Wall clock time and date at job start Tue Mar 31 2020 11:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47222 * 239.99839 * 2 1 3 5 5 O 1.42898 * 109.47246 * 304.99907 * 4 2 1 6 6 C 1.42895 * 114.00311 * 179.97438 * 5 4 2 7 7 C 1.52995 * 109.47366 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47273 * 295.00132 * 7 6 5 9 9 C 1.52997 * 109.46934 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47802 * 60.00029 * 9 8 7 11 11 C 1.53002 * 109.46852 * 300.00021 * 10 9 8 12 12 C 1.53002 * 109.47104 * 174.99838 * 7 6 5 13 13 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 14 14 C 1.46901 * 110.99793 * 275.00325 * 13 2 1 15 15 C 1.53000 * 109.46769 * 180.02562 * 14 13 2 16 16 C 1.53001 * 109.46886 * 180.02562 * 15 14 13 17 17 S 1.81002 * 109.47152 * 179.97438 * 16 15 14 18 18 C 1.76198 * 100.00092 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99945 * 359.97438 * 18 17 16 20 20 C 1.38802 * 120.00251 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99707 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00286 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47218 * 59.99235 * 22 20 18 24 24 H 1.48496 * 109.47281 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46713 * 299.99590 * 22 20 18 26 26 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 27 27 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 28 28 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46981 * 65.00265 * 4 2 1 30 30 H 1.09007 * 109.46684 * 185.00053 * 4 2 1 31 31 H 1.08999 * 109.47042 * 300.00409 * 6 5 4 32 32 H 1.09007 * 109.46824 * 59.99944 * 6 5 4 33 33 H 1.08997 * 109.47165 * 55.00296 * 7 6 5 34 34 H 1.08996 * 109.46741 * 299.99840 * 8 7 6 35 35 H 1.08994 * 109.46963 * 60.00149 * 8 7 6 36 36 H 1.09005 * 109.47020 * 299.99365 * 9 8 7 37 37 H 1.09006 * 109.46872 * 180.02562 * 9 8 7 38 38 H 1.08991 * 109.47521 * 179.97438 * 10 9 8 39 39 H 1.08997 * 109.46780 * 59.99691 * 10 9 8 40 40 H 1.08997 * 109.47158 * 299.99438 * 11 10 9 41 41 H 1.09002 * 109.47260 * 179.97438 * 11 10 9 42 42 H 1.08993 * 109.47512 * 300.00067 * 12 7 6 43 43 H 1.09005 * 109.47043 * 60.00783 * 12 7 6 44 44 H 1.00898 * 110.99995 * 38.95403 * 13 2 1 45 45 H 1.09002 * 109.47401 * 59.99808 * 14 13 2 46 46 H 1.09001 * 109.46874 * 299.99821 * 14 13 2 47 47 H 1.09001 * 109.47194 * 299.99524 * 15 14 13 48 48 H 1.08992 * 109.47399 * 59.99697 * 15 14 13 49 49 H 1.09001 * 109.47109 * 299.99380 * 16 15 14 50 50 H 1.09002 * 109.47508 * 59.99571 * 16 15 14 51 51 H 0.96996 * 119.99880 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.4702 -2.0304 -1.3094 6 6 1.8836 -2.7926 -2.4452 7 6 1.2163 -4.1688 -2.4063 8 6 1.7230 -4.9471 -1.1903 9 6 1.0562 -6.3235 -1.1518 10 6 1.3996 -7.0928 -2.4290 11 6 0.8929 -6.3145 -3.6449 12 6 1.5592 -4.9382 -3.6835 13 7 2.0196 -0.6925 1.1995 14 6 2.0823 0.2227 2.3469 15 6 2.5961 -0.5328 3.5742 16 6 2.6608 0.4202 4.7694 17 16 3.2679 -0.4737 6.2216 18 6 3.2433 0.8247 7.4124 19 1 2.9153 1.8133 7.1268 20 6 3.6465 0.5774 8.7174 21 7 4.0467 -0.6274 9.0653 22 14 3.6198 1.9536 9.9801 23 1 2.2336 2.4666 10.1239 24 1 4.0932 1.4345 11.2883 25 1 4.5107 3.0539 9.5318 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.7517 -0.1584 -2.1369 30 1 3.1264 -0.7995 -1.2055 31 1 1.5917 -2.2725 -3.3576 32 1 2.9668 -2.9137 -2.4268 33 1 0.1355 -4.0466 -2.3349 34 1 2.8038 -5.0692 -1.2618 35 1 1.4787 -4.3990 -0.2805 36 1 -0.0247 -6.2017 -1.0805 37 1 1.4168 -6.8779 -0.2853 38 1 0.9249 -8.0735 -2.4013 39 1 2.4804 -7.2145 -2.5002 40 1 -0.1880 -6.1927 -3.5737 41 1 1.1379 -6.8622 -4.5549 42 1 1.1982 -4.3838 -4.5497 43 1 2.6400 -5.0605 -3.7549 44 1 1.4495 -1.4979 1.4101 45 1 1.0869 0.6164 2.5525 46 1 2.7587 1.0463 2.1182 47 1 1.9201 -1.3566 3.8031 48 1 3.5915 -0.9261 3.3683 49 1 3.3367 1.2443 4.5409 50 1 1.6652 0.8132 4.9752 51 1 4.3281 -0.8004 9.9773 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932425552.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:09 Heat of formation + Delta-G solvation = -99.599792 kcal Electronic energy + Delta-G solvation = -23768.865280 eV Core-core repulsion = 20406.215113 eV Total energy + Delta-G solvation = -3362.650167 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.197 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.34885 -38.18566 -36.54231 -33.56259 -32.39689 -31.93616 -30.99801 -29.58162 -26.88017 -25.69437 -25.45879 -24.37165 -22.83667 -21.54313 -21.18111 -20.61727 -19.96480 -17.41748 -16.75060 -16.23382 -15.86930 -15.56143 -15.13645 -14.93660 -14.77326 -14.46130 -14.36671 -14.01033 -13.92064 -13.75437 -13.20133 -12.96535 -12.68757 -12.51416 -12.42772 -12.20414 -12.07697 -12.02660 -11.56432 -11.40577 -11.32755 -11.25961 -11.18562 -11.04592 -11.02838 -10.74685 -10.69329 -10.58174 -10.35874 -10.33807 -10.28150 -9.68607 -9.47381 -9.02049 -8.32835 -8.25816 -6.48572 -6.19331 -3.89231 3.23881 3.25217 3.29787 3.49234 3.59539 4.19369 4.27071 4.37278 4.46657 4.52221 4.76794 4.81192 4.95033 4.99857 5.07737 5.14078 5.16071 5.16393 5.23235 5.25132 5.26901 5.32702 5.35757 5.40066 5.41121 5.44232 5.52214 5.60199 5.63063 5.68861 5.75358 5.78886 5.83644 5.85294 5.88501 5.91039 5.99998 6.02557 6.11410 6.17241 6.19465 6.23015 6.39555 6.66504 6.80000 7.03777 7.17990 7.48796 7.63332 8.39668 9.26598 10.88797 Molecular weight = 315.20amu Principal moments of inertia in cm(-1) A = 0.019074 B = 0.001936 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.598425 B =14459.629454 C =15629.880033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.087 3.913 3 H 0.087 0.913 4 C 0.075 3.925 5 O -0.378 6.378 6 C 0.068 3.932 7 C -0.083 4.083 8 C -0.110 4.110 9 C -0.121 4.121 10 C -0.121 4.121 11 C -0.117 4.117 12 C -0.113 4.113 13 N -0.680 5.680 14 C 0.062 3.938 15 C -0.095 4.095 16 C -0.112 4.112 17 S -0.133 6.133 18 C -0.517 4.517 19 H 0.071 0.929 20 C 0.070 3.930 21 N -0.870 5.870 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.042 0.958 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.347 0.653 45 H 0.027 0.973 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.073 0.927 49 H 0.059 0.941 50 H 0.057 0.943 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.873 -6.934 -28.086 29.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.024 4.024 3 H 0.105 0.895 4 C -0.002 4.002 5 O -0.297 6.297 6 C -0.009 4.009 7 C -0.102 4.102 8 C -0.148 4.148 9 C -0.159 4.159 10 C -0.159 4.159 11 C -0.155 4.155 12 C -0.151 4.151 13 N -0.311 5.311 14 C -0.068 4.068 15 C -0.134 4.134 16 C -0.261 4.261 17 S 0.096 5.904 18 C -0.665 4.665 19 H 0.089 0.911 20 C -0.138 4.138 21 N -0.505 5.505 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.200 1.200 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.166 0.834 45 H 0.046 0.954 46 H 0.087 0.913 47 H 0.081 0.919 48 H 0.092 0.908 49 H 0.078 0.922 50 H 0.076 0.924 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.946 -8.127 -27.827 29.593 hybrid contribution -1.133 2.430 0.695 2.769 sum -7.078 -5.698 -27.132 28.613 Atomic orbital electron populations 1.22396 0.96807 1.02857 1.01633 1.21588 0.93360 0.97165 0.90274 0.89542 1.22548 0.97680 0.83541 0.96480 1.87860 1.70083 1.26475 1.45255 1.22495 0.98200 0.91840 0.88383 1.21122 1.00866 0.92652 0.95539 1.21516 0.99920 0.95114 0.98242 1.21551 1.00694 0.96182 0.97430 1.21553 1.01075 0.98395 0.94830 1.21493 1.00318 0.95593 0.98074 1.21510 1.00896 0.95852 0.96808 1.60551 1.57304 1.09799 1.03464 1.22064 0.99145 0.95443 0.90173 1.21230 1.02402 0.97800 0.91920 1.23225 1.02652 1.01276 0.98961 1.84635 1.85494 1.18748 1.01549 1.22657 1.51008 0.96732 0.96086 0.91064 1.25017 0.94666 0.96416 0.97739 1.70017 1.41360 1.20036 1.19128 0.86227 0.78631 0.81101 0.79582 1.19984 1.20822 1.19956 0.92812 0.92580 0.91415 0.93733 0.92614 0.93964 0.93490 0.90609 0.92202 0.90768 0.92124 0.91913 0.92246 0.92054 0.92011 0.92101 0.92080 0.91836 0.83413 0.95442 0.91311 0.91863 0.90799 0.92184 0.92403 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 8.96 37.15 0.33 -1.39 16 2 C 0.09 0.89 2.99 -67.71 -0.20 0.68 16 3 H 0.09 0.85 7.80 -51.93 -0.40 0.44 16 4 C 0.07 0.71 5.77 37.16 0.21 0.92 16 5 O -0.38 -3.86 8.95 -35.23 -0.32 -4.17 16 6 C 0.07 0.56 5.32 37.16 0.20 0.76 16 7 C -0.08 -0.65 2.43 -90.62 -0.22 -0.87 16 8 C -0.11 -0.95 5.10 -26.73 -0.14 -1.09 16 9 C -0.12 -0.94 5.92 -26.73 -0.16 -1.09 16 10 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 11 C -0.12 -0.72 5.92 -26.75 -0.16 -0.88 16 12 C -0.11 -0.72 5.20 -26.75 -0.14 -0.86 16 13 N -0.68 -8.40 6.20 -106.72 -0.66 -9.06 16 14 C 0.06 0.85 5.48 -3.82 -0.02 0.83 16 15 C -0.09 -1.60 5.48 -26.73 -0.15 -1.75 16 16 C -0.11 -2.32 5.67 37.16 0.21 -2.10 16 17 S -0.13 -3.55 21.44 -107.50 -2.30 -5.85 16 18 C -0.52 -15.08 9.50 30.94 0.29 -14.78 16 19 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 20 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 21 N -0.87 -26.35 13.22 55.49 0.73 -25.61 16 22 Si 0.92 21.80 29.55 -169.99 -5.02 16.78 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 26 H 0.05 0.54 7.45 -51.93 -0.39 0.16 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.70 7.55 -51.93 -0.39 0.31 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.76 7.82 -51.93 -0.41 0.35 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.35 4.35 8.47 -39.29 -0.33 4.02 16 45 H 0.03 0.37 7.44 -51.93 -0.39 -0.02 16 46 H 0.07 0.94 8.06 -51.93 -0.42 0.52 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 49 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 50 H 0.06 1.18 8.14 -51.91 -0.42 0.76 16 51 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 411.24 15.07 6.20 6.20 Total: -1.00 -30.76 411.24 -11.86 -42.62 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -10.30 Total: -0.26 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -0.19 Total: -20.64 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.07 Total: -34.67 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: -0.32 Total: -4.17 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -2.30 Total: -5.85 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.76 -11.86 -42.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932425552.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.978 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds