Wall clock time and date at job start Tue Mar 31 2020 10:49:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09006 * 115.55153 * 2 1
4 4 C 1.53001 * 117.50135 * 214.32621 * 2 1 3
5 5 C 1.53000 * 117.49905 * 145.66631 * 2 1 3
6 6 H 1.08998 * 117.50193 * 0.02562 * 5 2 1
7 7 C 1.52999 * 117.50164 * 214.98044 * 5 2 1
8 8 H 1.08999 * 115.55059 * 274.32997 * 7 5 2
9 9 C 1.53002 * 117.50073 * 128.62297 * 7 5 2
10 10 C 1.52996 * 60.00008 * 252.51132 * 9 7 5
11 11 H 1.09005 * 117.52129 * 107.48158 * 10 9 7
12 12 N 1.46905 * 117.50132 * 252.51057 * 10 9 7
13 13 C 1.46898 * 110.99993 * 223.62319 * 12 10 9
14 14 C 1.50703 * 109.46859 * 179.97438 * 13 12 10
15 15 C 1.38288 * 119.97052 * 269.72165 * 14 13 12
16 16 C 1.38244 * 120.11294 * 179.76724 * 15 14 13
17 17 C 1.38167 * 120.05410 * 0.51483 * 16 15 14
18 18 C 1.38710 * 119.94083 * 359.73722 * 17 16 15
19 19 O 1.35910 * 120.05491 * 180.02562 * 18 17 16
20 20 C 1.42903 * 116.99669 * 359.97438 * 19 18 17
21 21 C 1.52998 * 109.46943 * 179.97438 * 20 19 18
22 22 C 1.50702 * 109.47194 * 179.97438 * 21 20 19
23 23 H 1.08002 * 119.99522 * 0.02562 * 22 21 20
24 24 C 1.37874 * 119.99802 * 180.02562 * 22 21 20
25 25 N 1.31515 * 120.00397 * 0.02562 * 24 22 21
26 26 Si 1.86802 * 119.99642 * 180.02562 * 24 22 21
27 27 H 1.48497 * 109.47143 * 359.97438 * 26 24 22
28 28 H 1.48504 * 109.47136 * 120.00266 * 26 24 22
29 29 H 1.48502 * 109.46769 * 240.00035 * 26 24 22
30 30 C 1.38122 * 119.97512 * 90.00236 * 14 13 12
31 31 H 1.09002 * 109.47153 * 154.41786 * 1 2 3
32 32 H 1.09001 * 109.46832 * 34.41977 * 1 2 3
33 33 H 1.09004 * 109.47261 * 274.41958 * 1 2 3
34 34 H 1.09002 * 117.49734 * 0.02562 * 4 2 1
35 35 H 1.09003 * 117.49880 * 144.99582 * 4 2 1
36 36 H 1.09000 * 117.49466 * 359.97438 * 9 7 5
37 37 H 1.08996 * 117.49961 * 145.02053 * 9 7 5
38 38 H 1.00900 * 111.00392 * 99.66375 * 12 10 9
39 39 H 1.08999 * 109.47109 * 299.99752 * 13 12 10
40 40 H 1.09001 * 109.47268 * 59.99889 * 13 12 10
41 41 H 1.08003 * 119.94461 * 0.02562 * 15 14 13
42 42 H 1.08002 * 119.97487 * 180.25078 * 16 15 14
43 43 H 1.07995 * 120.02922 * 179.72571 * 17 16 15
44 44 H 1.08998 * 109.47328 * 300.00161 * 20 19 18
45 45 H 1.09003 * 109.47119 * 60.00276 * 20 19 18
46 46 H 1.08998 * 109.47368 * 300.00293 * 21 20 19
47 47 H 1.09003 * 109.46859 * 60.00274 * 21 20 19
48 48 H 0.97001 * 120.00122 * 179.97438 * 25 24 22
49 49 H 1.08000 * 120.02254 * 359.97438 * 30 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 2.0001 0.9834 0.0000
4 6 2.2365 -1.1208 -0.7653
5 6 2.2364 -1.1207 0.7654
6 1 1.6113 -1.8582 1.2687
7 6 3.5490 -0.7754 1.4718
8 1 4.4454 -0.8381 0.8549
9 6 3.6785 -1.1568 2.9478
10 6 3.5071 0.3103 2.5490
11 1 2.5446 0.7789 2.7542
12 7 4.6784 1.1882 2.6730
13 6 4.3082 2.4788 3.2690
14 6 5.5326 3.3503 3.3806
15 6 6.3061 3.3114 4.5263
16 6 7.4327 4.1060 4.6298
17 6 7.7825 4.9491 3.5926
18 6 7.0053 4.9937 2.4445
19 8 7.3476 5.8218 1.4226
20 6 8.5204 6.6190 1.5987
21 6 8.7439 7.4794 0.3534
22 6 9.9804 8.3206 0.5393
23 1 10.5501 8.2484 1.4540
24 6 10.3842 9.1824 -0.4583
25 7 9.6902 9.2706 -1.5719
26 14 11.9173 10.2246 -0.2281
27 1 12.5130 9.9417 1.1024
28 1 12.9017 9.8986 -1.2912
29 1 11.5556 11.6624 -0.3124
30 6 5.8781 4.1914 2.3409
31 1 -0.3633 -0.9269 -0.4438
32 1 -0.3633 0.8478 -0.5809
33 1 -0.3634 0.0792 1.0246
34 1 1.6113 -1.8579 -1.2691
35 1 3.1714 -0.8747 -1.2688
36 1 2.8284 -1.6533 3.4158
37 1 4.6603 -1.4706 3.3023
38 1 5.1290 1.3184 1.7797
39 1 3.5677 2.9711 2.6386
40 1 3.8885 2.3138 4.2614
41 1 6.0321 2.6561 5.3398
42 1 8.0374 4.0709 5.5239
43 1 8.6601 5.5729 3.6757
44 1 8.3943 7.2637 2.4684
45 1 9.3823 5.9690 1.7501
46 1 8.8702 6.8344 -0.5161
47 1 7.8822 8.1294 0.2016
48 1 9.9742 9.8772 -2.2736
49 1 5.2713 4.2243 1.4481
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000922511531.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:49:21
Heat of formation + Delta-G solvation = 16.722344 kcal
Electronic energy + Delta-G solvation = -24516.620948 eV
Core-core repulsion = 21023.570936 eV
Total energy + Delta-G solvation = -3493.050012 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-39.86106 -39.27054 -37.58425 -36.55113 -33.90109 -33.35720 -30.91746 -30.33803
-29.13928 -28.85013 -25.59388 -24.75251 -23.71728 -22.30645 -21.72189 -21.65709
-21.14298 -20.35271 -19.95821 -17.65161 -16.33677 -16.30704 -15.99427 -15.64443
-15.54118 -15.31530 -14.81400 -14.59905 -14.46142 -14.35965 -13.73613 -13.51652
-13.11965 -13.07852 -12.70318 -12.59945 -12.40980 -12.33195 -12.06127 -11.92327
-11.57974 -11.41138 -11.36901 -11.32765 -11.13893 -10.92757 -10.86892 -10.68816
-10.46110 -10.27266 -9.87240 -9.78195 -9.66922 -9.29811 -8.79008 -8.47252
-8.45463 -7.83984 -6.11758 -4.16356 1.42307 1.69530 3.19742 3.25608
3.32680 3.36351 3.57269 3.74734 3.84681 4.11926 4.24994 4.39903
4.44426 4.59192 4.74196 4.78424 4.87635 4.94716 4.98406 5.02497
5.14361 5.23942 5.24755 5.28948 5.36710 5.41088 5.43292 5.47337
5.50482 5.52634 5.64640 5.67416 5.69695 5.81770 5.85107 5.92625
5.99123 6.02554 6.05773 6.17753 6.54188 6.55774 6.69733 6.72431
6.79734 6.98598 7.09793 7.49557 7.62508 7.80306 8.05215 8.22571
8.89459 9.48094 10.99851
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.015581 B = 0.002033 C = 0.001857
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1796.631777 B =13767.389013 C =15076.131415
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.152 4.152
3 H 0.103 0.897
4 C -0.172 4.172
5 C -0.121 4.121
6 H 0.104 0.896
7 C -0.135 4.135
8 H 0.108 0.892
9 C -0.160 4.160
10 C 0.026 3.974
11 H 0.101 0.899
12 N -0.654 5.654
13 C 0.105 3.895
14 C -0.053 4.053
15 C -0.148 4.148
16 C -0.082 4.082
17 C -0.210 4.210
18 C 0.145 3.855
19 O -0.317 6.317
20 C 0.065 3.935
21 C 0.025 3.975
22 C -0.526 4.526
23 H 0.059 0.941
24 C 0.060 3.940
25 N -0.889 5.889
26 Si 0.899 3.101
27 H -0.272 1.272
28 H -0.282 1.282
29 H -0.282 1.282
30 C -0.156 4.156
31 H 0.055 0.945
32 H 0.060 0.940
33 H 0.058 0.942
34 H 0.093 0.907
35 H 0.094 0.906
36 H 0.092 0.908
37 H 0.099 0.901
38 H 0.346 0.654
39 H 0.041 0.959
40 H 0.082 0.918
41 H 0.119 0.881
42 H 0.121 0.879
43 H 0.130 0.870
44 H 0.050 0.950
45 H 0.050 0.950
46 H 0.028 0.972
47 H 0.027 0.973
48 H 0.263 0.737
49 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.279 -20.966 8.873 27.987
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C -0.170 4.170
3 H 0.121 0.879
4 C -0.209 4.209
5 C -0.139 4.139
6 H 0.122 0.878
7 C -0.154 4.154
8 H 0.126 0.874
9 C -0.198 4.198
10 C -0.084 4.084
11 H 0.118 0.882
12 N -0.285 5.285
13 C -0.023 4.023
14 C -0.053 4.053
15 C -0.167 4.167
16 C -0.100 4.100
17 C -0.229 4.229
18 C 0.098 3.902
19 O -0.230 6.230
20 C -0.009 4.009
21 C -0.012 4.012
22 C -0.564 4.564
23 H 0.077 0.923
24 C -0.143 4.143
25 N -0.528 5.528
26 Si 0.726 3.274
27 H -0.196 1.196
28 H -0.208 1.208
29 H -0.208 1.208
30 C -0.175 4.175
31 H 0.074 0.926
32 H 0.079 0.921
33 H 0.077 0.923
34 H 0.112 0.888
35 H 0.113 0.887
36 H 0.111 0.889
37 H 0.118 0.882
38 H 0.166 0.834
39 H 0.060 0.940
40 H 0.100 0.900
41 H 0.137 0.863
42 H 0.139 0.861
43 H 0.147 0.853
44 H 0.069 0.931
45 H 0.069 0.931
46 H 0.046 0.954
47 H 0.046 0.954
48 H 0.072 0.928
49 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges -16.166 -21.080 9.100 28.081
hybrid contribution 0.687 1.084 -0.565 1.402
sum -15.479 -19.996 8.535 26.689
Atomic orbital electron populations
1.21369 0.92873 1.01965 1.01797 1.22406 0.95109 0.94805 1.04692
0.87896 1.23166 1.02696 1.01374 0.93655 1.21883 0.97036 1.01514
0.93473 0.87753 1.22172 0.97371 1.04375 0.91465 0.87442 1.23258
1.03226 0.97505 0.95807 1.22485 0.93616 0.89370 1.02977 0.88169
1.60269 1.24838 1.13188 1.30179 1.20866 0.93587 0.87590 1.00244
1.19377 0.96328 0.95842 0.93787 1.20768 0.96371 1.01389 0.98189
1.20903 0.96279 0.94958 0.97825 1.21402 1.02553 1.04099 0.94830
1.19142 0.93232 0.90248 0.87594 1.86171 1.46452 1.51840 1.38518
1.23328 0.83115 0.91944 1.02484 1.19130 0.97542 0.93718 0.90834
1.21011 1.09778 1.22987 1.02621 0.92295 1.24998 0.97260 0.96958
0.95044 1.69986 1.39070 1.37419 1.06284 0.86428 0.82659 0.80022
0.78256 1.19627 1.20823 1.20836 1.20271 0.97796 0.99328 1.00135
0.92622 0.92067 0.92295 0.88832 0.88721 0.88919 0.88210 0.83361
0.94047 0.89981 0.86335 0.86149 0.85263 0.93133 0.93127 0.95410
0.95415 0.92753 0.85815
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.76 10.19 37.16 0.38 -0.38 16
2 C -0.15 -1.10 6.05 -90.62 -0.55 -1.65 16
3 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16
4 C -0.17 -1.21 9.90 -26.69 -0.26 -1.47 16
5 C -0.12 -0.86 5.59 -90.58 -0.51 -1.36 16
6 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16
7 C -0.13 -1.05 5.67 -90.62 -0.51 -1.56 16
8 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16
9 C -0.16 -1.23 10.18 -26.73 -0.27 -1.51 16
10 C 0.03 0.22 5.90 -67.71 -0.40 -0.18 16
11 H 0.10 0.82 7.90 -51.93 -0.41 0.41 16
12 N -0.65 -6.40 6.73 -107.99 -0.73 -7.13 16
13 C 0.11 1.06 5.66 -4.98 -0.03 1.03 16
14 C -0.05 -0.67 5.39 -104.64 -0.56 -1.23 16
15 C -0.15 -1.85 9.70 -39.56 -0.38 -2.23 16
16 C -0.08 -1.08 10.04 -39.61 -0.40 -1.48 16
17 C -0.21 -3.31 9.04 -39.43 -0.36 -3.67 16
18 C 0.14 2.53 6.69 -39.22 -0.26 2.27 16
19 O -0.32 -6.56 10.14 -19.46 -0.20 -6.76 16
20 C 0.07 1.41 4.68 37.16 0.17 1.58 16
21 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16
22 C -0.53 -14.69 9.11 -34.44 -0.31 -15.01 16
23 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16
24 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16
25 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16
26 Si 0.90 21.30 29.54 -169.99 -5.02 16.27 16
27 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16
28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
29 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
30 C -0.16 -2.34 9.64 -39.44 -0.38 -2.72 16
31 H 0.05 0.31 7.90 -51.93 -0.41 -0.10 16
32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
34 H 0.09 0.58 8.05 -51.93 -0.42 0.16 16
35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16
36 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16
37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16
38 H 0.35 3.51 8.68 -39.29 -0.34 3.17 16
39 H 0.04 0.40 8.09 -51.93 -0.42 -0.02 16
40 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16
41 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16
42 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16
43 H 0.13 2.01 6.30 -52.49 -0.33 1.68 16
44 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16
45 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16
46 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16
47 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16
48 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16
49 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16
LS Contribution 407.20 15.07 6.14 6.14
Total: -1.00 -29.76 407.20 -12.54 -42.30
By element:
Atomic # 1 Polarization: 10.98 SS G_CDS: -8.58 Total: 2.40 kcal
Atomic # 6 Polarization: -22.58 SS G_CDS: -4.88 Total: -27.46 kcal
Atomic # 7 Polarization: -32.90 SS G_CDS: 0.01 Total: -32.89 kcal
Atomic # 8 Polarization: -6.56 SS G_CDS: -0.20 Total: -6.76 kcal
Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal
Total LS contribution 6.14 Total: 6.14 kcal
Total: -29.76 -12.54 -42.30 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000922511531.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 59.021 kcal
(2) G-P(sol) polarization free energy of solvation -29.759 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.262 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.540 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.299 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.722 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds