Wall clock time and date at job start Tue Mar 31 2020 10:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.46979 * 2 1 4 4 C 1.50701 * 109.47613 * 239.99742 * 2 1 3 5 5 H 1.08002 * 119.99858 * 240.00173 * 4 2 1 6 6 C 1.37880 * 119.99869 * 59.99397 * 4 2 1 7 7 N 1.31516 * 119.99806 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99917 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46910 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46556 * 120.00498 * 8 6 4 11 11 H 1.48500 * 109.46918 * 240.00275 * 8 6 4 12 12 C 1.50704 * 109.47244 * 119.99607 * 2 1 3 13 13 O 1.21279 * 120.00077 * 73.04581 * 12 2 1 14 14 N 1.34775 * 119.99962 * 253.04516 * 12 2 1 15 15 C 1.47430 * 125.64901 * 9.85702 * 14 12 2 16 16 H 1.08995 * 110.36642 * 274.74524 * 15 14 12 17 17 C 1.52998 * 110.36410 * 37.06958 * 15 14 12 18 18 C 1.55128 * 104.72242 * 155.81598 * 15 14 12 19 19 C 1.55160 * 101.48367 * 37.29530 * 18 15 14 20 20 H 1.09003 * 110.71937 * 82.69753 * 19 18 15 21 21 C 1.50700 * 110.71968 * 205.96627 * 19 18 15 22 22 C 1.38240 * 119.99999 * 221.72753 * 21 19 18 23 23 C 1.38242 * 119.99690 * 179.76999 * 22 21 19 24 24 C 1.38235 * 119.99845 * 0.47605 * 23 22 21 25 25 C 1.38233 * 120.00332 * 359.79884 * 24 23 22 26 26 C 1.38234 * 119.99883 * 41.99688 * 21 19 18 27 27 C 1.47022 * 125.64964 * 190.16765 * 14 12 2 28 28 C 1.53007 * 109.87988 * 300.44092 * 27 14 12 29 29 C 1.52997 * 109.88430 * 61.60338 * 27 14 12 30 30 H 1.09000 * 109.47165 * 139.13464 * 1 2 3 31 31 H 1.09004 * 109.47272 * 259.13170 * 1 2 3 32 32 H 1.08999 * 109.47336 * 19.13049 * 1 2 3 33 33 H 0.96994 * 119.99747 * 179.97438 * 7 6 4 34 34 H 1.08995 * 109.47110 * 62.31195 * 17 15 14 35 35 H 1.08997 * 109.46783 * 182.31052 * 17 15 14 36 36 H 1.08998 * 109.47258 * 302.30447 * 17 15 14 37 37 H 1.08996 * 111.19375 * 279.19499 * 18 15 14 38 38 H 1.09004 * 110.93813 * 155.28434 * 18 15 14 39 39 H 1.07990 * 120.00147 * 359.97438 * 22 21 19 40 40 H 1.07999 * 119.99816 * 180.25106 * 23 22 21 41 41 H 1.07999 * 119.99978 * 179.76989 * 24 23 22 42 42 H 1.08005 * 120.00307 * 179.97438 * 25 24 23 43 43 H 1.08002 * 120.00073 * 0.02562 * 26 21 19 44 44 H 1.08996 * 109.47105 * 66.61929 * 28 27 14 45 45 H 1.08997 * 109.46960 * 186.62645 * 28 27 14 46 46 H 1.09008 * 109.46690 * 306.62024 * 28 27 14 47 47 H 1.08993 * 109.47003 * 58.54933 * 29 27 14 48 48 H 1.08997 * 109.47248 * 178.55383 * 29 27 14 49 49 H 1.09003 * 109.46824 * 298.54490 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9434 0.8300 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 3.1457 -2.2878 -3.6035 10 1 1.1661 -1.5869 -4.8159 11 1 3.1467 -0.1875 -4.8164 12 6 2.0323 -0.7103 1.2305 13 8 1.9457 -1.9173 1.3118 14 7 2.5778 -0.0043 2.2407 15 6 2.5622 1.4643 2.3691 16 1 3.3938 1.9022 1.8172 17 6 1.2319 2.0286 1.8663 18 6 2.7200 1.7288 3.8895 19 6 3.7129 0.6082 4.2966 20 1 4.7397 0.9077 4.0866 21 6 3.5469 0.2513 5.7513 22 6 4.6604 0.0286 6.5397 23 6 4.5082 -0.2940 7.8753 24 6 3.2424 -0.4036 8.4200 25 6 2.1289 -0.1865 7.6302 26 6 2.2812 0.1412 6.2958 27 6 3.2927 -0.5707 3.3938 28 6 2.3687 -1.5143 4.1665 29 6 4.5332 -1.3283 2.9161 30 1 -0.3633 -0.7772 -0.6724 31 1 -0.3634 -0.1938 1.0093 32 1 -0.3634 0.9709 -0.3368 33 1 0.7094 1.1615 -3.4844 34 1 0.4184 1.6437 2.4812 35 1 1.2517 3.1165 1.9295 36 1 1.0780 1.7276 0.8301 37 1 1.7689 1.6160 4.4099 38 1 3.1479 2.7148 4.0710 39 1 5.6491 0.1099 6.1132 40 1 5.3781 -0.4641 8.4923 41 1 3.1234 -0.6594 9.4625 42 1 1.1399 -0.2726 8.0556 43 1 1.4112 0.3106 5.6787 44 1 2.1394 -2.3836 3.5502 45 1 2.8636 -1.8382 5.0820 46 1 1.4449 -0.9930 4.4177 47 1 5.1819 -0.6502 2.3617 48 1 5.0718 -1.7234 3.7774 49 1 4.2296 -2.1511 2.2689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894015070.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:28 Heat of formation + Delta-G solvation = 0.973989 kcal Electronic energy + Delta-G solvation = -28043.718832 eV Core-core repulsion = 24549.985920 eV Total energy + Delta-G solvation = -3493.732912 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.80834 -38.97672 -36.97350 -34.51762 -33.18766 -32.19440 -31.08859 -30.55425 -29.29482 -28.08503 -26.95571 -25.19096 -24.18279 -23.25044 -22.43636 -21.41560 -21.17270 -19.44158 -17.69372 -16.86639 -16.45994 -16.24116 -15.58789 -15.02911 -15.00255 -14.71577 -14.05887 -13.83666 -13.64544 -13.45613 -13.38211 -13.11969 -12.90575 -12.79597 -12.55965 -12.21165 -12.02411 -11.76947 -11.65052 -11.40991 -11.37971 -11.18134 -11.04539 -10.92797 -10.84929 -10.69708 -10.59967 -10.54561 -10.39692 -10.19989 -10.15487 -10.02965 -8.96433 -8.82586 -8.65503 -8.49149 -8.26951 -7.94574 -6.06852 -4.07626 1.26841 1.32999 3.30412 3.38151 3.44305 3.62567 3.70653 3.77291 4.45123 4.61330 4.62552 4.75762 4.89973 4.90894 5.04211 5.20423 5.27954 5.29042 5.37679 5.41441 5.44234 5.56616 5.69938 5.77958 5.79175 5.86987 5.92485 5.94001 5.98469 6.02683 6.10890 6.21027 6.25183 6.29372 6.40231 6.43097 6.47909 6.55451 6.62515 6.66464 6.67538 6.79326 6.91833 6.92200 6.99526 7.15381 7.49372 7.78454 7.91374 8.18409 8.47840 8.94122 9.30153 9.56046 11.02993 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.026174 B = 0.003629 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.520276 B = 7713.747590 C = 8026.882345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.025 3.975 3 H 0.059 0.941 4 C -0.502 4.502 5 H 0.062 0.938 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.284 1.284 12 C 0.546 3.454 13 O -0.547 6.547 14 N -0.620 5.620 15 C 0.136 3.864 16 H 0.072 0.928 17 C -0.199 4.199 18 C -0.122 4.122 19 C -0.058 4.058 20 H 0.090 0.910 21 C -0.059 4.059 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.127 4.127 25 C -0.123 4.123 26 C -0.107 4.107 27 C 0.172 3.828 28 C -0.154 4.154 29 C -0.153 4.153 30 H 0.052 0.948 31 H 0.011 0.989 32 H 0.054 0.946 33 H 0.261 0.739 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.116 0.884 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.126 0.874 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.056 0.944 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.889 3.774 19.283 20.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.004 3.996 3 H 0.076 0.924 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 C 0.338 3.662 13 O -0.423 6.423 14 N -0.357 5.357 15 C 0.032 3.968 16 H 0.090 0.910 17 C -0.256 4.256 18 C -0.160 4.160 19 C -0.077 4.077 20 H 0.109 0.891 21 C -0.059 4.059 22 C -0.135 4.135 23 C -0.140 4.140 24 C -0.146 4.146 25 C -0.141 4.141 26 C -0.125 4.125 27 C 0.087 3.913 28 C -0.212 4.212 29 C -0.212 4.212 30 H 0.071 0.929 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.134 0.866 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.143 0.857 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.710 3.166 19.090 19.916 hybrid contribution 0.358 -0.350 -0.782 0.928 sum 5.068 2.816 18.309 19.205 Atomic orbital electron populations 1.21623 0.95892 1.01830 0.96971 1.19245 0.94219 0.96926 0.89165 0.92377 1.21016 1.31633 1.12254 0.89173 0.91949 1.24897 0.95058 0.95045 0.98912 1.69968 1.36674 1.22759 1.23527 0.86446 0.78681 0.79759 0.82669 1.19674 1.20947 1.21028 1.21618 0.74504 0.87441 0.82619 1.90510 1.56207 1.15236 1.80333 1.48996 1.57745 1.06273 1.22706 1.21777 0.98751 0.81543 0.94701 0.90973 1.22954 0.95688 1.00483 1.06475 1.23065 0.99410 0.98032 0.95491 1.21316 1.00426 0.95529 0.90446 0.89144 1.19607 0.93235 0.98508 0.94534 1.21039 0.98263 1.00355 0.93865 1.21086 0.97236 1.00423 0.95265 1.21098 0.92778 1.00990 0.99685 1.21126 0.98665 1.00243 0.94020 1.21203 0.97205 0.99150 0.94935 1.20711 0.92211 0.92462 0.85931 1.22377 0.98908 1.00333 0.99570 1.22112 0.96670 1.01198 1.01171 0.92900 0.97025 0.92672 0.92982 0.92804 0.92253 0.86611 0.90326 0.90194 0.86182 0.86358 0.86485 0.86283 0.85663 0.91021 0.92417 0.92655 0.92581 0.92518 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.50 7.30 37.15 0.27 -2.23 16 2 C 0.03 0.62 1.66 -92.92 -0.15 0.46 16 3 H 0.06 1.43 5.08 -51.93 -0.26 1.16 16 4 C -0.50 -14.08 8.10 -34.44 -0.28 -14.36 16 5 H 0.06 1.84 7.54 -52.49 -0.40 1.45 16 6 C 0.06 1.72 5.25 -17.82 -0.09 1.62 16 7 N -0.89 -24.67 12.22 55.43 0.68 -23.99 16 8 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.55 12.56 5.68 -10.98 -0.06 12.50 16 13 O -0.55 -14.13 14.36 5.56 0.08 -14.05 16 14 N -0.62 -11.38 2.73 -148.32 -0.41 -11.79 16 15 C 0.14 2.08 3.35 -66.30 -0.22 1.86 16 16 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 17 C -0.20 -3.13 8.30 37.16 0.31 -2.82 16 18 C -0.12 -1.47 5.83 -24.46 -0.14 -1.61 16 19 C -0.06 -0.72 2.65 -89.94 -0.24 -0.95 16 20 H 0.09 1.03 7.73 -51.93 -0.40 0.63 16 21 C -0.06 -0.66 3.74 -104.62 -0.39 -1.06 16 22 C -0.12 -1.21 9.69 -39.58 -0.38 -1.59 16 23 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16 24 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 25 C -0.12 -1.23 10.05 -39.58 -0.40 -1.62 16 26 C -0.11 -1.20 6.59 -39.58 -0.26 -1.46 16 27 C 0.17 2.68 0.77 -130.84 -0.10 2.58 16 28 C -0.15 -2.44 6.87 37.16 0.26 -2.18 16 29 C -0.15 -2.42 8.42 37.16 0.31 -2.11 16 30 H 0.05 1.37 7.64 -51.93 -0.40 0.98 16 31 H 0.01 0.24 7.69 -51.93 -0.40 -0.16 16 32 H 0.05 1.29 7.46 -51.93 -0.39 0.90 16 33 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.12 2.22 2.60 -51.93 -0.14 2.09 16 37 H 0.08 0.93 5.98 -51.93 -0.31 0.62 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.12 1.07 8.03 -52.49 -0.42 0.65 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 42 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 43 H 0.13 1.43 5.21 -52.49 -0.27 1.15 16 44 H 0.07 1.35 6.70 -51.93 -0.35 1.00 16 45 H 0.06 0.82 6.35 -51.93 -0.33 0.49 16 46 H 0.05 0.85 6.15 -51.92 -0.32 0.53 16 47 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 48 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.07 1.32 7.24 -51.93 -0.38 0.94 16 LS Contribution 367.17 15.07 5.53 5.53 Total: -1.00 -30.50 367.17 -9.20 -39.71 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -7.69 Total: 4.10 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -2.37 Total: -16.09 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.27 Total: -35.78 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.08 Total: -14.05 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.50 -9.20 -39.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894015070.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.681 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds