Wall clock time and date at job start Tue Mar 31 2020 11:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47222 * 239.99839 * 2 1 3 5 5 O 1.42898 * 109.47246 * 304.99907 * 4 2 1 6 6 C 1.42895 * 114.00311 * 179.97438 * 5 4 2 7 7 C 1.52995 * 109.47366 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47273 * 295.00132 * 7 6 5 9 9 C 1.52997 * 109.46934 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47802 * 60.00029 * 9 8 7 11 11 C 1.53002 * 109.46852 * 300.00021 * 10 9 8 12 12 C 1.53002 * 109.47104 * 174.99838 * 7 6 5 13 13 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 14 14 C 1.46901 * 110.99793 * 275.00325 * 13 2 1 15 15 C 1.53000 * 109.46769 * 180.02562 * 14 13 2 16 16 C 1.53001 * 109.46886 * 180.02562 * 15 14 13 17 17 S 1.81002 * 109.47152 * 179.97438 * 16 15 14 18 18 C 1.76198 * 100.00092 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99945 * 359.97438 * 18 17 16 20 20 C 1.38802 * 120.00251 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99707 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00286 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47218 * 59.99235 * 22 20 18 24 24 H 1.48496 * 109.47281 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46713 * 299.99590 * 22 20 18 26 26 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 27 27 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 28 28 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46981 * 65.00265 * 4 2 1 30 30 H 1.09007 * 109.46684 * 185.00053 * 4 2 1 31 31 H 1.08999 * 109.47042 * 300.00409 * 6 5 4 32 32 H 1.09007 * 109.46824 * 59.99944 * 6 5 4 33 33 H 1.08997 * 109.47165 * 55.00296 * 7 6 5 34 34 H 1.08996 * 109.46741 * 299.99840 * 8 7 6 35 35 H 1.08994 * 109.46963 * 60.00149 * 8 7 6 36 36 H 1.09005 * 109.47020 * 299.99365 * 9 8 7 37 37 H 1.09006 * 109.46872 * 180.02562 * 9 8 7 38 38 H 1.08991 * 109.47521 * 179.97438 * 10 9 8 39 39 H 1.08997 * 109.46780 * 59.99691 * 10 9 8 40 40 H 1.08997 * 109.47158 * 299.99438 * 11 10 9 41 41 H 1.09002 * 109.47260 * 179.97438 * 11 10 9 42 42 H 1.08993 * 109.47512 * 300.00067 * 12 7 6 43 43 H 1.09005 * 109.47043 * 60.00783 * 12 7 6 44 44 H 1.00898 * 110.99995 * 38.95403 * 13 2 1 45 45 H 1.09002 * 109.47401 * 59.99808 * 14 13 2 46 46 H 1.09001 * 109.46874 * 299.99821 * 14 13 2 47 47 H 1.09001 * 109.47194 * 299.99524 * 15 14 13 48 48 H 1.08992 * 109.47399 * 59.99697 * 15 14 13 49 49 H 1.09001 * 109.47109 * 299.99380 * 16 15 14 50 50 H 1.09002 * 109.47508 * 59.99571 * 16 15 14 51 51 H 0.96996 * 119.99880 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.4702 -2.0304 -1.3094 6 6 1.8836 -2.7926 -2.4452 7 6 1.2163 -4.1688 -2.4063 8 6 1.7230 -4.9471 -1.1903 9 6 1.0562 -6.3235 -1.1518 10 6 1.3996 -7.0928 -2.4290 11 6 0.8929 -6.3145 -3.6449 12 6 1.5592 -4.9382 -3.6835 13 7 2.0196 -0.6925 1.1995 14 6 2.0823 0.2227 2.3469 15 6 2.5961 -0.5328 3.5742 16 6 2.6608 0.4202 4.7694 17 16 3.2679 -0.4737 6.2216 18 6 3.2433 0.8247 7.4124 19 1 2.9153 1.8133 7.1268 20 6 3.6465 0.5774 8.7174 21 7 4.0467 -0.6274 9.0653 22 14 3.6198 1.9536 9.9801 23 1 2.2336 2.4666 10.1239 24 1 4.0932 1.4345 11.2883 25 1 4.5107 3.0539 9.5318 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.7517 -0.1584 -2.1369 30 1 3.1264 -0.7995 -1.2055 31 1 1.5917 -2.2725 -3.3576 32 1 2.9668 -2.9137 -2.4268 33 1 0.1355 -4.0466 -2.3349 34 1 2.8038 -5.0692 -1.2618 35 1 1.4787 -4.3990 -0.2805 36 1 -0.0247 -6.2017 -1.0805 37 1 1.4168 -6.8779 -0.2853 38 1 0.9249 -8.0735 -2.4013 39 1 2.4804 -7.2145 -2.5002 40 1 -0.1880 -6.1927 -3.5737 41 1 1.1379 -6.8622 -4.5549 42 1 1.1982 -4.3838 -4.5497 43 1 2.6400 -5.0605 -3.7549 44 1 1.4495 -1.4979 1.4101 45 1 1.0869 0.6164 2.5525 46 1 2.7587 1.0463 2.1182 47 1 1.9201 -1.3566 3.8031 48 1 3.5915 -0.9261 3.3683 49 1 3.3367 1.2443 4.5409 50 1 1.6652 0.8132 4.9752 51 1 4.3281 -0.8004 9.9773 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932425552.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:08 Heat of formation + Delta-G solvation = -116.185904 kcal Electronic energy + Delta-G solvation = -23769.584508 eV Core-core repulsion = 20406.215113 eV Total energy + Delta-G solvation = -3363.369395 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.197 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.01126 -38.96056 -37.45079 -34.77231 -34.56733 -32.63152 -31.58638 -30.66704 -27.83264 -27.60344 -26.21591 -25.67929 -23.42307 -22.48801 -22.12134 -21.53831 -20.57372 -19.53906 -17.52570 -17.01045 -16.89579 -16.73512 -16.50860 -16.25844 -15.97758 -15.52999 -15.13794 -14.97048 -14.80535 -14.77006 -14.50081 -14.01006 -13.78622 -13.56535 -13.19599 -13.13881 -13.08967 -12.99844 -12.89070 -12.79661 -12.65974 -12.44980 -12.32446 -12.04461 -11.98448 -11.90360 -11.79278 -11.74133 -11.31608 -11.28127 -11.13400 -10.93881 -10.88230 -10.38621 -10.31621 -9.30537 -8.66946 -8.37044 -6.13742 1.30983 1.40808 1.47647 1.74717 2.28681 2.81485 2.96764 3.16445 3.35859 3.77432 3.87983 3.92730 3.96717 4.04007 4.16789 4.24027 4.31540 4.34110 4.37781 4.43358 4.48311 4.52444 4.55537 4.58818 4.61994 4.67165 4.72018 4.76786 4.78784 4.81042 4.81745 4.85502 4.96805 5.02232 5.06646 5.20769 5.22327 5.27587 5.29766 5.32078 5.32864 5.34171 5.39171 5.43278 5.52526 5.61368 6.10789 6.17881 6.42342 6.47761 7.04579 8.72186 Molecular weight = 315.20amu Principal moments of inertia in cm(-1) A = 0.019074 B = 0.001936 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.598425 B =14459.629454 C =15629.880033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.085 3.915 3 H 0.095 0.905 4 C 0.076 3.924 5 O -0.394 6.394 6 C 0.066 3.934 7 C -0.079 4.079 8 C -0.108 4.108 9 C -0.121 4.121 10 C -0.120 4.120 11 C -0.116 4.116 12 C -0.110 4.110 13 N -0.686 5.686 14 C 0.076 3.924 15 C -0.083 4.083 16 C -0.087 4.087 17 S -0.200 6.200 18 C -0.539 4.539 19 H 0.073 0.927 20 C 0.013 3.987 21 N -0.908 5.908 22 Si 0.995 3.005 23 H -0.264 1.264 24 H -0.274 1.274 25 H -0.264 1.264 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.345 0.655 45 H 0.034 0.966 46 H 0.074 0.926 47 H 0.059 0.941 48 H 0.064 0.936 49 H 0.063 0.937 50 H 0.061 0.939 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.468 -5.721 -29.564 31.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 H 0.113 0.887 4 C -0.001 4.001 5 O -0.313 6.313 6 C -0.011 4.011 7 C -0.098 4.098 8 C -0.146 4.146 9 C -0.159 4.159 10 C -0.157 4.157 11 C -0.154 4.154 12 C -0.147 4.147 13 N -0.317 5.317 14 C -0.055 4.055 15 C -0.122 4.122 16 C -0.236 4.236 17 S 0.028 5.972 18 C -0.687 4.687 19 H 0.091 0.909 20 C -0.191 4.191 21 N -0.544 5.544 22 Si 0.817 3.183 23 H -0.189 1.189 24 H -0.199 1.199 25 H -0.189 1.189 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.163 0.837 45 H 0.052 0.948 46 H 0.093 0.907 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.080 0.920 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.544 -6.918 -29.328 30.835 hybrid contribution -0.959 2.012 1.070 2.473 sum -7.503 -4.906 -28.258 29.646 Atomic orbital electron populations 1.22306 0.96241 1.02316 1.02065 1.21686 0.93783 0.97491 0.89487 0.88663 1.22546 0.97194 0.83557 0.96804 1.87848 1.70311 1.26947 1.46235 1.22592 0.98139 0.91977 0.88370 1.21092 1.00289 0.92551 0.95825 1.21464 0.99692 0.95559 0.97877 1.21543 1.00438 0.95803 0.98066 1.21548 1.01136 0.98629 0.94428 1.21499 1.00249 0.95437 0.98193 1.21493 1.01039 0.95906 0.96269 1.60529 1.57853 1.09709 1.03620 1.21847 0.99345 0.95145 0.89182 1.21114 1.02050 0.97194 0.91858 1.23150 1.02243 1.01225 0.96985 1.84672 1.86432 1.21080 1.05005 1.23016 1.51503 0.97072 0.97118 0.90879 1.26105 0.93791 0.99261 0.99988 1.70157 1.42042 1.22339 1.19849 0.85048 0.79176 0.77556 0.76520 1.18913 1.19923 1.18875 0.93328 0.91143 0.92412 0.91725 0.93336 0.92563 0.93678 0.91268 0.92690 0.92893 0.92290 0.92415 0.91590 0.92119 0.92015 0.90917 0.90955 0.91727 0.83680 0.94806 0.90707 0.92219 0.91751 0.91839 0.92019 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 8.96 71.98 0.65 -2.37 16 2 C 0.09 1.61 2.99 44.91 0.13 1.74 16 3 H 0.10 1.64 7.80 -2.39 -0.02 1.62 16 4 C 0.08 1.32 5.77 71.98 0.42 1.74 16 5 O -0.39 -7.69 8.95 -148.98 -1.33 -9.02 16 6 C 0.07 1.02 5.32 71.98 0.38 1.40 16 7 C -0.08 -1.17 2.43 -10.79 -0.03 -1.20 16 8 C -0.11 -1.89 5.10 30.59 0.16 -1.73 16 9 C -0.12 -1.87 5.92 30.59 0.18 -1.69 16 10 C -0.12 -1.50 5.92 30.59 0.18 -1.31 16 11 C -0.12 -1.25 5.92 30.58 0.18 -1.07 16 12 C -0.11 -1.23 5.20 30.58 0.16 -1.07 16 13 N -0.69 -16.26 6.20 -491.55 -3.05 -19.30 16 14 C 0.08 1.97 5.48 86.30 0.47 2.44 16 15 C -0.08 -2.78 5.48 30.59 0.17 -2.61 16 16 C -0.09 -3.57 5.67 71.98 0.41 -3.16 16 17 S -0.20 -10.98 21.44 -56.49 -1.21 -12.19 16 18 C -0.54 -31.76 9.50 67.95 0.65 -31.12 16 19 H 0.07 4.12 7.80 -2.91 -0.02 4.10 16 20 C 0.01 0.78 5.49 84.86 0.47 1.24 16 21 N -0.91 -55.71 13.22 21.65 0.29 -55.42 16 22 Si 1.00 44.46 29.55 68.60 2.03 46.49 16 23 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 26 H 0.05 0.90 7.45 -2.39 -0.02 0.89 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.14 7.55 -2.39 -0.02 1.12 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.05 1.13 7.82 -2.39 -0.02 1.11 16 36 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.34 8.50 8.47 -89.70 -0.76 7.74 16 45 H 0.03 0.85 7.44 -2.39 -0.02 0.83 16 46 H 0.07 1.89 8.06 -2.39 -0.02 1.87 16 47 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 48 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 49 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 50 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 51 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -66.42 411.24 1.38 -65.04 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.09 Total: 23.17 kcal Atomic # 6 Polarization: -43.34 SS G_CDS: 4.57 Total: -38.77 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: -2.76 Total: -74.73 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -1.33 Total: -9.02 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: -10.98 SS G_CDS: -1.21 Total: -12.19 kcal Total: -66.42 1.38 -65.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932425552.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.146 kcal (2) G-P(sol) polarization free energy of solvation -66.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds