 4.59021 4.60703 4.69839 4.75438 4.82149 4.86076 4.93189 4.94678 5.00495 5.05572 5.10640 5.19989 5.21444 5.32186 5.37992 5.40574 5.43553 5.67835 5.74108 5.77187 5.82080 5.84418 5.89170 6.02899 6.32744 6.36205 6.59467 6.79375 7.44563 7.52354 8.93495 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012257 B = 0.003976 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.782883 B = 7041.287008 C = 7906.418779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.169 4.169 3 C -0.088 4.088 4 C -0.117 4.117 5 C 0.115 3.885 6 N -0.620 5.620 7 C 0.102 3.898 8 C -0.169 4.169 9 C 0.508 3.492 10 O -0.562 6.562 11 C -0.109 4.109 12 C 0.057 3.943 13 H 0.029 0.971 14 C -0.462 4.462 15 H 0.033 0.967 16 C 0.026 3.974 17 N -0.953 5.953 18 Si 0.921 3.079 19 H -0.289 1.289 20 H -0.297 1.297 21 H -0.232 1.232 22 C -0.062 4.062 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.140 4.140 26 C -0.124 4.124 27 C -0.154 4.154 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.034 0.966 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.046 0.954 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.091 0.909 41 H 0.035 0.965 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.258 0.742 45 H 0.108 0.892 46 H 0.140 0.860 47 H 0.147 0.853 48 H 0.140 0.860 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.482 -1.731 12.919 21.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.187 4.187 3 C -0.126 4.126 4 C -0.155 4.155 5 C -0.007 4.007 6 N -0.355 5.355 7 C -0.020 4.020 8 C -0.227 4.227 9 C 0.298 3.702 10 O -0.439 6.439 11 C -0.148 4.148 12 C 0.038 3.962 13 H 0.047 0.953 14 C -0.500 4.500 15 H 0.051 0.949 16 C -0.171 4.171 17 N -0.595 5.595 18 Si 0.748 3.252 19 H -0.216 1.216 20 H -0.224 1.224 21 H -0.155 1.155 22 C -0.063 4.063 23 C -0.137 4.137 24 C -0.142 4.142 25 C -0.157 4.157 26 C -0.142 4.142 27 C -0.172 4.172 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.065 0.935 37 H 0.123 0.877 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.055 0.945 42 H 0.110 0.890 43 H 0.118 0.882 44 H 0.067 0.933 45 H 0.126 0.874 46 H 0.158 0.842 47 H 0.165 0.835 48 H 0.158 0.842 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.179 -1.957 12.216 20.367 hybrid contribution 0.574 -0.632 -1.271 1.531 sum -15.604 -2.589 10.946 19.236 Atomic orbital electron populations 1.24010 0.95332 1.02811 1.00142 1.22982 0.96609 0.98251 1.00870 1.20664 0.97853 0.96273 0.97791 1.21766 0.97356 0.96963 0.99456 1.21447 0.91646 0.98453 0.89178 1.48180 1.11176 1.62808 1.13308 1.21793 1.02134 0.94311 0.83714 1.22198 1.01218 0.96044 1.03266 1.21076 0.82519 0.76582 0.90057 1.90705 1.76730 1.46674 1.29838 1.21611 0.94244 1.03341 0.95651 1.18005 0.90866 0.96286 0.91084 0.95259 1.20770 1.28796 0.92636 1.07759 0.94885 1.25564 0.94794 1.01084 0.95614 1.70029 1.33500 1.36726 1.19203 0.86158 0.75861 0.83374 0.79832 1.21605 1.22403 1.15468 1.20480 0.97895 0.93436 0.94492 1.20990 0.99038 0.97745 0.95905 1.21395 0.97462 0.98782 0.96542 1.21339 1.01193 0.92046 1.01171 1.21332 0.97651 0.99752 0.95417 1.21248 1.00798 0.96824 0.98366 0.87368 0.87627 0.88379 0.89443 0.92185 0.94686 0.90223 0.87982 0.93508 0.87725 0.89518 0.92618 0.89020 0.94533 0.88967 0.88185 0.93321 0.87373 0.84223 0.83496 0.84233 0.87499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.92 14.32 67.78 0.97 -1.95 16 2 C -0.17 -3.32 9.52 25.64 0.24 -3.07 16 3 C -0.09 -1.81 5.66 29.85 0.17 -1.64 16 4 C -0.12 -2.81 5.52 30.59 0.17 -2.65 16 5 C 0.12 3.12 5.41 86.38 0.47 3.59 16 6 N -0.62 -18.49 2.47 -821.80 -2.03 -20.52 16 7 C 0.10 2.03 5.94 86.38 0.51 2.54 16 8 C -0.17 -3.27 10.24 71.98 0.74 -2.54 16 9 C 0.51 20.74 7.42 87.66 0.65 21.39 16 10 O -0.56 -29.44 14.57 -3.04 -0.04 -29.49 16 11 C -0.11 -4.12 3.49 29.85 0.10 -4.02 16 12 C 0.06 2.68 1.28 -12.29 -0.02 2.66 16 13 H 0.03 1.48 4.79 -2.39 -0.01 1.47 16 14 C -0.46 -26.82 6.94 25.60 0.18 -26.64 16 15 H 0.03 2.11 8.06 -2.91 -0.02 2.08 16 16 C 0.03 1.59 5.47 84.66 0.46 2.05 16 17 N -0.95 -63.42 13.96 21.45 0.30 -63.12 16 18 Si 0.92 49.58 27.04 68.60 1.85 51.44 16 19 H -0.29 -16.21 7.11 99.48 0.71 -15.50 16 20 H -0.30 -15.80 7.11 99.48 0.71 -15.09 16 21 H -0.23 -11.17 5.15 99.48 0.51 -10.66 16 22 C -0.06 -2.61 4.77 -19.87 -0.09 -2.71 16 23 C -0.12 -4.53 8.87 22.27 0.20 -4.33 16 24 C -0.12 -3.83 10.05 22.27 0.22 -3.61 16 25 C -0.14 -3.92 10.05 22.27 0.22 -3.70 16 26 C -0.12 -3.81 10.05 22.27 0.22 -3.58 16 27 C -0.15 -5.85 9.13 22.27 0.20 -5.65 16 28 H 0.11 1.40 7.84 -2.91 -0.02 1.38 16 29 H 0.11 1.41 8.06 -2.91 -0.02 1.38 16 30 H 0.10 2.06 8.06 -2.91 -0.02 2.04 16 31 H 0.09 1.41 7.79 -2.39 -0.02 1.39 16 32 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.10 2.03 8.07 -2.38 -0.02 2.01 16 36 H 0.05 1.62 7.42 -2.38 -0.02 1.60 16 37 H 0.10 1.44 8.07 -2.39 -0.02 1.42 16 38 H 0.09 1.61 6.43 -2.38 -0.02 1.60 16 39 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.04 0.91 7.24 -2.39 -0.02 0.89 16 42 H 0.09 3.32 6.87 -2.39 -0.02 3.30 16 43 H 0.10 3.09 7.40 -2.38 -0.02 3.07 16 44 H 0.26 16.40 8.31 -92.71 -0.77 15.63 16 45 H 0.11 4.24 7.77 -2.91 -0.02 4.22 16 46 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 47 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 48 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 49 H 0.11 4.06 6.96 -2.91 -0.02 4.04 16 Total: -1.00 -79.60 395.53 6.40 -73.20 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.70 Total: 22.34 kcal Atomic # 6 Polarization: -39.48 SS G_CDS: 5.63 Total: -33.85 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -1.73 Total: -83.64 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.04 Total: -29.49 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 1.85 Total: 51.44 kcal Total: -79.60 6.40 -73.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890812735.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.737 kcal (2) G-P(sol) polarization free energy of solvation -79.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds