Wall clock time and date at job start Tue Mar 31 2020 10:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 115.55153 * 2 1 4 4 C 1.53001 * 117.50135 * 214.32621 * 2 1 3 5 5 C 1.53000 * 117.49905 * 145.66631 * 2 1 3 6 6 H 1.08998 * 117.50193 * 0.02562 * 5 2 1 7 7 C 1.52999 * 117.50164 * 214.98044 * 5 2 1 8 8 H 1.08999 * 115.55059 * 274.32997 * 7 5 2 9 9 C 1.53002 * 117.50073 * 128.62297 * 7 5 2 10 10 C 1.52996 * 60.00008 * 252.51132 * 9 7 5 11 11 H 1.09005 * 117.52129 * 107.48158 * 10 9 7 12 12 N 1.46905 * 117.50132 * 252.51057 * 10 9 7 13 13 C 1.46898 * 110.99993 * 223.62319 * 12 10 9 14 14 C 1.50703 * 109.46859 * 179.97438 * 13 12 10 15 15 C 1.38288 * 119.97052 * 269.72165 * 14 13 12 16 16 C 1.38244 * 120.11294 * 179.76724 * 15 14 13 17 17 C 1.38167 * 120.05410 * 0.51483 * 16 15 14 18 18 C 1.38710 * 119.94083 * 359.73722 * 17 16 15 19 19 O 1.35910 * 120.05491 * 180.02562 * 18 17 16 20 20 C 1.42903 * 116.99669 * 359.97438 * 19 18 17 21 21 C 1.52998 * 109.46943 * 179.97438 * 20 19 18 22 22 C 1.50702 * 109.47194 * 179.97438 * 21 20 19 23 23 H 1.08002 * 119.99522 * 0.02562 * 22 21 20 24 24 C 1.37874 * 119.99802 * 180.02562 * 22 21 20 25 25 N 1.31515 * 120.00397 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99642 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47143 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47136 * 120.00266 * 26 24 22 29 29 H 1.48502 * 109.46769 * 240.00035 * 26 24 22 30 30 C 1.38122 * 119.97512 * 90.00236 * 14 13 12 31 31 H 1.09002 * 109.47153 * 154.41786 * 1 2 3 32 32 H 1.09001 * 109.46832 * 34.41977 * 1 2 3 33 33 H 1.09004 * 109.47261 * 274.41958 * 1 2 3 34 34 H 1.09002 * 117.49734 * 0.02562 * 4 2 1 35 35 H 1.09003 * 117.49880 * 144.99582 * 4 2 1 36 36 H 1.09000 * 117.49466 * 359.97438 * 9 7 5 37 37 H 1.08996 * 117.49961 * 145.02053 * 9 7 5 38 38 H 1.00900 * 111.00392 * 99.66375 * 12 10 9 39 39 H 1.08999 * 109.47109 * 299.99752 * 13 12 10 40 40 H 1.09001 * 109.47268 * 59.99889 * 13 12 10 41 41 H 1.08003 * 119.94461 * 0.02562 * 15 14 13 42 42 H 1.08002 * 119.97487 * 180.25078 * 16 15 14 43 43 H 1.07995 * 120.02922 * 179.72571 * 17 16 15 44 44 H 1.08998 * 109.47328 * 300.00161 * 20 19 18 45 45 H 1.09003 * 109.47119 * 60.00276 * 20 19 18 46 46 H 1.08998 * 109.47368 * 300.00293 * 21 20 19 47 47 H 1.09003 * 109.46859 * 60.00274 * 21 20 19 48 48 H 0.97001 * 120.00122 * 179.97438 * 25 24 22 49 49 H 1.08000 * 120.02254 * 359.97438 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1208 -0.7653 5 6 2.2364 -1.1207 0.7654 6 1 1.6113 -1.8582 1.2687 7 6 3.5490 -0.7754 1.4718 8 1 4.4454 -0.8381 0.8549 9 6 3.6785 -1.1568 2.9478 10 6 3.5071 0.3103 2.5490 11 1 2.5446 0.7789 2.7542 12 7 4.6784 1.1882 2.6730 13 6 4.3082 2.4788 3.2690 14 6 5.5326 3.3503 3.3806 15 6 6.3061 3.3114 4.5263 16 6 7.4327 4.1060 4.6298 17 6 7.7825 4.9491 3.5926 18 6 7.0053 4.9937 2.4445 19 8 7.3476 5.8218 1.4226 20 6 8.5204 6.6190 1.5987 21 6 8.7439 7.4794 0.3534 22 6 9.9804 8.3206 0.5393 23 1 10.5501 8.2484 1.4540 24 6 10.3842 9.1824 -0.4583 25 7 9.6902 9.2706 -1.5719 26 14 11.9173 10.2246 -0.2281 27 1 12.5130 9.9417 1.1024 28 1 12.9017 9.8986 -1.2912 29 1 11.5556 11.6624 -0.3124 30 6 5.8781 4.1914 2.3409 31 1 -0.3633 -0.9269 -0.4438 32 1 -0.3633 0.8478 -0.5809 33 1 -0.3634 0.0792 1.0246 34 1 1.6113 -1.8579 -1.2691 35 1 3.1714 -0.8747 -1.2688 36 1 2.8284 -1.6533 3.4158 37 1 4.6603 -1.4706 3.3023 38 1 5.1290 1.3184 1.7797 39 1 3.5677 2.9711 2.6386 40 1 3.8885 2.3138 4.2614 41 1 6.0321 2.6561 5.3398 42 1 8.0374 4.0709 5.5239 43 1 8.6601 5.5729 3.6757 44 1 8.3943 7.2637 2.4684 45 1 9.3823 5.9690 1.7501 46 1 8.8702 6.8344 -0.5161 47 1 7.8822 8.1294 0.2016 48 1 9.9742 9.8772 -2.2736 49 1 5.2713 4.2243 1.4481 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922511531.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:20 Heat of formation + Delta-G solvation = 2.339580 kcal Electronic energy + Delta-G solvation = -24517.244631 eV Core-core repulsion = 21023.570936 eV Total energy + Delta-G solvation = -3493.673695 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.10252 -39.94084 -38.79461 -37.30344 -35.51050 -34.67761 -32.59796 -31.48434 -30.51370 -29.38648 -27.13269 -26.13070 -24.31325 -23.52711 -23.33225 -22.29293 -21.78961 -21.55195 -20.71994 -19.12911 -18.16723 -17.11363 -17.00089 -16.91324 -16.83566 -16.62975 -16.32642 -15.58747 -15.37645 -15.13918 -14.54230 -14.39186 -14.35728 -14.28002 -14.00775 -13.98066 -13.56343 -13.10481 -13.04189 -13.00738 -12.77591 -12.61423 -12.55215 -12.48669 -12.31845 -12.14382 -11.97910 -11.75916 -11.61605 -11.57123 -11.46743 -11.36596 -10.86534 -10.64583 -10.37834 -9.85408 -9.21873 -9.10480 -8.28469 -6.42219 0.31963 0.53255 1.39968 1.40945 1.54523 2.25433 2.49188 2.60767 2.71217 3.03070 3.05945 3.29905 3.64822 3.82762 3.87550 3.89966 4.02187 4.10588 4.14474 4.21235 4.24893 4.27389 4.37606 4.40552 4.42212 4.46816 4.55918 4.57687 4.62425 4.71785 4.79100 4.83752 4.90842 4.94045 4.95101 5.05783 5.10366 5.18508 5.29710 5.29967 5.33027 5.41506 5.44244 5.44527 5.51643 5.63383 5.66981 5.89023 6.05419 6.08392 6.28968 6.55657 6.72741 7.28020 8.84895 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015581 B = 0.002033 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.631777 B =13767.389013 C =15076.131415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.156 4.156 3 H 0.091 0.909 4 C -0.175 4.175 5 C -0.117 4.117 6 H 0.114 0.886 7 C -0.134 4.134 8 H 0.098 0.902 9 C -0.153 4.153 10 C 0.022 3.978 11 H 0.106 0.894 12 N -0.659 5.659 13 C 0.110 3.890 14 C -0.046 4.046 15 C -0.139 4.139 16 C -0.079 4.079 17 C -0.222 4.222 18 C 0.106 3.894 19 O -0.342 6.342 20 C 0.085 3.915 21 C 0.028 3.972 22 C -0.545 4.545 23 H 0.071 0.929 24 C 0.000 4.000 25 N -0.931 5.931 26 Si 0.977 3.023 27 H -0.257 1.257 28 H -0.277 1.277 29 H -0.276 1.276 30 C -0.164 4.164 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.341 0.659 39 H 0.044 0.956 40 H 0.098 0.902 41 H 0.148 0.852 42 H 0.151 0.849 43 H 0.126 0.874 44 H 0.060 0.940 45 H 0.059 0.941 46 H -0.002 1.002 47 H -0.002 1.002 48 H 0.267 0.733 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.383 -22.245 11.190 29.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.175 4.175 3 H 0.109 0.891 4 C -0.212 4.212 5 C -0.136 4.136 6 H 0.132 0.868 7 C -0.154 4.154 8 H 0.116 0.884 9 C -0.191 4.191 10 C -0.088 4.088 11 H 0.123 0.877 12 N -0.289 5.289 13 C -0.018 4.018 14 C -0.047 4.047 15 C -0.158 4.158 16 C -0.097 4.097 17 C -0.241 4.241 18 C 0.061 3.939 19 O -0.257 6.257 20 C 0.011 3.989 21 C -0.009 4.009 22 C -0.583 4.583 23 H 0.089 0.911 24 C -0.198 4.198 25 N -0.570 5.570 26 Si 0.800 3.200 27 H -0.181 1.181 28 H -0.202 1.202 29 H -0.202 1.202 30 C -0.183 4.183 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.125 0.875 37 H 0.112 0.888 38 H 0.161 0.839 39 H 0.062 0.938 40 H 0.116 0.884 41 H 0.166 0.834 42 H 0.168 0.832 43 H 0.144 0.856 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.016 0.984 47 H 0.017 0.983 48 H 0.076 0.924 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.286 -22.385 11.439 29.953 hybrid contribution 0.614 1.358 -1.252 1.946 sum -15.672 -21.027 10.187 28.134 Atomic orbital electron populations 1.21366 0.91963 1.02311 1.02180 1.22417 0.95821 0.94276 1.04951 0.89114 1.23220 1.02635 1.01583 0.93790 1.21891 0.96709 1.01531 0.93420 0.86844 1.22142 0.97429 1.04194 0.91592 0.88366 1.23289 1.03485 0.96810 0.95516 1.22509 0.93250 0.89434 1.03649 0.87666 1.60292 1.25603 1.13064 1.29980 1.20863 0.92305 0.87343 1.01271 1.19660 0.96962 0.95045 0.93007 1.21178 0.95410 1.00681 0.98531 1.21252 0.96699 0.93799 0.97916 1.21509 1.02469 1.05021 0.95091 1.19480 0.95130 0.91417 0.87877 1.86080 1.46098 1.52978 1.40549 1.22850 0.84214 0.91870 0.99985 1.18970 0.96314 0.93490 0.92144 1.21426 1.10315 1.23334 1.03230 0.91104 1.26062 1.00905 0.98333 0.94530 1.70127 1.41157 1.38399 1.07343 0.85220 0.78023 0.77874 0.78836 1.18106 1.20205 1.20198 1.20426 0.97233 0.99575 1.01066 0.91950 0.92139 0.91818 0.87848 0.89360 0.87494 0.88816 0.83938 0.93757 0.88356 0.83410 0.83165 0.85566 0.92221 0.92290 0.98373 0.98347 0.92420 0.85960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 10.19 71.98 0.73 -0.61 16 2 C -0.16 -2.14 6.05 -10.79 -0.07 -2.20 16 3 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 4 C -0.18 -2.33 9.90 30.62 0.30 -2.02 16 5 C -0.12 -1.51 5.59 -10.77 -0.06 -1.57 16 6 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 7 C -0.13 -1.94 5.67 -10.79 -0.06 -2.00 16 8 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 9 C -0.15 -2.07 10.18 30.59 0.31 -1.75 16 10 C 0.02 0.33 5.90 44.91 0.27 0.59 16 11 H 0.11 1.50 7.90 -2.38 -0.02 1.48 16 12 N -0.66 -11.91 6.73 -495.57 -3.34 -15.25 16 13 C 0.11 2.00 5.66 85.56 0.48 2.49 16 14 C -0.05 -1.09 5.39 -19.88 -0.11 -1.20 16 15 C -0.14 -3.07 9.70 22.28 0.22 -2.85 16 16 C -0.08 -1.90 10.04 22.25 0.22 -1.68 16 17 C -0.22 -6.89 9.04 22.37 0.20 -6.69 16 18 C 0.11 3.80 6.69 22.50 0.15 3.95 16 19 O -0.34 -14.89 10.14 -92.53 -0.94 -15.83 16 20 C 0.09 3.81 4.68 71.98 0.34 4.15 16 21 C 0.03 1.55 5.34 29.85 0.16 1.71 16 22 C -0.55 -31.08 9.11 25.60 0.23 -30.85 16 23 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 24 C 0.00 0.01 5.46 84.65 0.46 0.47 16 25 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 26 Si 0.98 43.75 29.54 68.60 2.03 45.78 16 27 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 28 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 29 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 30 C -0.16 -4.94 9.64 22.36 0.22 -4.72 16 31 H 0.06 0.60 7.90 -2.39 -0.02 0.58 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.10 1.15 8.05 -2.39 -0.02 1.13 16 35 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.11 1.14 8.14 -2.39 -0.02 1.13 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.34 6.73 8.68 -89.69 -0.78 5.95 16 39 H 0.04 0.79 8.09 -2.39 -0.02 0.77 16 40 H 0.10 1.50 8.08 -2.39 -0.02 1.49 16 41 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 42 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 43 H 0.13 3.90 6.30 -2.91 -0.02 3.88 16 44 H 0.06 2.51 7.66 -2.39 -0.02 2.49 16 45 H 0.06 2.49 7.66 -2.39 -0.02 2.47 16 46 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 47 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 48 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 49 H 0.12 3.60 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -65.69 407.20 2.17 -63.52 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.13 Total: 23.31 kcal Atomic # 6 Polarization: -48.80 SS G_CDS: 4.00 Total: -44.79 kcal Atomic # 7 Polarization: -68.93 SS G_CDS: -3.05 Total: -71.98 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.94 Total: -15.83 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -65.69 2.17 -63.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922511531.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.856 kcal (2) G-P(sol) polarization free energy of solvation -65.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds