Wall clock time and date at job start Tue Mar 31 2020 10:54:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09003 * 108.32469 * 2 1
4 4 C 1.52523 * 108.52560 * 242.35595 * 2 1 3
5 5 C 1.50128 * 105.41474 * 149.35192 * 4 2 1
6 6 H 1.08996 * 109.20968 * 337.34323 * 5 4 2
7 7 C 1.53005 * 109.17265 * 218.00637 * 5 4 2
8 8 C 1.54835 * 110.81010 * 97.68907 * 5 4 2
9 9 C 1.54897 * 110.14274 * 321.12702 * 8 5 4
10 10 N 1.43429 * 116.08180 * 318.64438 * 9 8 5
11 11 C 1.34773 * 120.53964 * 271.59071 * 10 9 8
12 12 O 1.21286 * 120.00280 * 179.97438 * 11 10 9
13 13 C 1.50696 * 120.00123 * 359.97434 * 11 10 9
14 14 C 1.50701 * 109.47480 * 180.02562 * 13 11 10
15 15 C 1.37634 * 120.12855 * 264.72503 * 14 13 11
16 16 C 1.38613 * 120.24932 * 179.71690 * 15 14 13
17 17 C 1.38655 * 120.49778 * 0.56527 * 16 15 14
18 18 C 1.37591 * 120.25067 * 359.71554 * 17 16 15
19 19 C 1.40698 * 120.12806 * 85.00107 * 14 13 11
20 20 C 1.41398 * 120.24322 * 359.97438 * 19 14 13
21 21 H 1.08008 * 120.00107 * 334.08928 * 20 19 14
22 22 C 1.39943 * 120.00407 * 154.08652 * 20 19 14
23 23 N 1.30832 * 119.99787 * 343.62163 * 22 20 19
24 24 Si 1.86796 * 120.00595 * 163.61617 * 22 20 19
25 25 H 1.48509 * 109.46881 * 0.02562 * 24 22 20
26 26 H 1.48499 * 109.47113 * 120.00297 * 24 22 20
27 27 H 1.48502 * 109.47482 * 240.00587 * 24 22 20
28 28 C 1.46241 * 108.52024 * 117.63880 * 2 1 3
29 29 H 1.08998 * 109.47479 * 302.36297 * 1 2 3
30 30 H 1.09002 * 109.47320 * 62.36288 * 1 2 3
31 31 H 1.09007 * 109.46945 * 182.35567 * 1 2 3
32 32 H 1.08999 * 110.25159 * 268.32956 * 4 2 1
33 33 H 1.09002 * 110.24577 * 30.38294 * 4 2 1
34 34 H 1.09001 * 109.46871 * 298.70035 * 7 5 4
35 35 H 1.08998 * 109.47092 * 58.70125 * 7 5 4
36 36 H 1.08994 * 109.46877 * 178.70384 * 7 5 4
37 37 H 1.09008 * 109.35883 * 200.92750 * 8 5 4
38 38 H 1.08999 * 109.25535 * 81.26501 * 8 5 4
39 39 H 1.08997 * 108.16699 * 196.92524 * 9 8 5
40 40 H 1.09009 * 108.00020 * 80.23633 * 9 8 5
41 41 H 1.09006 * 109.47191 * 300.00466 * 13 11 10
42 42 H 1.09003 * 109.46834 * 59.99986 * 13 11 10
43 43 H 1.08004 * 119.87350 * 359.97438 * 15 14 13
44 44 H 1.07999 * 119.75340 * 180.25585 * 16 15 14
45 45 H 1.08004 * 119.87442 * 179.74255 * 17 16 15
46 46 H 1.08005 * 120.13166 * 180.02562 * 18 17 16
47 47 H 0.96998 * 120.00230 * 179.97438 * 23 22 20
48 48 H 1.09006 * 109.84162 * 299.15475 * 28 2 1
49 49 H 1.09001 * 109.84396 * 60.07092 * 28 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8727 1.0348 0.0000
4 6 2.0146 -0.6710 -1.2811
5 6 3.3220 -0.0095 -1.6081
6 1 3.3577 0.9698 -1.1309
7 6 3.4314 0.1653 -3.1242
8 6 4.5117 -0.8643 -1.1067
9 6 4.1754 -1.4913 0.2692
10 7 3.4960 -0.6390 1.2015
11 6 4.1937 0.1532 2.0393
12 8 3.6092 0.8704 2.8235
13 6 5.7002 0.1478 2.0019
14 6 6.2317 1.1128 3.0302
15 6 6.5608 2.3986 2.6659
16 6 7.0444 3.2900 3.6108
17 6 7.2133 2.8951 4.9292
18 6 6.8962 1.6130 5.3148
19 6 6.3989 0.7011 4.3652
20 6 6.0691 -0.6189 4.7500
21 1 5.3316 -1.1760 4.1912
22 6 6.6982 -1.2036 5.8548
23 7 7.7973 -0.6804 6.3344
24 14 5.9689 -2.7310 6.6450
25 1 4.7334 -3.1217 5.9195
26 1 6.9534 -3.8408 6.5785
27 1 5.6403 -2.4452 8.0647
28 6 1.9945 -0.6433 1.2284
29 1 -0.3634 0.5501 0.8680
30 1 -0.3634 0.4767 -0.9104
31 1 -0.3633 -1.0269 0.0422
32 1 2.1628 -1.7381 -1.1154
33 1 1.2980 -0.5088 -2.0862
34 1 3.4076 -0.8126 -3.6053
35 1 2.5956 0.7666 -3.4819
36 1 4.3689 0.6661 -3.3655
37 1 5.3949 -0.2328 -1.0098
38 1 4.7123 -1.6581 -1.8262
39 1 5.1068 -1.8226 0.7283
40 1 3.5534 -2.3696 0.0962
41 1 6.0656 -0.8552 2.2224
42 1 6.0401 0.4486 1.0109
43 1 6.4379 2.7154 1.6407
44 1 7.2963 4.2983 3.3170
45 1 7.5947 3.5968 5.6563
46 1 7.0280 1.3076 6.3423
47 1 8.2332 -1.0854 7.1005
48 1 1.6384 -0.0864 2.0952
49 1 1.6270 -1.6686 1.2710
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000928185984.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:54:31
Heat of formation + Delta-G solvation = -48.828666 kcal
Electronic energy + Delta-G solvation = -27478.067071 eV
Core-core repulsion = 23982.174555 eV
Total energy + Delta-G solvation = -3495.892517 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-41.48150 -39.70882 -38.65640 -35.50818 -35.49878 -35.24495 -33.28642 -31.35554
-29.79723 -29.01275 -27.53733 -27.24505 -26.38782 -24.62938 -22.83720 -22.15677
-21.24440 -20.97425 -19.46071 -19.02574 -17.96581 -17.41166 -17.06136 -16.45427
-16.20302 -16.07721 -15.62862 -15.42497 -15.33277 -14.59493 -14.50188 -14.36995
-14.12544 -13.95406 -13.68636 -13.43763 -13.39324 -13.31269 -12.92707 -12.82504
-12.76534 -12.68631 -12.57601 -12.48357 -12.43789 -12.13947 -12.10305 -11.52165
-11.39925 -11.32265 -11.30215 -11.18429 -11.11181 -11.03483 -10.59165 -9.52940
-9.23971 -9.16454 -8.60085 -6.29878 0.98187 1.11839 1.35002 1.48534
1.51448 1.83000 2.15084 2.19762 2.77364 3.61542 3.74324 3.84804
3.96608 4.02873 4.13403 4.22155 4.24749 4.31042 4.37619 4.46079
4.56127 4.61212 4.68349 4.70508 4.74958 4.75646 4.79315 4.87250
4.88986 4.95683 4.99189 5.03255 5.09298 5.15778 5.19584 5.22708
5.28557 5.35601 5.41855 5.47787 5.53113 5.54096 5.55152 5.75272
5.76349 6.02895 6.15626 6.20067 6.41402 6.59595 6.73317 6.98935
7.10274 7.40490 8.36818
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.013757 B = 0.004352 C = 0.003816
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2034.912364 B = 6431.563664 C = 7334.933857
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.107 4.107
3 H 0.043 0.957
4 C -0.099 4.099
5 C -0.093 4.093
6 H 0.040 0.960
7 C -0.142 4.142
8 C -0.128 4.128
9 C 0.099 3.901
10 N -0.610 5.610
11 C 0.518 3.482
12 O -0.579 6.579
13 C -0.062 4.062
14 C -0.188 4.188
15 C -0.093 4.093
16 C -0.242 4.242
17 C -0.117 4.117
18 C -0.193 4.193
19 C 0.097 3.903
20 C -0.482 4.482
21 H 0.068 0.932
22 C 0.037 3.963
23 N -0.826 5.826
24 Si 0.972 3.028
25 H -0.263 1.263
26 H -0.259 1.259
27 H -0.269 1.269
28 C 0.121 3.879
29 H 0.042 0.958
30 H 0.068 0.932
31 H 0.071 0.929
32 H 0.082 0.918
33 H 0.083 0.917
34 H 0.069 0.931
35 H 0.054 0.946
36 H 0.048 0.952
37 H 0.055 0.945
38 H 0.100 0.900
39 H 0.069 0.931
40 H 0.094 0.906
41 H 0.093 0.907
42 H 0.102 0.898
43 H 0.111 0.889
44 H 0.115 0.885
45 H 0.106 0.894
46 H 0.097 0.903
47 H 0.286 0.714
48 H 0.060 0.940
49 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.428 -5.824 -17.063 20.346
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.126 4.126
3 H 0.062 0.938
4 C -0.136 4.136
5 C -0.111 4.111
6 H 0.058 0.942
7 C -0.199 4.199
8 C -0.167 4.167
9 C -0.025 4.025
10 N -0.343 5.343
11 C 0.308 3.692
12 O -0.458 6.458
13 C -0.101 4.101
14 C -0.190 4.190
15 C -0.111 4.111
16 C -0.261 4.261
17 C -0.135 4.135
18 C -0.212 4.212
19 C 0.095 3.905
20 C -0.512 4.512
21 H 0.086 0.914
22 C -0.178 4.178
23 N -0.452 5.452
24 Si 0.793 3.207
25 H -0.187 1.187
26 H -0.183 1.183
27 H -0.194 1.194
28 C 0.000 4.000
29 H 0.061 0.939
30 H 0.087 0.913
31 H 0.090 0.910
32 H 0.100 0.900
33 H 0.102 0.898
34 H 0.088 0.912
35 H 0.073 0.927
36 H 0.067 0.933
37 H 0.073 0.927
38 H 0.119 0.881
39 H 0.088 0.912
40 H 0.112 0.888
41 H 0.111 0.889
42 H 0.120 0.880
43 H 0.129 0.871
44 H 0.133 0.867
45 H 0.124 0.876
46 H 0.115 0.885
47 H 0.097 0.903
48 H 0.079 0.921
49 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -9.539 -5.495 -16.469 19.809
hybrid contribution 0.086 -0.068 1.036 1.042
sum -9.453 -5.563 -15.433 18.934
Atomic orbital electron populations
1.21895 0.93481 1.02772 1.01976 1.20391 0.97248 0.99470 0.95473
0.93835 1.21211 0.96304 1.00372 0.95695 1.21130 0.95230 0.98193
0.96592 0.94159 1.21895 1.01461 1.02273 0.94302 1.22770 0.97711
1.00426 0.95766 1.21356 0.98342 0.92942 0.89897 1.48154 1.06956
1.43051 1.36129 1.21118 0.90597 0.78419 0.79062 1.90632 1.72285
1.42596 1.40255 1.20241 0.90433 1.00626 0.98831 1.19576 1.09903
0.95649 0.93865 1.20697 0.98901 0.93217 0.98302 1.20697 1.11889
0.99643 0.93850 1.20944 1.00462 0.95773 0.96355 1.21296 1.07273
0.93447 0.99193 1.17723 0.88872 0.93214 0.90730 1.19613 1.20781
0.98781 1.11990 0.91394 1.26664 0.93469 1.01713 0.95907 1.69887
1.14293 1.39937 1.21114 0.85312 0.79352 0.77550 0.78437 1.18733
1.18292 1.19369 1.21056 0.78325 1.02099 0.98491 0.93851 0.91334
0.91006 0.89955 0.89808 0.91232 0.92651 0.93263 0.92660 0.88122
0.91226 0.88809 0.88880 0.88038 0.87060 0.86706 0.87567 0.88459
0.90332 0.92137 0.88922
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.43 8.91 71.98 0.64 -1.78 16
2 C -0.11 -2.26 2.21 -13.03 -0.03 -2.29 16
3 H 0.04 1.18 6.93 -2.39 -0.02 1.17 16
4 C -0.10 -1.56 4.72 29.51 0.14 -1.42 16
5 C -0.09 -1.68 2.49 -11.09 -0.03 -1.71 16
6 H 0.04 0.98 6.83 -2.39 -0.02 0.96 16
7 C -0.14 -2.01 8.84 71.98 0.64 -1.37 16
8 C -0.13 -2.28 5.81 31.87 0.19 -2.10 16
9 C 0.10 2.15 4.70 87.60 0.41 2.57 16
10 N -0.61 -18.45 2.57 -827.64 -2.12 -20.57 16
11 C 0.52 21.30 7.33 87.66 0.64 21.94 16
12 O -0.58 -29.70 15.51 -3.05 -0.05 -29.75 16
13 C -0.06 -2.53 3.78 29.10 0.11 -2.42 16
14 C -0.19 -9.47 4.43 -19.41 -0.09 -9.56 16
15 C -0.09 -4.40 9.66 22.22 0.21 -4.18 16
16 C -0.24 -11.42 10.05 22.46 0.23 -11.19 16
17 C -0.12 -5.94 10.02 22.22 0.22 -5.72 16
18 C -0.19 -10.95 8.68 22.73 0.20 -10.76 16
19 C 0.10 5.48 5.56 -21.29 -0.12 5.37 16
20 C -0.48 -26.78 8.14 23.46 0.19 -26.59 16
21 H 0.07 3.72 6.67 -2.91 -0.02 3.70 16
22 C 0.04 1.92 5.16 85.26 0.44 2.36 16
23 N -0.83 -44.50 10.97 21.83 0.24 -44.26 16
24 Si 0.97 39.82 29.59 68.60 2.03 41.85 16
25 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16
26 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16
27 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16
28 C 0.12 3.19 5.15 83.58 0.43 3.62 16
29 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16
30 H 0.07 0.99 7.98 -2.39 -0.02 0.97 16
31 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16
32 H 0.08 1.11 6.28 -2.39 -0.01 1.10 16
33 H 0.08 1.08 7.27 -2.39 -0.02 1.07 16
34 H 0.07 0.77 8.13 -2.39 -0.02 0.75 16
35 H 0.05 0.75 8.08 -2.39 -0.02 0.73 16
36 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16
37 H 0.05 1.11 7.49 -2.38 -0.02 1.09 16
38 H 0.10 1.28 7.97 -2.39 -0.02 1.26 16
39 H 0.07 1.62 6.47 -2.39 -0.02 1.61 16
40 H 0.09 1.57 6.88 -2.38 -0.02 1.55 16
41 H 0.09 3.80 6.31 -2.38 -0.02 3.78 16
42 H 0.10 3.46 7.38 -2.39 -0.02 3.44 16
43 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16
44 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16
45 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16
46 H 0.10 5.76 6.22 -2.91 -0.02 5.74 16
47 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16
48 H 0.06 2.00 7.13 -2.38 -0.02 1.98 16
49 H 0.09 1.95 8.13 -2.39 -0.02 1.93 16
Total: -1.00 -70.28 374.63 5.45 -64.83
By element:
Atomic # 1 Polarization: 32.20 SS G_CDS: 0.93 Total: 33.13 kcal
Atomic # 6 Polarization: -49.66 SS G_CDS: 4.43 Total: -45.23 kcal
Atomic # 7 Polarization: -62.95 SS G_CDS: -1.88 Total: -64.83 kcal
Atomic # 8 Polarization: -29.70 SS G_CDS: -0.05 Total: -29.75 kcal
Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal
Total: -70.28 5.45 -64.83 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000928185984.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.000 kcal
(2) G-P(sol) polarization free energy of solvation -70.280 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.279 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.451 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.829 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.829 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds