Wall clock time and date at job start Tue Mar 31 2020 11:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.50711 * 120.00101 * 2 1 4 4 C 1.31003 * 120.00119 * 180.02562 * 2 1 3 5 5 C 1.50692 * 120.00060 * 354.69005 * 4 2 1 6 6 C 1.53004 * 109.47367 * 121.09615 * 5 4 2 7 7 C 1.52993 * 109.47077 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47620 * 305.00454 * 7 6 5 9 9 C 1.53003 * 109.47125 * 185.00213 * 7 6 5 10 10 N 1.46511 * 109.47176 * 65.00218 * 7 6 5 11 11 C 1.34768 * 120.00046 * 204.99665 * 10 7 6 12 12 O 1.21287 * 120.00279 * 359.97438 * 11 10 7 13 13 C 1.50696 * 120.00337 * 179.97438 * 11 10 7 14 14 C 1.50699 * 109.47797 * 180.02562 * 13 11 10 15 15 C 1.37633 * 120.12699 * 265.00401 * 14 13 11 16 16 C 1.38618 * 120.24777 * 180.29272 * 15 14 13 17 17 C 1.38655 * 120.49996 * 359.44631 * 16 15 14 18 18 C 1.37598 * 120.24543 * 0.55382 * 17 16 15 19 19 C 1.40692 * 120.12653 * 85.02160 * 14 13 11 20 20 C 1.41396 * 120.24511 * 359.95776 * 19 14 13 21 21 H 1.07998 * 120.00061 * 325.62536 * 20 19 14 22 22 C 1.39945 * 119.99845 * 145.62405 * 20 19 14 23 23 N 1.30824 * 119.99999 * 165.75906 * 22 20 19 24 24 Si 1.86799 * 120.00334 * 345.75522 * 22 20 19 25 25 H 1.48503 * 109.46661 * 86.68848 * 24 22 20 26 26 H 1.48497 * 109.47425 * 206.69489 * 24 22 20 27 27 H 1.48506 * 109.47075 * 326.69467 * 24 22 20 28 28 H 1.09000 * 109.46701 * 266.29285 * 1 2 3 29 29 H 1.09003 * 109.46884 * 26.28807 * 1 2 3 30 30 H 1.09002 * 109.47087 * 146.29218 * 1 2 3 31 31 H 1.09002 * 109.47188 * 240.00085 * 3 2 1 32 32 H 1.09004 * 109.46729 * 0.02562 * 3 2 1 33 33 H 1.08995 * 109.46608 * 119.99866 * 3 2 1 34 34 H 1.08004 * 119.99541 * 174.69284 * 4 2 1 35 35 H 1.09005 * 109.46701 * 1.09720 * 5 4 2 36 36 H 1.09006 * 109.47182 * 241.10149 * 5 4 2 37 37 H 1.08999 * 109.46838 * 60.00033 * 6 5 4 38 38 H 1.08998 * 109.46615 * 300.00510 * 6 5 4 39 39 H 1.09000 * 109.47477 * 180.02562 * 9 7 6 40 40 H 1.09005 * 109.46687 * 300.00099 * 9 7 6 41 41 H 1.08992 * 109.46866 * 59.99878 * 9 7 6 42 42 H 0.96998 * 119.99734 * 24.99979 * 10 7 6 43 43 H 1.09005 * 109.46788 * 59.99699 * 13 11 10 44 44 H 1.09001 * 109.47028 * 300.00428 * 13 11 10 45 45 H 1.08002 * 119.87652 * 0.02562 * 15 14 13 46 46 H 1.08000 * 119.74547 * 179.69657 * 16 15 14 47 47 H 1.07998 * 119.87848 * 180.29560 * 17 16 15 48 48 H 1.08000 * 120.12638 * 179.74785 * 18 17 16 49 49 H 0.96999 * 120.00247 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3052 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4134 -2.4368 0.1197 6 6 1.7049 -3.3075 -1.1042 7 6 0.9454 -4.6299 -0.9818 8 1 1.2003 -5.1093 -0.0367 9 6 1.3331 -5.5500 -2.1413 10 7 -0.4960 -4.3711 -1.0248 11 6 -1.3539 -5.2391 -0.4531 12 8 -0.9328 -6.2349 0.0966 13 6 -2.8365 -4.9726 -0.4967 14 6 -3.5680 -6.0852 0.2090 15 6 -4.0710 -7.1459 -0.5095 16 6 -4.7495 -8.1676 0.1364 17 6 -4.9197 -8.1398 1.5122 18 6 -4.4253 -7.0892 2.2505 19 6 -3.7397 -6.0434 1.6048 20 6 -3.2268 -4.9591 2.3534 21 1 -2.3031 -4.4857 2.0548 22 6 -3.9161 -4.4992 3.4811 23 7 -3.3232 -3.6981 4.3285 24 14 -5.6829 -5.0290 3.7764 25 1 -5.6964 -6.3178 4.5139 26 1 -6.3832 -3.9929 4.5772 27 1 -6.3736 -5.1976 2.4726 28 1 -0.3633 -0.0664 1.0255 29 1 -0.3633 0.9214 -0.4552 30 1 -0.3633 -0.8549 -0.5703 31 1 2.8872 1.3629 -0.8900 32 1 1.5522 2.1337 0.0005 33 1 2.8871 1.3628 0.8900 34 1 3.2386 -1.1364 -0.0870 35 1 0.3434 -2.2368 0.1768 36 1 1.7343 -2.9584 1.0215 37 1 2.7749 -3.5074 -1.1614 38 1 1.3841 -2.7858 -2.0059 39 1 0.7916 -6.4920 -2.0544 40 1 1.0780 -5.0705 -3.0864 41 1 2.4054 -5.7425 -2.1093 42 1 -0.8329 -3.5749 -1.4647 43 1 -3.1660 -4.9215 -1.5345 44 1 -3.0502 -4.0258 -0.0006 45 1 -3.9403 -7.1801 -1.5810 46 1 -5.1452 -8.9936 -0.4360 47 1 -5.4459 -8.9435 2.0056 48 1 -4.5624 -7.0674 3.3216 49 1 -3.8011 -3.3790 5.1100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117770681.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:02 Heat of formation + Delta-G solvation = -32.188932 kcal Electronic energy + Delta-G solvation = -26398.498048 eV Core-core repulsion = 22903.327084 eV Total energy + Delta-G solvation = -3495.170964 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.44359 -37.86917 -37.16207 -35.47291 -33.49463 -32.23644 -31.60224 -30.28277 -30.02720 -27.84085 -26.85595 -26.48879 -24.78733 -22.80668 -21.46466 -21.05514 -20.21194 -19.34045 -17.83622 -17.28471 -16.43584 -16.11282 -15.52934 -15.18009 -14.90499 -14.39775 -14.28569 -14.13683 -13.71287 -13.65992 -13.43276 -13.22603 -12.91545 -12.70642 -12.54309 -12.46443 -12.19924 -12.02733 -11.95217 -11.77254 -11.73925 -11.44803 -11.35453 -11.20353 -10.92734 -10.71877 -10.68010 -10.58738 -10.50173 -10.23306 -9.66042 -9.52975 -9.10411 -9.02955 -8.71074 -8.57388 -7.56301 -7.41929 -6.83459 -4.41792 2.15217 2.60772 2.74816 3.17551 3.24108 3.35257 3.41447 3.72836 4.04580 4.59588 4.62709 4.89410 4.97405 5.10159 5.16042 5.32032 5.38721 5.44053 5.49627 5.59301 5.61734 5.69604 5.70687 5.74854 5.80716 5.83545 5.86685 5.90615 5.98759 6.03841 6.07217 6.12959 6.23294 6.26478 6.29111 6.34018 6.37455 6.63864 6.69486 6.78746 6.92040 6.95811 7.01166 7.27414 7.47563 7.70549 7.78862 7.96253 8.04707 8.20300 8.43981 8.74436 8.89956 8.94756 10.19253 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011913 B = 0.004067 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.767216 B = 6882.479321 C = 8677.575706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.136 4.136 3 C -0.116 4.116 4 C -0.164 4.164 5 C -0.099 4.099 6 C -0.117 4.117 7 C 0.141 3.859 8 H 0.086 0.914 9 C -0.161 4.161 10 N -0.737 5.737 11 C 0.517 3.483 12 O -0.522 6.522 13 C -0.076 4.076 14 C -0.159 4.159 15 C -0.073 4.073 16 C -0.238 4.238 17 C -0.083 4.083 18 C -0.234 4.234 19 C 0.110 3.890 20 C -0.447 4.447 21 H 0.089 0.911 22 C 0.085 3.915 23 N -0.817 5.817 24 Si 0.910 3.090 25 H -0.268 1.268 26 H -0.293 1.293 27 H -0.249 1.249 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.393 0.607 43 H 0.077 0.923 44 H 0.100 0.900 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.103 0.897 49 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.523 7.322 -10.663 14.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.136 4.136 3 C -0.173 4.173 4 C -0.182 4.182 5 C -0.136 4.136 6 C -0.155 4.155 7 C 0.036 3.964 8 H 0.104 0.896 9 C -0.219 4.219 10 N -0.391 5.391 11 C 0.305 3.695 12 O -0.396 6.396 13 C -0.116 4.116 14 C -0.161 4.161 15 C -0.091 4.091 16 C -0.257 4.257 17 C -0.101 4.101 18 C -0.253 4.253 19 C 0.107 3.893 20 C -0.477 4.477 21 H 0.107 0.893 22 C -0.133 4.133 23 N -0.442 5.442 24 Si 0.737 3.263 25 H -0.195 1.195 26 H -0.221 1.221 27 H -0.173 1.173 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.227 0.773 43 H 0.095 0.905 44 H 0.118 0.882 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.110 0.890 48 H 0.121 0.879 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.874 6.767 -10.019 14.429 hybrid contribution -0.726 0.181 0.144 0.762 sum 7.149 6.949 -9.875 14.032 Atomic orbital electron populations 1.20936 0.92180 1.02110 1.02629 1.21633 0.95997 0.94891 1.01107 1.20814 0.99732 0.95058 1.01649 1.22599 0.99147 0.93971 1.02449 1.20829 1.01141 0.93465 0.98179 1.21806 1.00424 0.94824 0.98462 1.20882 0.80750 0.95043 0.99753 0.89589 1.22164 1.01166 1.00440 0.98177 1.46171 1.06092 1.26748 1.60134 1.21036 0.89020 0.82599 0.76865 1.90682 1.79271 1.27575 1.42116 1.20311 0.90021 1.00891 1.00368 1.19145 1.06657 0.97037 0.93277 1.20450 0.97437 0.93896 0.97305 1.20365 1.10019 1.00971 0.94332 1.20619 0.98431 0.97014 0.94073 1.21188 1.08997 0.96624 0.98473 1.17518 0.89011 0.91930 0.90859 1.19368 1.08382 1.13200 1.06699 0.89262 1.26088 1.00469 0.93191 0.93519 1.69679 1.38053 1.27060 1.09439 0.86395 0.82227 0.77616 0.80082 1.19455 1.22088 1.17256 0.91177 0.92291 0.91280 0.91987 0.92144 0.91856 0.87784 0.90192 0.90848 0.90879 0.91676 0.92022 0.92869 0.92212 0.77342 0.90484 0.88178 0.89095 0.88999 0.89002 0.87896 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 9.03 36.00 0.33 -0.99 16 2 C -0.14 -1.45 6.05 -101.06 -0.61 -2.06 16 3 C -0.12 -1.01 10.04 36.01 0.36 -0.65 16 4 C -0.16 -1.78 9.15 -36.03 -0.33 -2.11 16 5 C -0.10 -1.18 5.25 -27.88 -0.15 -1.33 16 6 C -0.12 -1.23 4.74 -26.73 -0.13 -1.36 16 7 C 0.14 1.87 2.57 -67.93 -0.17 1.69 16 8 H 0.09 1.40 7.58 -51.93 -0.39 1.00 16 9 C -0.16 -1.95 9.48 37.16 0.35 -1.59 16 10 N -0.74 -10.65 4.53 -53.80 -0.24 -10.89 16 11 C 0.52 9.96 7.41 -10.99 -0.08 9.88 16 12 O -0.52 -12.48 15.70 5.55 0.09 -12.39 16 13 C -0.08 -1.45 5.21 -29.04 -0.15 -1.60 16 14 C -0.16 -3.69 4.43 -103.92 -0.46 -4.15 16 15 C -0.07 -1.58 9.66 -39.66 -0.38 -1.96 16 16 C -0.24 -5.17 10.05 -39.29 -0.39 -5.56 16 17 C -0.08 -1.89 10.02 -39.66 -0.40 -2.29 16 18 C -0.23 -5.89 7.27 -38.87 -0.28 -6.17 16 19 C 0.11 2.83 5.02 -106.83 -0.54 2.30 16 20 C -0.45 -12.09 8.46 -37.74 -0.32 -12.41 16 21 H 0.09 2.55 7.18 -52.49 -0.38 2.17 16 22 C 0.08 2.23 5.44 -17.34 -0.09 2.14 16 23 N -0.82 -21.96 13.93 55.55 0.77 -21.19 16 24 Si 0.91 21.14 24.65 -169.99 -4.19 16.95 16 25 H -0.27 -6.15 6.38 56.52 0.36 -5.79 16 26 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.25 -5.88 7.10 56.52 0.40 -5.48 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.55 7.98 -51.93 -0.41 0.14 16 30 H 0.07 0.73 6.42 -51.93 -0.33 0.40 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.48 7.89 -51.93 -0.41 0.07 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.10 1.02 8.05 -52.48 -0.42 0.60 16 35 H 0.08 1.04 5.12 -51.93 -0.27 0.77 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.39 4.55 8.60 -40.82 -0.35 4.20 16 43 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 44 H 0.10 1.91 7.20 -51.93 -0.37 1.53 16 45 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 46 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 47 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 48 H 0.10 2.60 4.83 -52.49 -0.25 2.34 16 49 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 LS Contribution 393.33 15.07 5.93 5.93 Total: -1.00 -30.85 393.33 -9.36 -40.20 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -8.26 Total: 9.62 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: -3.45 Total: -28.23 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: 0.53 Total: -32.08 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.19 Total: 16.95 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.85 -9.36 -40.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117770681.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.015 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds