Wall clock time and date at job start Tue Mar 31 2020 10:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.46979 * 2 1 4 4 C 1.50701 * 109.47613 * 239.99742 * 2 1 3 5 5 H 1.08002 * 119.99858 * 240.00173 * 4 2 1 6 6 C 1.37880 * 119.99869 * 59.99397 * 4 2 1 7 7 N 1.31516 * 119.99806 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99917 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46910 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46556 * 120.00498 * 8 6 4 11 11 H 1.48500 * 109.46918 * 240.00275 * 8 6 4 12 12 C 1.50704 * 109.47244 * 119.99607 * 2 1 3 13 13 O 1.21279 * 120.00077 * 73.04581 * 12 2 1 14 14 N 1.34775 * 119.99962 * 253.04516 * 12 2 1 15 15 C 1.47430 * 125.64901 * 9.85702 * 14 12 2 16 16 H 1.08995 * 110.36642 * 274.74524 * 15 14 12 17 17 C 1.52998 * 110.36410 * 37.06958 * 15 14 12 18 18 C 1.55128 * 104.72242 * 155.81598 * 15 14 12 19 19 C 1.55160 * 101.48367 * 37.29530 * 18 15 14 20 20 H 1.09003 * 110.71937 * 82.69753 * 19 18 15 21 21 C 1.50700 * 110.71968 * 205.96627 * 19 18 15 22 22 C 1.38240 * 119.99999 * 221.72753 * 21 19 18 23 23 C 1.38242 * 119.99690 * 179.76999 * 22 21 19 24 24 C 1.38235 * 119.99845 * 0.47605 * 23 22 21 25 25 C 1.38233 * 120.00332 * 359.79884 * 24 23 22 26 26 C 1.38234 * 119.99883 * 41.99688 * 21 19 18 27 27 C 1.47022 * 125.64964 * 190.16765 * 14 12 2 28 28 C 1.53007 * 109.87988 * 300.44092 * 27 14 12 29 29 C 1.52997 * 109.88430 * 61.60338 * 27 14 12 30 30 H 1.09000 * 109.47165 * 139.13464 * 1 2 3 31 31 H 1.09004 * 109.47272 * 259.13170 * 1 2 3 32 32 H 1.08999 * 109.47336 * 19.13049 * 1 2 3 33 33 H 0.96994 * 119.99747 * 179.97438 * 7 6 4 34 34 H 1.08995 * 109.47110 * 62.31195 * 17 15 14 35 35 H 1.08997 * 109.46783 * 182.31052 * 17 15 14 36 36 H 1.08998 * 109.47258 * 302.30447 * 17 15 14 37 37 H 1.08996 * 111.19375 * 279.19499 * 18 15 14 38 38 H 1.09004 * 110.93813 * 155.28434 * 18 15 14 39 39 H 1.07990 * 120.00147 * 359.97438 * 22 21 19 40 40 H 1.07999 * 119.99816 * 180.25106 * 23 22 21 41 41 H 1.07999 * 119.99978 * 179.76989 * 24 23 22 42 42 H 1.08005 * 120.00307 * 179.97438 * 25 24 23 43 43 H 1.08002 * 120.00073 * 0.02562 * 26 21 19 44 44 H 1.08996 * 109.47105 * 66.61929 * 28 27 14 45 45 H 1.08997 * 109.46960 * 186.62645 * 28 27 14 46 46 H 1.09008 * 109.46690 * 306.62024 * 28 27 14 47 47 H 1.08993 * 109.47003 * 58.54933 * 29 27 14 48 48 H 1.08997 * 109.47248 * 178.55383 * 29 27 14 49 49 H 1.09003 * 109.46824 * 298.54490 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9434 0.8300 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 3.1457 -2.2878 -3.6035 10 1 1.1661 -1.5869 -4.8159 11 1 3.1467 -0.1875 -4.8164 12 6 2.0323 -0.7103 1.2305 13 8 1.9457 -1.9173 1.3118 14 7 2.5778 -0.0043 2.2407 15 6 2.5622 1.4643 2.3691 16 1 3.3938 1.9022 1.8172 17 6 1.2319 2.0286 1.8663 18 6 2.7200 1.7288 3.8895 19 6 3.7129 0.6082 4.2966 20 1 4.7397 0.9077 4.0866 21 6 3.5469 0.2513 5.7513 22 6 4.6604 0.0286 6.5397 23 6 4.5082 -0.2940 7.8753 24 6 3.2424 -0.4036 8.4200 25 6 2.1289 -0.1865 7.6302 26 6 2.2812 0.1412 6.2958 27 6 3.2927 -0.5707 3.3938 28 6 2.3687 -1.5143 4.1665 29 6 4.5332 -1.3283 2.9161 30 1 -0.3633 -0.7772 -0.6724 31 1 -0.3634 -0.1938 1.0093 32 1 -0.3634 0.9709 -0.3368 33 1 0.7094 1.1615 -3.4844 34 1 0.4184 1.6437 2.4812 35 1 1.2517 3.1165 1.9295 36 1 1.0780 1.7276 0.8301 37 1 1.7689 1.6160 4.4099 38 1 3.1479 2.7148 4.0710 39 1 5.6491 0.1099 6.1132 40 1 5.3781 -0.4641 8.4923 41 1 3.1234 -0.6594 9.4625 42 1 1.1399 -0.2726 8.0556 43 1 1.4112 0.3106 5.6787 44 1 2.1394 -2.3836 3.5502 45 1 2.8636 -1.8382 5.0820 46 1 1.4449 -0.9930 4.4177 47 1 5.1819 -0.6502 2.3617 48 1 5.0718 -1.7234 3.7774 49 1 4.2296 -2.1511 2.2689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894015070.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:27 Heat of formation + Delta-G solvation = -14.265673 kcal Electronic energy + Delta-G solvation = -28044.379673 eV Core-core repulsion = 24549.985920 eV Total energy + Delta-G solvation = -3494.393753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.03250 -40.13156 -38.39359 -36.24436 -34.78364 -33.36144 -32.41927 -31.82709 -30.53409 -29.30754 -28.20561 -27.26707 -25.33251 -24.77428 -23.30522 -22.67837 -22.38937 -20.66411 -19.25356 -18.43490 -17.92357 -17.46462 -16.83486 -16.65780 -16.03641 -15.94014 -15.57260 -15.19550 -15.06921 -14.77192 -14.62973 -14.24143 -14.21643 -13.98293 -13.72411 -13.50725 -13.37925 -13.20313 -12.98775 -12.86650 -12.84068 -12.69882 -12.66873 -12.43599 -12.26006 -12.24044 -12.06399 -11.98867 -11.81883 -11.66151 -11.53523 -11.34174 -10.82261 -10.55256 -10.14177 -9.69786 -9.48501 -9.43178 -8.19176 -6.26602 0.50348 0.59543 1.36977 1.39426 1.51319 1.96574 2.19959 2.44762 2.91023 3.13116 3.55846 3.62377 3.68790 4.07552 4.08638 4.18625 4.21863 4.23810 4.29977 4.32306 4.39799 4.49801 4.55272 4.64166 4.68530 4.72139 4.74291 4.79210 4.84991 4.89195 4.91945 4.96280 5.01446 5.09489 5.10367 5.18794 5.22065 5.25788 5.32413 5.36247 5.40794 5.49511 5.66775 5.68906 5.71761 5.77814 5.81425 5.89598 6.18857 6.19903 6.72705 6.82680 7.37414 7.57415 8.89651 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.026174 B = 0.003629 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.520276 B = 7713.747590 C = 8026.882345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.025 3.975 3 H 0.062 0.938 4 C -0.530 4.530 5 H 0.035 0.965 6 C 0.026 3.974 7 N -0.905 5.905 8 Si 0.952 3.048 9 H -0.281 1.281 10 H -0.277 1.277 11 H -0.269 1.269 12 C 0.543 3.457 13 O -0.588 6.588 14 N -0.617 5.617 15 C 0.126 3.874 16 H 0.076 0.924 17 C -0.194 4.194 18 C -0.109 4.109 19 C -0.045 4.045 20 H 0.106 0.894 21 C -0.072 4.072 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.129 4.129 25 C -0.131 4.131 26 C -0.119 4.119 27 C 0.163 3.837 28 C -0.141 4.141 29 C -0.149 4.149 30 H 0.021 0.979 31 H 0.024 0.976 32 H 0.055 0.945 33 H 0.266 0.734 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.135 0.865 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.132 0.868 43 H 0.118 0.882 44 H 0.032 0.968 45 H 0.074 0.926 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.084 0.916 49 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.130 5.328 21.543 23.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.004 3.996 3 H 0.079 0.921 4 C -0.568 4.568 5 H 0.053 0.947 6 C -0.174 4.174 7 N -0.543 5.543 8 Si 0.778 3.222 9 H -0.206 1.206 10 H -0.202 1.202 11 H -0.195 1.195 12 C 0.335 3.665 13 O -0.468 6.468 14 N -0.351 5.351 15 C 0.023 3.977 16 H 0.094 0.906 17 C -0.251 4.251 18 C -0.147 4.147 19 C -0.063 4.063 20 H 0.124 0.876 21 C -0.072 4.072 22 C -0.140 4.140 23 C -0.143 4.143 24 C -0.147 4.147 25 C -0.149 4.149 26 C -0.137 4.137 27 C 0.078 3.922 28 C -0.199 4.199 29 C -0.207 4.207 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.129 0.871 39 H 0.152 0.848 40 H 0.159 0.841 41 H 0.156 0.844 42 H 0.150 0.850 43 H 0.136 0.864 44 H 0.051 0.949 45 H 0.093 0.907 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.103 0.897 49 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 5.961 4.769 21.378 22.700 hybrid contribution -0.020 -0.820 -1.396 1.619 sum 5.941 3.949 19.982 21.217 Atomic orbital electron populations 1.21384 0.95631 1.00525 0.96849 1.19188 0.94421 0.96808 0.89176 0.92062 1.21152 1.32281 1.12082 0.91331 0.94703 1.25515 0.95107 0.95697 1.01117 1.70021 1.36724 1.23192 1.24372 0.85597 0.78350 0.78654 0.79611 1.20601 1.20211 1.19463 1.21239 0.75049 0.86879 0.83380 1.90484 1.58203 1.16770 1.81320 1.48916 1.56202 1.07875 1.22111 1.22091 0.98685 0.79377 0.97561 0.90641 1.22821 0.95965 1.02368 1.03915 1.23044 0.99922 0.99495 0.92242 1.21217 1.01155 0.93557 0.90404 0.87589 1.19519 0.93773 1.00041 0.93851 1.21262 0.98548 0.99872 0.94273 1.21406 0.98141 0.99565 0.95218 1.21430 0.92563 0.99930 1.00739 1.21357 0.99799 1.00015 0.93729 1.21234 0.97002 0.99936 0.95561 1.20990 0.91634 0.94042 0.85496 1.22244 0.99322 0.98867 0.99421 1.22075 0.97090 1.00003 1.01570 0.95993 0.95667 0.92612 0.92515 0.92738 0.89397 0.90269 0.89971 0.87116 0.84750 0.84147 0.84361 0.84990 0.86426 0.94876 0.90676 0.92493 0.92249 0.89732 0.95204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -4.23 7.30 71.98 0.53 -3.70 16 2 C 0.02 1.27 1.66 -12.29 -0.02 1.25 16 3 H 0.06 3.10 5.08 -2.39 -0.01 3.09 16 4 C -0.53 -30.99 8.10 25.60 0.21 -30.78 16 5 H 0.03 2.18 7.54 -2.91 -0.02 2.15 16 6 C 0.03 1.45 5.25 84.66 0.44 1.90 16 7 N -0.90 -50.65 12.22 21.45 0.26 -50.38 16 8 Si 0.95 45.01 29.54 68.60 2.03 47.04 16 9 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 12 C 0.54 26.05 5.68 87.66 0.50 26.55 16 13 O -0.59 -32.24 14.36 -3.03 -0.04 -32.28 16 14 N -0.62 -22.83 2.73 -741.57 -2.03 -24.86 16 15 C 0.13 3.68 3.35 45.54 0.15 3.83 16 16 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 17 C -0.19 -5.89 8.30 71.98 0.60 -5.29 16 18 C -0.11 -2.31 5.83 32.06 0.19 -2.12 16 19 C -0.04 -0.98 2.65 -10.35 -0.03 -1.01 16 20 H 0.11 2.03 7.73 -2.39 -0.02 2.01 16 21 C -0.07 -1.42 3.74 -19.86 -0.07 -1.50 16 22 C -0.12 -2.08 9.69 22.27 0.22 -1.87 16 23 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 24 C -0.13 -1.97 10.05 22.27 0.22 -1.75 16 25 C -0.13 -2.28 10.05 22.27 0.22 -2.06 16 26 C -0.12 -2.41 6.59 22.27 0.15 -2.26 16 27 C 0.16 4.98 0.77 3.95 0.00 4.99 16 28 C -0.14 -4.47 6.87 71.98 0.49 -3.97 16 29 C -0.15 -4.71 8.42 71.98 0.61 -4.11 16 30 H 0.02 1.16 7.64 -2.39 -0.02 1.14 16 31 H 0.02 1.12 7.69 -2.38 -0.02 1.10 16 32 H 0.05 2.68 7.46 -2.39 -0.02 2.66 16 33 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 34 H 0.05 1.62 8.09 -2.39 -0.02 1.60 16 35 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.08 3.06 2.60 -2.39 -0.01 3.05 16 37 H 0.08 1.72 5.98 -2.39 -0.01 1.71 16 38 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.13 1.86 8.03 -2.92 -0.02 1.84 16 40 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 41 H 0.14 1.48 8.06 -2.91 -0.02 1.45 16 42 H 0.13 1.86 8.06 -2.91 -0.02 1.84 16 43 H 0.12 2.50 5.21 -2.91 -0.02 2.48 16 44 H 0.03 1.29 6.70 -2.39 -0.02 1.28 16 45 H 0.07 2.08 6.35 -2.39 -0.02 2.06 16 46 H 0.06 1.75 6.15 -2.38 -0.01 1.74 16 47 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 49 H 0.03 1.16 7.24 -2.39 -0.02 1.15 16 Total: -1.00 -69.12 367.17 5.78 -63.34 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.93 Total: 20.72 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: 4.63 Total: -23.57 kcal Atomic # 7 Polarization: -73.48 SS G_CDS: -1.76 Total: -75.24 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -0.04 Total: -32.28 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -69.12 5.78 -63.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894015070.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.072 kcal (2) G-P(sol) polarization free energy of solvation -69.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds