Wall clock time and date at job start Tue Mar 31 2020 12:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00211 * 2 1 4 4 H 1.48505 * 109.47447 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47021 * 299.99333 * 3 2 1 6 6 H 1.48498 * 109.47493 * 59.99492 * 3 2 1 7 7 C 1.38819 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99837 * 163.07185 * 7 2 1 9 9 N 1.36930 * 119.99972 * 343.07672 * 7 2 1 10 10 C 1.46932 * 120.63308 * 331.84678 * 9 7 2 11 11 C 1.53190 * 108.77476 * 233.58967 * 10 9 7 12 12 C 1.53043 * 109.31308 * 305.36049 * 11 10 9 13 13 N 1.46900 * 109.46119 * 181.38694 * 12 11 10 14 14 C 1.46900 * 111.00071 * 155.00150 * 13 12 11 15 15 C 1.50696 * 109.46877 * 179.97438 * 14 13 12 16 16 C 1.37850 * 119.79311 * 259.99539 * 15 14 13 17 17 C 1.38265 * 119.95757 * 179.76748 * 16 15 14 18 18 C 1.38099 * 119.89018 * 0.15410 * 17 16 15 19 19 C 1.38578 * 120.48170 * 359.90504 * 18 17 16 20 20 C 1.38419 * 119.86318 * 359.84682 * 19 18 17 21 21 N 1.39401 * 122.94178 * 180.79509 * 20 19 18 22 22 C 1.46429 * 113.12056 * 339.60208 * 21 20 19 23 23 C 1.53381 * 108.66064 * 53.44311 * 22 21 20 24 24 C 1.50804 * 118.12869 * 179.63796 * 19 18 17 25 25 C 1.53051 * 109.53442 * 61.36943 * 12 11 10 26 26 C 1.46931 * 120.62974 * 151.82400 * 9 7 2 27 27 H 0.96998 * 119.99856 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.58352 * 113.80113 * 10 9 7 29 29 H 1.09001 * 109.69709 * 353.44140 * 10 9 7 30 30 H 1.09000 * 109.49544 * 185.41355 * 11 10 9 31 31 H 1.09003 * 109.52696 * 65.32909 * 11 10 9 32 32 H 1.08992 * 109.46128 * 301.36334 * 12 11 10 33 33 H 1.00897 * 110.99591 * 31.04465 * 13 12 11 34 34 H 1.09000 * 109.47028 * 60.00113 * 14 13 12 35 35 H 1.08996 * 109.46971 * 299.99919 * 14 13 12 36 36 H 1.08006 * 120.02483 * 359.75433 * 16 15 14 37 37 H 1.08004 * 120.06061 * 180.13171 * 17 16 15 38 38 H 1.07992 * 119.76272 * 179.97438 * 18 17 16 39 39 H 1.00907 * 111.00172 * 105.14172 * 21 20 19 40 40 H 1.08996 * 109.60519 * 293.69129 * 22 21 20 41 41 H 1.08997 * 109.60534 * 173.19747 * 22 21 20 42 42 H 1.09002 * 109.76005 * 172.18009 * 23 22 21 43 43 H 1.08997 * 109.81117 * 51.42918 * 23 22 21 44 44 H 1.09002 * 109.43883 * 284.47190 * 24 19 18 45 45 H 1.08992 * 109.43897 * 44.36159 * 24 19 18 46 46 H 1.08993 * 109.49973 * 58.58468 * 25 12 11 47 47 H 1.09002 * 109.49095 * 178.68428 * 25 12 11 48 48 H 1.08998 * 109.58581 * 246.19843 * 26 9 7 49 49 H 1.08997 * 109.58338 * 6.48410 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2226 -0.2718 9 7 1.3700 -2.3622 0.3462 10 6 0.2259 -2.3399 1.2679 11 6 0.4972 -3.3189 2.4145 12 6 0.8117 -4.7006 1.8365 13 7 1.0399 -5.6499 2.9341 14 6 0.7597 -7.0269 2.5060 15 6 1.0049 -7.9700 3.6556 16 6 2.1837 -8.6819 3.7180 17 6 2.4142 -9.5445 4.7737 18 6 1.4610 -9.6931 5.7618 19 6 0.2730 -8.9818 5.7052 20 6 0.0393 -8.1130 4.6532 21 7 -1.1248 -7.3544 4.5409 22 6 -2.2370 -7.8877 5.3300 23 6 -1.7696 -8.0643 6.7801 24 6 -0.7342 -9.1910 6.8079 25 6 2.0673 -4.6172 0.9653 26 6 1.8138 -3.6530 -0.1978 27 1 -0.4850 0.8400 -0.0004 28 1 -0.6771 -2.6405 0.7366 29 1 0.0966 -1.3345 1.6687 30 1 -0.3834 -3.3837 3.0535 31 1 1.3468 -2.9676 3.0002 32 1 -0.0283 -5.0407 1.2310 33 1 0.4911 -5.4043 3.7444 34 1 1.4145 -7.2895 1.6751 35 1 -0.2799 -7.1040 2.1877 36 1 2.9266 -8.5661 2.9427 37 1 3.3381 -10.1014 4.8254 38 1 1.6430 -10.3677 6.5852 39 1 -0.9497 -6.3874 4.7701 40 1 -2.5438 -8.8518 4.9246 41 1 -3.0750 -7.1914 5.2981 42 1 -2.6182 -8.3279 7.4113 43 1 -1.3174 -7.1393 7.1378 44 1 -1.2357 -10.1481 6.6643 45 1 -0.2233 -9.1905 7.7707 46 1 2.9022 -4.2534 1.5641 47 1 2.3040 -5.6062 0.5729 48 1 1.0401 -4.0606 -0.8485 49 1 2.7331 -3.5131 -0.7663 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894233717.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:17 Heat of formation + Delta-G solvation = 22.722550 kcal Electronic energy + Delta-G solvation = -26546.111238 eV Core-core repulsion = 23085.614166 eV Total energy + Delta-G solvation = -3460.497072 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.201 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.35797 -39.55399 -37.58730 -36.73124 -34.76205 -33.51161 -31.94832 -31.30951 -31.19471 -30.04007 -27.02614 -25.71041 -25.39026 -23.98720 -23.79630 -22.91262 -21.81811 -20.73660 -20.62836 -18.71259 -17.99465 -17.14035 -16.90759 -16.75336 -16.11116 -15.90381 -15.62587 -15.59400 -15.30695 -14.94358 -14.81883 -14.73112 -14.60442 -13.98953 -13.88755 -13.83341 -13.47260 -13.22455 -13.09587 -12.99537 -12.94547 -12.58162 -12.40256 -12.36005 -12.10962 -12.07351 -11.94460 -11.84582 -11.73864 -11.49661 -11.23491 -11.12807 -10.54163 -10.42432 -9.55560 -9.24580 -8.82638 -8.67704 -7.87171 -5.32391 0.45336 0.49897 1.46250 1.48044 1.59047 2.51850 2.73498 3.09639 3.25777 3.42325 3.70812 3.79977 3.85029 3.94273 3.99146 4.04597 4.15318 4.19364 4.40617 4.46108 4.47043 4.54049 4.55855 4.57075 4.70179 4.72157 4.74212 4.84206 4.87780 4.90275 4.99055 4.99956 5.06039 5.10623 5.12196 5.19999 5.25095 5.26688 5.41634 5.47186 5.53557 5.62125 5.65647 5.71465 5.74972 5.96425 6.12577 6.21263 6.39816 6.42210 6.54825 7.15502 7.86587 8.38859 9.19546 Molecular weight = 315.20amu Principal moments of inertia in cm(-1) A = 0.022750 B = 0.002754 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.494333 B =10163.938773 C =10847.807183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.052 4.052 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.262 4.262 8 H 0.065 0.935 9 N -0.611 5.611 10 C 0.181 3.819 11 C -0.125 4.125 12 C 0.109 3.891 13 N -0.674 5.674 14 C 0.112 3.888 15 C -0.100 4.100 16 C -0.103 4.103 17 C -0.142 4.142 18 C -0.110 4.110 19 C -0.137 4.137 20 C 0.107 3.893 21 N -0.646 5.646 22 C 0.057 3.943 23 C -0.153 4.153 24 C -0.076 4.076 25 C -0.103 4.103 26 C 0.141 3.859 27 H 0.250 0.750 28 H -0.006 1.006 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.030 0.970 33 H 0.336 0.664 34 H 0.071 0.929 35 H 0.039 0.961 36 H 0.127 0.873 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.355 0.645 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.061 0.939 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.053 0.947 47 H 0.070 0.930 48 H 0.011 0.989 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.640 -21.802 15.173 26.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.392 4.392 8 H 0.083 0.917 9 N -0.334 5.334 10 C 0.055 3.945 11 C -0.164 4.164 12 C -0.001 4.001 13 N -0.305 5.305 14 C -0.016 4.016 15 C -0.102 4.102 16 C -0.122 4.122 17 C -0.160 4.160 18 C -0.129 4.129 19 C -0.140 4.140 20 C 0.009 3.991 21 N -0.275 5.275 22 C -0.071 4.071 23 C -0.192 4.192 24 C -0.112 4.112 25 C -0.142 4.142 26 C 0.015 3.985 27 H 0.059 0.941 28 H 0.012 0.988 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.155 0.845 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.145 0.855 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.182 0.818 40 H 0.093 0.907 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.079 0.921 44 H 0.101 0.899 45 H 0.104 0.896 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.029 0.971 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.314 -21.969 14.470 26.339 hybrid contribution -0.502 1.399 0.312 1.519 sum -1.816 -20.570 14.782 25.396 Atomic orbital electron populations 1.70190 1.06643 1.25766 1.55560 1.25806 0.96087 1.01492 1.01293 0.85207 0.78607 0.79813 0.76824 1.19180 1.21845 1.21553 1.19550 0.92803 0.86099 1.40752 0.91750 1.44334 1.35972 1.02367 1.50762 1.20522 0.87664 0.97489 0.88809 1.22147 1.00628 0.95283 0.98370 1.21211 0.96016 0.91100 0.91742 1.60660 1.61443 1.01085 1.07305 1.20679 0.99279 0.86788 0.94874 1.19796 0.94957 0.99502 0.95990 1.21079 0.95993 0.96121 0.99014 1.21286 1.00293 0.99647 0.94789 1.21245 0.93006 0.99227 0.99419 1.20192 0.97354 1.00774 0.95688 1.18423 0.90227 0.97388 0.93090 1.56919 1.05406 1.06423 1.58794 1.22159 0.92565 1.01461 0.90947 1.22219 0.99901 0.98972 0.98102 1.20543 0.94909 0.99480 0.96315 1.21809 0.97413 0.98503 0.96519 1.21062 0.97147 0.86052 0.94200 0.94100 0.98752 0.92700 0.91447 0.92790 0.95183 0.84519 0.91010 0.94244 0.85471 0.84221 0.84282 0.81776 0.90731 0.88819 0.88804 0.92051 0.89928 0.89635 0.92831 0.91168 0.97104 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.21 11.19 21.65 0.24 -55.97 16 2 C -0.05 -2.94 4.92 84.86 0.42 -2.52 16 3 Si 0.97 45.66 29.59 68.60 2.03 47.69 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 7 C -0.26 -14.83 9.58 84.04 0.81 -14.02 16 8 H 0.06 3.58 7.89 -2.91 -0.02 3.55 16 9 N -0.61 -31.77 2.99 -699.07 -2.09 -33.86 16 10 C 0.18 8.98 5.30 86.36 0.46 9.43 16 11 C -0.12 -4.78 5.36 30.67 0.16 -4.62 16 12 C 0.11 3.69 2.46 44.95 0.11 3.80 16 13 N -0.67 -19.04 6.30 -495.44 -3.12 -22.16 16 14 C 0.11 2.90 5.15 85.56 0.44 3.34 16 15 C -0.10 -2.38 5.42 -19.64 -0.11 -2.49 16 16 C -0.10 -2.25 9.64 22.18 0.21 -2.04 16 17 C -0.14 -2.62 10.05 22.24 0.22 -2.39 16 18 C -0.11 -1.93 9.63 22.32 0.21 -1.71 16 19 C -0.14 -2.59 5.74 -19.71 -0.11 -2.70 16 20 C 0.11 2.34 6.10 38.30 0.23 2.58 16 21 N -0.65 -12.76 5.39 -339.03 -1.83 -14.59 16 22 C 0.06 0.85 6.61 86.52 0.57 1.42 16 23 C -0.15 -1.88 6.19 30.74 0.19 -1.68 16 24 C -0.08 -1.01 5.81 29.90 0.17 -0.83 16 25 C -0.10 -3.69 5.59 30.68 0.17 -3.52 16 26 C 0.14 6.13 6.52 86.36 0.56 6.69 16 27 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 28 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 29 H 0.05 3.06 6.07 -2.39 -0.01 3.05 16 30 H 0.07 2.25 8.10 -2.39 -0.02 2.23 16 31 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.03 1.08 7.80 -2.39 -0.02 1.06 16 33 H 0.34 8.88 6.86 -89.70 -0.62 8.27 16 34 H 0.07 1.86 7.25 -2.39 -0.02 1.85 16 35 H 0.04 1.08 7.61 -2.39 -0.02 1.07 16 36 H 0.13 2.57 8.02 -2.91 -0.02 2.55 16 37 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 38 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 39 H 0.36 6.83 7.44 -89.69 -0.67 6.16 16 40 H 0.07 1.17 8.11 -2.39 -0.02 1.15 16 41 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.07 2.19 7.42 -2.39 -0.02 2.17 16 48 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.05 2.30 7.93 -2.39 -0.02 2.28 16 Total: -1.00 -65.28 375.06 -0.38 -65.66 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: -0.35 Total: 24.49 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 4.73 Total: -11.27 kcal Atomic # 7 Polarization: -119.78 SS G_CDS: -6.80 Total: -126.58 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -65.28 -0.38 -65.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894233717.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.381 kcal (2) G-P(sol) polarization free energy of solvation -65.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds