Wall clock time and date at job start Tue Mar 31 2020 10:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 108.32469 * 2 1 4 4 C 1.52523 * 108.52560 * 242.35595 * 2 1 3 5 5 C 1.50128 * 105.41474 * 149.35192 * 4 2 1 6 6 H 1.08996 * 109.20968 * 337.34323 * 5 4 2 7 7 C 1.53005 * 109.17265 * 218.00637 * 5 4 2 8 8 C 1.54835 * 110.81010 * 97.68907 * 5 4 2 9 9 C 1.54897 * 110.14274 * 321.12702 * 8 5 4 10 10 N 1.43429 * 116.08180 * 318.64438 * 9 8 5 11 11 C 1.34773 * 120.53964 * 271.59071 * 10 9 8 12 12 O 1.21286 * 120.00280 * 179.97438 * 11 10 9 13 13 C 1.50696 * 120.00123 * 359.97434 * 11 10 9 14 14 C 1.50701 * 109.47480 * 180.02562 * 13 11 10 15 15 C 1.37634 * 120.12855 * 264.72503 * 14 13 11 16 16 C 1.38613 * 120.24932 * 179.71690 * 15 14 13 17 17 C 1.38655 * 120.49778 * 0.56527 * 16 15 14 18 18 C 1.37591 * 120.25067 * 359.71554 * 17 16 15 19 19 C 1.40698 * 120.12806 * 85.00107 * 14 13 11 20 20 C 1.41398 * 120.24322 * 359.97438 * 19 14 13 21 21 H 1.08008 * 120.00107 * 334.08928 * 20 19 14 22 22 C 1.39943 * 120.00407 * 154.08652 * 20 19 14 23 23 N 1.30832 * 119.99787 * 343.62163 * 22 20 19 24 24 Si 1.86796 * 120.00595 * 163.61617 * 22 20 19 25 25 H 1.48509 * 109.46881 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47113 * 120.00297 * 24 22 20 27 27 H 1.48502 * 109.47482 * 240.00587 * 24 22 20 28 28 C 1.46241 * 108.52024 * 117.63880 * 2 1 3 29 29 H 1.08998 * 109.47479 * 302.36297 * 1 2 3 30 30 H 1.09002 * 109.47320 * 62.36288 * 1 2 3 31 31 H 1.09007 * 109.46945 * 182.35567 * 1 2 3 32 32 H 1.08999 * 110.25159 * 268.32956 * 4 2 1 33 33 H 1.09002 * 110.24577 * 30.38294 * 4 2 1 34 34 H 1.09001 * 109.46871 * 298.70035 * 7 5 4 35 35 H 1.08998 * 109.47092 * 58.70125 * 7 5 4 36 36 H 1.08994 * 109.46877 * 178.70384 * 7 5 4 37 37 H 1.09008 * 109.35883 * 200.92750 * 8 5 4 38 38 H 1.08999 * 109.25535 * 81.26501 * 8 5 4 39 39 H 1.08997 * 108.16699 * 196.92524 * 9 8 5 40 40 H 1.09009 * 108.00020 * 80.23633 * 9 8 5 41 41 H 1.09006 * 109.47191 * 300.00466 * 13 11 10 42 42 H 1.09003 * 109.46834 * 59.99986 * 13 11 10 43 43 H 1.08004 * 119.87350 * 359.97438 * 15 14 13 44 44 H 1.07999 * 119.75340 * 180.25585 * 16 15 14 45 45 H 1.08004 * 119.87442 * 179.74255 * 17 16 15 46 46 H 1.08005 * 120.13166 * 180.02562 * 18 17 16 47 47 H 0.96998 * 120.00230 * 179.97438 * 23 22 20 48 48 H 1.09006 * 109.84162 * 299.15475 * 28 2 1 49 49 H 1.09001 * 109.84396 * 60.07092 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8727 1.0348 0.0000 4 6 2.0146 -0.6710 -1.2811 5 6 3.3220 -0.0095 -1.6081 6 1 3.3577 0.9698 -1.1309 7 6 3.4314 0.1653 -3.1242 8 6 4.5117 -0.8643 -1.1067 9 6 4.1754 -1.4913 0.2692 10 7 3.4960 -0.6390 1.2015 11 6 4.1937 0.1532 2.0393 12 8 3.6092 0.8704 2.8235 13 6 5.7002 0.1478 2.0019 14 6 6.2317 1.1128 3.0302 15 6 6.5608 2.3986 2.6659 16 6 7.0444 3.2900 3.6108 17 6 7.2133 2.8951 4.9292 18 6 6.8962 1.6130 5.3148 19 6 6.3989 0.7011 4.3652 20 6 6.0691 -0.6189 4.7500 21 1 5.3316 -1.1760 4.1912 22 6 6.6982 -1.2036 5.8548 23 7 7.7973 -0.6804 6.3344 24 14 5.9689 -2.7310 6.6450 25 1 4.7334 -3.1217 5.9195 26 1 6.9534 -3.8408 6.5785 27 1 5.6403 -2.4452 8.0647 28 6 1.9945 -0.6433 1.2284 29 1 -0.3634 0.5501 0.8680 30 1 -0.3634 0.4767 -0.9104 31 1 -0.3633 -1.0269 0.0422 32 1 2.1628 -1.7381 -1.1154 33 1 1.2980 -0.5088 -2.0862 34 1 3.4076 -0.8126 -3.6053 35 1 2.5956 0.7666 -3.4819 36 1 4.3689 0.6661 -3.3655 37 1 5.3949 -0.2328 -1.0098 38 1 4.7123 -1.6581 -1.8262 39 1 5.1068 -1.8226 0.7283 40 1 3.5534 -2.3696 0.0962 41 1 6.0656 -0.8552 2.2224 42 1 6.0401 0.4486 1.0109 43 1 6.4379 2.7154 1.6407 44 1 7.2963 4.2983 3.3170 45 1 7.5947 3.5968 5.6563 46 1 7.0280 1.3076 6.3423 47 1 8.2332 -1.0854 7.1005 48 1 1.6384 -0.0864 2.0952 49 1 1.6270 -1.6686 1.2710 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928185984.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:32 Heat of formation + Delta-G solvation = -34.257537 kcal Electronic energy + Delta-G solvation = -27477.435220 eV Core-core repulsion = 23982.174555 eV Total energy + Delta-G solvation = -3495.260665 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.24524 -38.17765 -37.01506 -34.41396 -34.20681 -33.56854 -31.52566 -29.40292 -28.87548 -27.44038 -26.77353 -25.69388 -24.77139 -23.59970 -20.93813 -20.77187 -20.23556 -19.59823 -18.11460 -17.10214 -16.60728 -16.03619 -15.38827 -15.25937 -14.98192 -14.56019 -14.41715 -13.91211 -13.58613 -13.33016 -13.26361 -13.05814 -13.00946 -12.74563 -12.54806 -12.32508 -12.00081 -11.80557 -11.64843 -11.60498 -11.51342 -11.19280 -11.11562 -11.00096 -10.92721 -10.64401 -10.58430 -10.49153 -10.46207 -10.34591 -10.29199 -9.42718 -9.30479 -9.12154 -9.00239 -8.26782 -7.25908 -7.23160 -6.69029 -4.29009 2.81659 3.00335 3.10136 3.15727 3.30721 3.36272 3.47406 3.97629 4.54249 4.68182 4.70712 4.78833 4.98942 5.04957 5.08595 5.22388 5.39283 5.46668 5.51424 5.57999 5.61566 5.66279 5.73064 5.75901 5.79957 5.86829 5.88856 5.96131 6.01714 6.04161 6.13845 6.18174 6.21386 6.32638 6.33476 6.35211 6.38011 6.50271 6.56056 6.84318 6.88789 7.13793 7.34853 7.47635 7.69380 7.92320 8.00463 8.13364 8.18306 8.37027 8.70220 8.91103 8.97285 9.07048 10.25298 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013757 B = 0.004352 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.912364 B = 6431.563664 C = 7334.933857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 H 0.072 0.928 4 C -0.107 4.107 5 C -0.093 4.093 6 H 0.070 0.930 7 C -0.147 4.147 8 C -0.134 4.134 9 C 0.111 3.889 10 N -0.620 5.620 11 C 0.520 3.480 12 O -0.522 6.522 13 C -0.068 4.068 14 C -0.180 4.180 15 C -0.082 4.082 16 C -0.239 4.239 17 C -0.108 4.108 18 C -0.159 4.159 19 C 0.129 3.871 20 C -0.456 4.456 21 H 0.074 0.926 22 C 0.077 3.923 23 N -0.796 5.796 24 Si 0.902 3.098 25 H -0.262 1.262 26 H -0.275 1.275 27 H -0.272 1.272 28 C 0.122 3.878 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.116 0.884 47 H 0.278 0.722 48 H 0.092 0.908 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.549 -4.066 -14.488 17.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 H 0.091 0.909 4 C -0.144 4.144 5 C -0.111 4.111 6 H 0.089 0.911 7 C -0.204 4.204 8 C -0.173 4.173 9 C -0.015 4.015 10 N -0.355 5.355 11 C 0.309 3.691 12 O -0.396 6.396 13 C -0.107 4.107 14 C -0.182 4.182 15 C -0.100 4.100 16 C -0.259 4.259 17 C -0.126 4.126 18 C -0.178 4.178 19 C 0.127 3.873 20 C -0.485 4.485 21 H 0.092 0.908 22 C -0.140 4.140 23 N -0.422 5.422 24 Si 0.726 3.274 25 H -0.185 1.185 26 H -0.201 1.201 27 H -0.197 1.197 28 C 0.001 3.999 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.134 0.866 47 H 0.089 0.911 48 H 0.111 0.889 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.665 -3.713 -13.839 16.745 hybrid contribution -0.191 -0.681 0.317 0.775 sum -8.855 -4.394 -13.522 16.750 Atomic orbital electron populations 1.21933 0.95166 1.01698 1.01816 1.20488 0.95885 1.01212 0.95511 0.90933 1.21224 0.96537 1.00051 0.96602 1.21164 0.94773 0.99663 0.95512 0.91150 1.21942 1.01421 1.01288 0.95772 1.22790 0.98138 0.99809 0.96547 1.21028 0.98195 0.92543 0.89698 1.48160 1.05958 1.44467 1.36957 1.21228 0.90659 0.78267 0.78917 1.90659 1.71461 1.39832 1.37598 1.20291 0.90001 1.01718 0.98715 1.19090 1.11049 0.94316 0.93698 1.20285 0.99491 0.93469 0.96757 1.20294 1.12995 0.98190 0.94373 1.20666 1.00710 0.96176 0.95060 1.21282 1.04809 0.92011 0.99741 1.17335 0.87959 0.92633 0.89420 1.19497 1.20087 0.98484 1.10479 0.90814 1.25869 0.93505 0.98661 0.95970 1.69834 1.13373 1.38381 1.20596 0.86366 0.80157 0.81117 0.79714 1.18538 1.20059 1.19735 1.20890 0.79733 1.00814 0.98445 0.92612 0.92683 0.92722 0.91336 0.91530 0.92879 0.92996 0.92939 0.91626 0.90970 0.90742 0.91607 0.88751 0.90828 0.89900 0.89736 0.89634 0.86583 0.91083 0.88949 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.91 37.16 0.33 -1.06 16 2 C -0.11 -1.25 2.21 -94.07 -0.21 -1.46 16 3 H 0.07 0.97 6.93 -51.93 -0.36 0.61 16 4 C -0.11 -1.01 4.72 -28.40 -0.13 -1.14 16 5 C -0.09 -0.94 2.49 -91.08 -0.23 -1.17 16 6 H 0.07 0.88 6.83 -51.93 -0.35 0.52 16 7 C -0.15 -1.26 8.84 37.16 0.33 -0.93 16 8 C -0.13 -1.38 5.81 -24.76 -0.14 -1.52 16 9 C 0.11 1.33 4.70 -4.67 -0.02 1.31 16 10 N -0.62 -9.53 2.57 -175.53 -0.45 -9.98 16 11 C 0.52 10.45 7.33 -10.99 -0.08 10.37 16 12 O -0.52 -12.77 15.51 5.55 0.09 -12.69 16 13 C -0.07 -1.37 3.78 -29.04 -0.11 -1.48 16 14 C -0.18 -4.42 4.43 -103.91 -0.46 -4.88 16 15 C -0.08 -1.93 9.66 -39.66 -0.38 -2.32 16 16 C -0.24 -5.70 10.05 -39.29 -0.39 -6.09 16 17 C -0.11 -2.68 10.02 -39.66 -0.40 -3.08 16 18 C -0.16 -4.33 8.68 -38.88 -0.34 -4.67 16 19 C 0.13 3.51 5.56 -106.83 -0.59 2.91 16 20 C -0.46 -12.19 8.14 -37.74 -0.31 -12.50 16 21 H 0.07 1.94 6.67 -52.48 -0.35 1.59 16 22 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 23 N -0.80 -20.80 10.97 55.55 0.61 -20.19 16 24 Si 0.90 19.12 29.59 -169.99 -5.03 14.10 16 25 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 27 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 28 C 0.12 1.65 5.15 -5.20 -0.03 1.62 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.46 7.98 -51.93 -0.41 0.05 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.62 6.28 -51.93 -0.33 0.30 16 33 H 0.07 0.57 7.27 -51.93 -0.38 0.19 16 34 H 0.05 0.41 8.13 -51.93 -0.42 -0.01 16 35 H 0.05 0.42 8.08 -51.93 -0.42 0.01 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.73 7.49 -51.92 -0.39 0.34 16 38 H 0.07 0.61 7.97 -51.93 -0.41 0.20 16 39 H 0.07 0.93 6.47 -51.93 -0.34 0.59 16 40 H 0.07 0.68 6.88 -51.92 -0.36 0.32 16 41 H 0.09 1.89 6.31 -51.93 -0.33 1.57 16 42 H 0.07 1.28 7.38 -51.93 -0.38 0.90 16 43 H 0.08 1.74 8.06 -52.48 -0.42 1.31 16 44 H 0.08 1.79 8.06 -52.49 -0.42 1.36 16 45 H 0.09 1.91 8.06 -52.48 -0.42 1.48 16 46 H 0.12 3.24 6.22 -52.48 -0.33 2.91 16 47 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 48 H 0.09 1.46 7.13 -51.93 -0.37 1.09 16 49 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 LS Contribution 374.63 15.07 5.65 5.65 Total: -1.00 -30.51 374.63 -10.42 -40.92 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -8.02 Total: 6.41 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -3.26 Total: -24.21 kcal Atomic # 7 Polarization: -30.33 SS G_CDS: 0.16 Total: -30.17 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.09 Total: -12.69 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.51 -10.42 -40.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928185984.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.665 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds