Wall clock time and date at job start Tue Mar 31 2020 10:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 108.32469 * 2 1 4 4 C 1.52523 * 108.52560 * 242.35595 * 2 1 3 5 5 C 1.50128 * 105.41474 * 149.35192 * 4 2 1 6 6 H 1.08996 * 109.20968 * 337.34323 * 5 4 2 7 7 C 1.53005 * 109.17265 * 218.00637 * 5 4 2 8 8 C 1.54835 * 110.81010 * 97.68907 * 5 4 2 9 9 C 1.54897 * 110.14274 * 321.12702 * 8 5 4 10 10 N 1.43429 * 116.08180 * 318.64438 * 9 8 5 11 11 C 1.34773 * 120.53964 * 271.59071 * 10 9 8 12 12 O 1.21286 * 120.00280 * 179.97438 * 11 10 9 13 13 C 1.50696 * 120.00123 * 359.97434 * 11 10 9 14 14 C 1.50701 * 109.47480 * 180.02562 * 13 11 10 15 15 C 1.37634 * 120.12855 * 264.72503 * 14 13 11 16 16 C 1.38613 * 120.24932 * 179.71690 * 15 14 13 17 17 C 1.38655 * 120.49778 * 0.56527 * 16 15 14 18 18 C 1.37591 * 120.25067 * 359.71554 * 17 16 15 19 19 C 1.40698 * 120.12806 * 85.00107 * 14 13 11 20 20 C 1.41398 * 120.24322 * 359.97438 * 19 14 13 21 21 H 1.08008 * 120.00107 * 334.08928 * 20 19 14 22 22 C 1.39943 * 120.00407 * 154.08652 * 20 19 14 23 23 N 1.30832 * 119.99787 * 343.62163 * 22 20 19 24 24 Si 1.86796 * 120.00595 * 163.61617 * 22 20 19 25 25 H 1.48509 * 109.46881 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47113 * 120.00297 * 24 22 20 27 27 H 1.48502 * 109.47482 * 240.00587 * 24 22 20 28 28 C 1.46241 * 108.52024 * 117.63880 * 2 1 3 29 29 H 1.08998 * 109.47479 * 302.36297 * 1 2 3 30 30 H 1.09002 * 109.47320 * 62.36288 * 1 2 3 31 31 H 1.09007 * 109.46945 * 182.35567 * 1 2 3 32 32 H 1.08999 * 110.25159 * 268.32956 * 4 2 1 33 33 H 1.09002 * 110.24577 * 30.38294 * 4 2 1 34 34 H 1.09001 * 109.46871 * 298.70035 * 7 5 4 35 35 H 1.08998 * 109.47092 * 58.70125 * 7 5 4 36 36 H 1.08994 * 109.46877 * 178.70384 * 7 5 4 37 37 H 1.09008 * 109.35883 * 200.92750 * 8 5 4 38 38 H 1.08999 * 109.25535 * 81.26501 * 8 5 4 39 39 H 1.08997 * 108.16699 * 196.92524 * 9 8 5 40 40 H 1.09009 * 108.00020 * 80.23633 * 9 8 5 41 41 H 1.09006 * 109.47191 * 300.00466 * 13 11 10 42 42 H 1.09003 * 109.46834 * 59.99986 * 13 11 10 43 43 H 1.08004 * 119.87350 * 359.97438 * 15 14 13 44 44 H 1.07999 * 119.75340 * 180.25585 * 16 15 14 45 45 H 1.08004 * 119.87442 * 179.74255 * 17 16 15 46 46 H 1.08005 * 120.13166 * 180.02562 * 18 17 16 47 47 H 0.96998 * 120.00230 * 179.97438 * 23 22 20 48 48 H 1.09006 * 109.84162 * 299.15475 * 28 2 1 49 49 H 1.09001 * 109.84396 * 60.07092 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8727 1.0348 0.0000 4 6 2.0146 -0.6710 -1.2811 5 6 3.3220 -0.0095 -1.6081 6 1 3.3577 0.9698 -1.1309 7 6 3.4314 0.1653 -3.1242 8 6 4.5117 -0.8643 -1.1067 9 6 4.1754 -1.4913 0.2692 10 7 3.4960 -0.6390 1.2015 11 6 4.1937 0.1532 2.0393 12 8 3.6092 0.8704 2.8235 13 6 5.7002 0.1478 2.0019 14 6 6.2317 1.1128 3.0302 15 6 6.5608 2.3986 2.6659 16 6 7.0444 3.2900 3.6108 17 6 7.2133 2.8951 4.9292 18 6 6.8962 1.6130 5.3148 19 6 6.3989 0.7011 4.3652 20 6 6.0691 -0.6189 4.7500 21 1 5.3316 -1.1760 4.1912 22 6 6.6982 -1.2036 5.8548 23 7 7.7973 -0.6804 6.3344 24 14 5.9689 -2.7310 6.6450 25 1 4.7334 -3.1217 5.9195 26 1 6.9534 -3.8408 6.5785 27 1 5.6403 -2.4452 8.0647 28 6 1.9945 -0.6433 1.2284 29 1 -0.3634 0.5501 0.8680 30 1 -0.3634 0.4767 -0.9104 31 1 -0.3633 -1.0269 0.0422 32 1 2.1628 -1.7381 -1.1154 33 1 1.2980 -0.5088 -2.0862 34 1 3.4076 -0.8126 -3.6053 35 1 2.5956 0.7666 -3.4819 36 1 4.3689 0.6661 -3.3655 37 1 5.3949 -0.2328 -1.0098 38 1 4.7123 -1.6581 -1.8262 39 1 5.1068 -1.8226 0.7283 40 1 3.5534 -2.3696 0.0962 41 1 6.0656 -0.8552 2.2224 42 1 6.0401 0.4486 1.0109 43 1 6.4379 2.7154 1.6407 44 1 7.2963 4.2983 3.3170 45 1 7.5947 3.5968 5.6563 46 1 7.0280 1.3076 6.3423 47 1 8.2332 -1.0854 7.1005 48 1 1.6384 -0.0864 2.0952 49 1 1.6270 -1.6686 1.2710 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928185984.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:31 Heat of formation + Delta-G solvation = -48.828666 kcal Electronic energy + Delta-G solvation = -27478.067071 eV Core-core repulsion = 23982.174555 eV Total energy + Delta-G solvation = -3495.892517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.48150 -39.70882 -38.65640 -35.50818 -35.49878 -35.24495 -33.28642 -31.35554 -29.79723 -29.01275 -27.53733 -27.24505 -26.38782 -24.62938 -22.83720 -22.15677 -21.24440 -20.97425 -19.46071 -19.02574 -17.96581 -17.41166 -17.06136 -16.45427 -16.20302 -16.07721 -15.62862 -15.42497 -15.33277 -14.59493 -14.50188 -14.36995 -14.12544 -13.95406 -13.68636 -13.43763 -13.39324 -13.31269 -12.92707 -12.82504 -12.76534 -12.68631 -12.57601 -12.48357 -12.43789 -12.13947 -12.10305 -11.52165 -11.39925 -11.32265 -11.30215 -11.18429 -11.11181 -11.03483 -10.59165 -9.52940 -9.23971 -9.16454 -8.60085 -6.29878 0.98187 1.11839 1.35002 1.48534 1.51448 1.83000 2.15084 2.19762 2.77364 3.61542 3.74324 3.84804 3.96608 4.02873 4.13403 4.22155 4.24749 4.31042 4.37619 4.46079 4.56127 4.61212 4.68349 4.70508 4.74958 4.75646 4.79315 4.87250 4.88986 4.95683 4.99189 5.03255 5.09298 5.15778 5.19584 5.22708 5.28557 5.35601 5.41855 5.47787 5.53113 5.54096 5.55152 5.75272 5.76349 6.02895 6.15626 6.20067 6.41402 6.59595 6.73317 6.98935 7.10274 7.40490 8.36818 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013757 B = 0.004352 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.912364 B = 6431.563664 C = 7334.933857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 H 0.043 0.957 4 C -0.099 4.099 5 C -0.093 4.093 6 H 0.040 0.960 7 C -0.142 4.142 8 C -0.128 4.128 9 C 0.099 3.901 10 N -0.610 5.610 11 C 0.518 3.482 12 O -0.579 6.579 13 C -0.062 4.062 14 C -0.188 4.188 15 C -0.093 4.093 16 C -0.242 4.242 17 C -0.117 4.117 18 C -0.193 4.193 19 C 0.097 3.903 20 C -0.482 4.482 21 H 0.068 0.932 22 C 0.037 3.963 23 N -0.826 5.826 24 Si 0.972 3.028 25 H -0.263 1.263 26 H -0.259 1.259 27 H -0.269 1.269 28 C 0.121 3.879 29 H 0.042 0.958 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.111 0.889 44 H 0.115 0.885 45 H 0.106 0.894 46 H 0.097 0.903 47 H 0.286 0.714 48 H 0.060 0.940 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.428 -5.824 -17.063 20.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.126 4.126 3 H 0.062 0.938 4 C -0.136 4.136 5 C -0.111 4.111 6 H 0.058 0.942 7 C -0.199 4.199 8 C -0.167 4.167 9 C -0.025 4.025 10 N -0.343 5.343 11 C 0.308 3.692 12 O -0.458 6.458 13 C -0.101 4.101 14 C -0.190 4.190 15 C -0.111 4.111 16 C -0.261 4.261 17 C -0.135 4.135 18 C -0.212 4.212 19 C 0.095 3.905 20 C -0.512 4.512 21 H 0.086 0.914 22 C -0.178 4.178 23 N -0.452 5.452 24 Si 0.793 3.207 25 H -0.187 1.187 26 H -0.183 1.183 27 H -0.194 1.194 28 C 0.000 4.000 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.119 0.881 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.120 0.880 43 H 0.129 0.871 44 H 0.133 0.867 45 H 0.124 0.876 46 H 0.115 0.885 47 H 0.097 0.903 48 H 0.079 0.921 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.539 -5.495 -16.469 19.809 hybrid contribution 0.086 -0.068 1.036 1.042 sum -9.453 -5.563 -15.433 18.934 Atomic orbital electron populations 1.21895 0.93481 1.02772 1.01976 1.20391 0.97248 0.99470 0.95473 0.93835 1.21211 0.96304 1.00372 0.95695 1.21130 0.95230 0.98193 0.96592 0.94159 1.21895 1.01461 1.02273 0.94302 1.22770 0.97711 1.00426 0.95766 1.21356 0.98342 0.92942 0.89897 1.48154 1.06956 1.43051 1.36129 1.21118 0.90597 0.78419 0.79062 1.90632 1.72285 1.42596 1.40255 1.20241 0.90433 1.00626 0.98831 1.19576 1.09903 0.95649 0.93865 1.20697 0.98901 0.93217 0.98302 1.20697 1.11889 0.99643 0.93850 1.20944 1.00462 0.95773 0.96355 1.21296 1.07273 0.93447 0.99193 1.17723 0.88872 0.93214 0.90730 1.19613 1.20781 0.98781 1.11990 0.91394 1.26664 0.93469 1.01713 0.95907 1.69887 1.14293 1.39937 1.21114 0.85312 0.79352 0.77550 0.78437 1.18733 1.18292 1.19369 1.21056 0.78325 1.02099 0.98491 0.93851 0.91334 0.91006 0.89955 0.89808 0.91232 0.92651 0.93263 0.92660 0.88122 0.91226 0.88809 0.88880 0.88038 0.87060 0.86706 0.87567 0.88459 0.90332 0.92137 0.88922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.91 71.98 0.64 -1.78 16 2 C -0.11 -2.26 2.21 -13.03 -0.03 -2.29 16 3 H 0.04 1.18 6.93 -2.39 -0.02 1.17 16 4 C -0.10 -1.56 4.72 29.51 0.14 -1.42 16 5 C -0.09 -1.68 2.49 -11.09 -0.03 -1.71 16 6 H 0.04 0.98 6.83 -2.39 -0.02 0.96 16 7 C -0.14 -2.01 8.84 71.98 0.64 -1.37 16 8 C -0.13 -2.28 5.81 31.87 0.19 -2.10 16 9 C 0.10 2.15 4.70 87.60 0.41 2.57 16 10 N -0.61 -18.45 2.57 -827.64 -2.12 -20.57 16 11 C 0.52 21.30 7.33 87.66 0.64 21.94 16 12 O -0.58 -29.70 15.51 -3.05 -0.05 -29.75 16 13 C -0.06 -2.53 3.78 29.10 0.11 -2.42 16 14 C -0.19 -9.47 4.43 -19.41 -0.09 -9.56 16 15 C -0.09 -4.40 9.66 22.22 0.21 -4.18 16 16 C -0.24 -11.42 10.05 22.46 0.23 -11.19 16 17 C -0.12 -5.94 10.02 22.22 0.22 -5.72 16 18 C -0.19 -10.95 8.68 22.73 0.20 -10.76 16 19 C 0.10 5.48 5.56 -21.29 -0.12 5.37 16 20 C -0.48 -26.78 8.14 23.46 0.19 -26.59 16 21 H 0.07 3.72 6.67 -2.91 -0.02 3.70 16 22 C 0.04 1.92 5.16 85.26 0.44 2.36 16 23 N -0.83 -44.50 10.97 21.83 0.24 -44.26 16 24 Si 0.97 39.82 29.59 68.60 2.03 41.85 16 25 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 26 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 27 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 28 C 0.12 3.19 5.15 83.58 0.43 3.62 16 29 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.99 7.98 -2.39 -0.02 0.97 16 31 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.08 1.11 6.28 -2.39 -0.01 1.10 16 33 H 0.08 1.08 7.27 -2.39 -0.02 1.07 16 34 H 0.07 0.77 8.13 -2.39 -0.02 0.75 16 35 H 0.05 0.75 8.08 -2.39 -0.02 0.73 16 36 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.05 1.11 7.49 -2.38 -0.02 1.09 16 38 H 0.10 1.28 7.97 -2.39 -0.02 1.26 16 39 H 0.07 1.62 6.47 -2.39 -0.02 1.61 16 40 H 0.09 1.57 6.88 -2.38 -0.02 1.55 16 41 H 0.09 3.80 6.31 -2.38 -0.02 3.78 16 42 H 0.10 3.46 7.38 -2.39 -0.02 3.44 16 43 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 44 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 45 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 46 H 0.10 5.76 6.22 -2.91 -0.02 5.74 16 47 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 48 H 0.06 2.00 7.13 -2.38 -0.02 1.98 16 49 H 0.09 1.95 8.13 -2.39 -0.02 1.93 16 Total: -1.00 -70.28 374.63 5.45 -64.83 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: 0.93 Total: 33.13 kcal Atomic # 6 Polarization: -49.66 SS G_CDS: 4.43 Total: -45.23 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: -1.88 Total: -64.83 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.05 Total: -29.75 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -70.28 5.45 -64.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928185984.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.000 kcal (2) G-P(sol) polarization free energy of solvation -70.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds