Wall clock time and date at job start Tue Mar 31 2020 10:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 115.55153 * 2 1 4 4 C 1.53001 * 117.50135 * 214.32621 * 2 1 3 5 5 C 1.53000 * 117.49905 * 145.66631 * 2 1 3 6 6 H 1.08998 * 117.50193 * 0.02562 * 5 2 1 7 7 C 1.52999 * 117.50164 * 214.98044 * 5 2 1 8 8 H 1.08999 * 115.55059 * 274.32997 * 7 5 2 9 9 C 1.53002 * 117.50073 * 128.62297 * 7 5 2 10 10 C 1.52996 * 60.00008 * 252.51132 * 9 7 5 11 11 H 1.09005 * 117.52129 * 107.48158 * 10 9 7 12 12 N 1.46905 * 117.50132 * 252.51057 * 10 9 7 13 13 C 1.46898 * 110.99993 * 223.62319 * 12 10 9 14 14 C 1.50703 * 109.46859 * 179.97438 * 13 12 10 15 15 C 1.38288 * 119.97052 * 269.72165 * 14 13 12 16 16 C 1.38244 * 120.11294 * 179.76724 * 15 14 13 17 17 C 1.38167 * 120.05410 * 0.51483 * 16 15 14 18 18 C 1.38710 * 119.94083 * 359.73722 * 17 16 15 19 19 O 1.35910 * 120.05491 * 180.02562 * 18 17 16 20 20 C 1.42903 * 116.99669 * 359.97438 * 19 18 17 21 21 C 1.52998 * 109.46943 * 179.97438 * 20 19 18 22 22 C 1.50702 * 109.47194 * 179.97438 * 21 20 19 23 23 H 1.08002 * 119.99522 * 0.02562 * 22 21 20 24 24 C 1.37874 * 119.99802 * 180.02562 * 22 21 20 25 25 N 1.31515 * 120.00397 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99642 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47143 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47136 * 120.00266 * 26 24 22 29 29 H 1.48502 * 109.46769 * 240.00035 * 26 24 22 30 30 C 1.38122 * 119.97512 * 90.00236 * 14 13 12 31 31 H 1.09002 * 109.47153 * 154.41786 * 1 2 3 32 32 H 1.09001 * 109.46832 * 34.41977 * 1 2 3 33 33 H 1.09004 * 109.47261 * 274.41958 * 1 2 3 34 34 H 1.09002 * 117.49734 * 0.02562 * 4 2 1 35 35 H 1.09003 * 117.49880 * 144.99582 * 4 2 1 36 36 H 1.09000 * 117.49466 * 359.97438 * 9 7 5 37 37 H 1.08996 * 117.49961 * 145.02053 * 9 7 5 38 38 H 1.00900 * 111.00392 * 99.66375 * 12 10 9 39 39 H 1.08999 * 109.47109 * 299.99752 * 13 12 10 40 40 H 1.09001 * 109.47268 * 59.99889 * 13 12 10 41 41 H 1.08003 * 119.94461 * 0.02562 * 15 14 13 42 42 H 1.08002 * 119.97487 * 180.25078 * 16 15 14 43 43 H 1.07995 * 120.02922 * 179.72571 * 17 16 15 44 44 H 1.08998 * 109.47328 * 300.00161 * 20 19 18 45 45 H 1.09003 * 109.47119 * 60.00276 * 20 19 18 46 46 H 1.08998 * 109.47368 * 300.00293 * 21 20 19 47 47 H 1.09003 * 109.46859 * 60.00274 * 21 20 19 48 48 H 0.97001 * 120.00122 * 179.97438 * 25 24 22 49 49 H 1.08000 * 120.02254 * 359.97438 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1208 -0.7653 5 6 2.2364 -1.1207 0.7654 6 1 1.6113 -1.8582 1.2687 7 6 3.5490 -0.7754 1.4718 8 1 4.4454 -0.8381 0.8549 9 6 3.6785 -1.1568 2.9478 10 6 3.5071 0.3103 2.5490 11 1 2.5446 0.7789 2.7542 12 7 4.6784 1.1882 2.6730 13 6 4.3082 2.4788 3.2690 14 6 5.5326 3.3503 3.3806 15 6 6.3061 3.3114 4.5263 16 6 7.4327 4.1060 4.6298 17 6 7.7825 4.9491 3.5926 18 6 7.0053 4.9937 2.4445 19 8 7.3476 5.8218 1.4226 20 6 8.5204 6.6190 1.5987 21 6 8.7439 7.4794 0.3534 22 6 9.9804 8.3206 0.5393 23 1 10.5501 8.2484 1.4540 24 6 10.3842 9.1824 -0.4583 25 7 9.6902 9.2706 -1.5719 26 14 11.9173 10.2246 -0.2281 27 1 12.5130 9.9417 1.1024 28 1 12.9017 9.8986 -1.2912 29 1 11.5556 11.6624 -0.3124 30 6 5.8781 4.1914 2.3409 31 1 -0.3633 -0.9269 -0.4438 32 1 -0.3633 0.8478 -0.5809 33 1 -0.3634 0.0792 1.0246 34 1 1.6113 -1.8579 -1.2691 35 1 3.1714 -0.8747 -1.2688 36 1 2.8284 -1.6533 3.4158 37 1 4.6603 -1.4706 3.3023 38 1 5.1290 1.3184 1.7797 39 1 3.5677 2.9711 2.6386 40 1 3.8885 2.3138 4.2614 41 1 6.0321 2.6561 5.3398 42 1 8.0374 4.0709 5.5239 43 1 8.6601 5.5729 3.6757 44 1 8.3943 7.2637 2.4684 45 1 9.3823 5.9690 1.7501 46 1 8.8702 6.8344 -0.5161 47 1 7.8822 8.1294 0.2016 48 1 9.9742 9.8772 -2.2736 49 1 5.2713 4.2243 1.4481 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922511531.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:21 Heat of formation + Delta-G solvation = 16.722344 kcal Electronic energy + Delta-G solvation = -24516.620948 eV Core-core repulsion = 21023.570936 eV Total energy + Delta-G solvation = -3493.050012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.86106 -39.27054 -37.58425 -36.55113 -33.90109 -33.35720 -30.91746 -30.33803 -29.13928 -28.85013 -25.59388 -24.75251 -23.71728 -22.30645 -21.72189 -21.65709 -21.14298 -20.35271 -19.95821 -17.65161 -16.33677 -16.30704 -15.99427 -15.64443 -15.54118 -15.31530 -14.81400 -14.59905 -14.46142 -14.35965 -13.73613 -13.51652 -13.11965 -13.07852 -12.70318 -12.59945 -12.40980 -12.33195 -12.06127 -11.92327 -11.57974 -11.41138 -11.36901 -11.32765 -11.13893 -10.92757 -10.86892 -10.68816 -10.46110 -10.27266 -9.87240 -9.78195 -9.66922 -9.29811 -8.79008 -8.47252 -8.45463 -7.83984 -6.11758 -4.16356 1.42307 1.69530 3.19742 3.25608 3.32680 3.36351 3.57269 3.74734 3.84681 4.11926 4.24994 4.39903 4.44426 4.59192 4.74196 4.78424 4.87635 4.94716 4.98406 5.02497 5.14361 5.23942 5.24755 5.28948 5.36710 5.41088 5.43292 5.47337 5.50482 5.52634 5.64640 5.67416 5.69695 5.81770 5.85107 5.92625 5.99123 6.02554 6.05773 6.17753 6.54188 6.55774 6.69733 6.72431 6.79734 6.98598 7.09793 7.49557 7.62508 7.80306 8.05215 8.22571 8.89459 9.48094 10.99851 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015581 B = 0.002033 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.631777 B =13767.389013 C =15076.131415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.152 4.152 3 H 0.103 0.897 4 C -0.172 4.172 5 C -0.121 4.121 6 H 0.104 0.896 7 C -0.135 4.135 8 H 0.108 0.892 9 C -0.160 4.160 10 C 0.026 3.974 11 H 0.101 0.899 12 N -0.654 5.654 13 C 0.105 3.895 14 C -0.053 4.053 15 C -0.148 4.148 16 C -0.082 4.082 17 C -0.210 4.210 18 C 0.145 3.855 19 O -0.317 6.317 20 C 0.065 3.935 21 C 0.025 3.975 22 C -0.526 4.526 23 H 0.059 0.941 24 C 0.060 3.940 25 N -0.889 5.889 26 Si 0.899 3.101 27 H -0.272 1.272 28 H -0.282 1.282 29 H -0.282 1.282 30 C -0.156 4.156 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.346 0.654 39 H 0.041 0.959 40 H 0.082 0.918 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.130 0.870 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.028 0.972 47 H 0.027 0.973 48 H 0.263 0.737 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.279 -20.966 8.873 27.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.170 4.170 3 H 0.121 0.879 4 C -0.209 4.209 5 C -0.139 4.139 6 H 0.122 0.878 7 C -0.154 4.154 8 H 0.126 0.874 9 C -0.198 4.198 10 C -0.084 4.084 11 H 0.118 0.882 12 N -0.285 5.285 13 C -0.023 4.023 14 C -0.053 4.053 15 C -0.167 4.167 16 C -0.100 4.100 17 C -0.229 4.229 18 C 0.098 3.902 19 O -0.230 6.230 20 C -0.009 4.009 21 C -0.012 4.012 22 C -0.564 4.564 23 H 0.077 0.923 24 C -0.143 4.143 25 N -0.528 5.528 26 Si 0.726 3.274 27 H -0.196 1.196 28 H -0.208 1.208 29 H -0.208 1.208 30 C -0.175 4.175 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.166 0.834 39 H 0.060 0.940 40 H 0.100 0.900 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.147 0.853 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.046 0.954 47 H 0.046 0.954 48 H 0.072 0.928 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.166 -21.080 9.100 28.081 hybrid contribution 0.687 1.084 -0.565 1.402 sum -15.479 -19.996 8.535 26.689 Atomic orbital electron populations 1.21369 0.92873 1.01965 1.01797 1.22406 0.95109 0.94805 1.04692 0.87896 1.23166 1.02696 1.01374 0.93655 1.21883 0.97036 1.01514 0.93473 0.87753 1.22172 0.97371 1.04375 0.91465 0.87442 1.23258 1.03226 0.97505 0.95807 1.22485 0.93616 0.89370 1.02977 0.88169 1.60269 1.24838 1.13188 1.30179 1.20866 0.93587 0.87590 1.00244 1.19377 0.96328 0.95842 0.93787 1.20768 0.96371 1.01389 0.98189 1.20903 0.96279 0.94958 0.97825 1.21402 1.02553 1.04099 0.94830 1.19142 0.93232 0.90248 0.87594 1.86171 1.46452 1.51840 1.38518 1.23328 0.83115 0.91944 1.02484 1.19130 0.97542 0.93718 0.90834 1.21011 1.09778 1.22987 1.02621 0.92295 1.24998 0.97260 0.96958 0.95044 1.69986 1.39070 1.37419 1.06284 0.86428 0.82659 0.80022 0.78256 1.19627 1.20823 1.20836 1.20271 0.97796 0.99328 1.00135 0.92622 0.92067 0.92295 0.88832 0.88721 0.88919 0.88210 0.83361 0.94047 0.89981 0.86335 0.86149 0.85263 0.93133 0.93127 0.95410 0.95415 0.92753 0.85815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 10.19 37.16 0.38 -0.38 16 2 C -0.15 -1.10 6.05 -90.62 -0.55 -1.65 16 3 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.17 -1.21 9.90 -26.69 -0.26 -1.47 16 5 C -0.12 -0.86 5.59 -90.58 -0.51 -1.36 16 6 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 7 C -0.13 -1.05 5.67 -90.62 -0.51 -1.56 16 8 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 9 C -0.16 -1.23 10.18 -26.73 -0.27 -1.51 16 10 C 0.03 0.22 5.90 -67.71 -0.40 -0.18 16 11 H 0.10 0.82 7.90 -51.93 -0.41 0.41 16 12 N -0.65 -6.40 6.73 -107.99 -0.73 -7.13 16 13 C 0.11 1.06 5.66 -4.98 -0.03 1.03 16 14 C -0.05 -0.67 5.39 -104.64 -0.56 -1.23 16 15 C -0.15 -1.85 9.70 -39.56 -0.38 -2.23 16 16 C -0.08 -1.08 10.04 -39.61 -0.40 -1.48 16 17 C -0.21 -3.31 9.04 -39.43 -0.36 -3.67 16 18 C 0.14 2.53 6.69 -39.22 -0.26 2.27 16 19 O -0.32 -6.56 10.14 -19.46 -0.20 -6.76 16 20 C 0.07 1.41 4.68 37.16 0.17 1.58 16 21 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16 22 C -0.53 -14.69 9.11 -34.44 -0.31 -15.01 16 23 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 24 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 25 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 26 Si 0.90 21.30 29.54 -169.99 -5.02 16.27 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 29 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 30 C -0.16 -2.34 9.64 -39.44 -0.38 -2.72 16 31 H 0.05 0.31 7.90 -51.93 -0.41 -0.10 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.58 8.05 -51.93 -0.42 0.16 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.35 3.51 8.68 -39.29 -0.34 3.17 16 39 H 0.04 0.40 8.09 -51.93 -0.42 -0.02 16 40 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 41 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 42 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 43 H 0.13 2.01 6.30 -52.49 -0.33 1.68 16 44 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 45 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 46 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 49 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 407.20 15.07 6.14 6.14 Total: -1.00 -29.76 407.20 -12.54 -42.30 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -8.58 Total: 2.40 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -4.88 Total: -27.46 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.01 Total: -32.89 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.20 Total: -6.76 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -29.76 -12.54 -42.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922511531.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.021 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds