Wall clock time and date at job start Tue Mar 31 2020 11:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.50711 * 120.00101 * 2 1 4 4 C 1.31003 * 120.00119 * 180.02562 * 2 1 3 5 5 C 1.50692 * 120.00060 * 354.69005 * 4 2 1 6 6 C 1.53004 * 109.47367 * 121.09615 * 5 4 2 7 7 C 1.52993 * 109.47077 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47620 * 305.00454 * 7 6 5 9 9 C 1.53003 * 109.47125 * 185.00213 * 7 6 5 10 10 N 1.46511 * 109.47176 * 65.00218 * 7 6 5 11 11 C 1.34768 * 120.00046 * 204.99665 * 10 7 6 12 12 O 1.21287 * 120.00279 * 359.97438 * 11 10 7 13 13 C 1.50696 * 120.00337 * 179.97438 * 11 10 7 14 14 C 1.50699 * 109.47797 * 180.02562 * 13 11 10 15 15 C 1.37633 * 120.12699 * 265.00401 * 14 13 11 16 16 C 1.38618 * 120.24777 * 180.29272 * 15 14 13 17 17 C 1.38655 * 120.49996 * 359.44631 * 16 15 14 18 18 C 1.37598 * 120.24543 * 0.55382 * 17 16 15 19 19 C 1.40692 * 120.12653 * 85.02160 * 14 13 11 20 20 C 1.41396 * 120.24511 * 359.95776 * 19 14 13 21 21 H 1.07998 * 120.00061 * 325.62536 * 20 19 14 22 22 C 1.39945 * 119.99845 * 145.62405 * 20 19 14 23 23 N 1.30824 * 119.99999 * 165.75906 * 22 20 19 24 24 Si 1.86799 * 120.00334 * 345.75522 * 22 20 19 25 25 H 1.48503 * 109.46661 * 86.68848 * 24 22 20 26 26 H 1.48497 * 109.47425 * 206.69489 * 24 22 20 27 27 H 1.48506 * 109.47075 * 326.69467 * 24 22 20 28 28 H 1.09000 * 109.46701 * 266.29285 * 1 2 3 29 29 H 1.09003 * 109.46884 * 26.28807 * 1 2 3 30 30 H 1.09002 * 109.47087 * 146.29218 * 1 2 3 31 31 H 1.09002 * 109.47188 * 240.00085 * 3 2 1 32 32 H 1.09004 * 109.46729 * 0.02562 * 3 2 1 33 33 H 1.08995 * 109.46608 * 119.99866 * 3 2 1 34 34 H 1.08004 * 119.99541 * 174.69284 * 4 2 1 35 35 H 1.09005 * 109.46701 * 1.09720 * 5 4 2 36 36 H 1.09006 * 109.47182 * 241.10149 * 5 4 2 37 37 H 1.08999 * 109.46838 * 60.00033 * 6 5 4 38 38 H 1.08998 * 109.46615 * 300.00510 * 6 5 4 39 39 H 1.09000 * 109.47477 * 180.02562 * 9 7 6 40 40 H 1.09005 * 109.46687 * 300.00099 * 9 7 6 41 41 H 1.08992 * 109.46866 * 59.99878 * 9 7 6 42 42 H 0.96998 * 119.99734 * 24.99979 * 10 7 6 43 43 H 1.09005 * 109.46788 * 59.99699 * 13 11 10 44 44 H 1.09001 * 109.47028 * 300.00428 * 13 11 10 45 45 H 1.08002 * 119.87652 * 0.02562 * 15 14 13 46 46 H 1.08000 * 119.74547 * 179.69657 * 16 15 14 47 47 H 1.07998 * 119.87848 * 180.29560 * 17 16 15 48 48 H 1.08000 * 120.12638 * 179.74785 * 18 17 16 49 49 H 0.96999 * 120.00247 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3052 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4134 -2.4368 0.1197 6 6 1.7049 -3.3075 -1.1042 7 6 0.9454 -4.6299 -0.9818 8 1 1.2003 -5.1093 -0.0367 9 6 1.3331 -5.5500 -2.1413 10 7 -0.4960 -4.3711 -1.0248 11 6 -1.3539 -5.2391 -0.4531 12 8 -0.9328 -6.2349 0.0966 13 6 -2.8365 -4.9726 -0.4967 14 6 -3.5680 -6.0852 0.2090 15 6 -4.0710 -7.1459 -0.5095 16 6 -4.7495 -8.1676 0.1364 17 6 -4.9197 -8.1398 1.5122 18 6 -4.4253 -7.0892 2.2505 19 6 -3.7397 -6.0434 1.6048 20 6 -3.2268 -4.9591 2.3534 21 1 -2.3031 -4.4857 2.0548 22 6 -3.9161 -4.4992 3.4811 23 7 -3.3232 -3.6981 4.3285 24 14 -5.6829 -5.0290 3.7764 25 1 -5.6964 -6.3178 4.5139 26 1 -6.3832 -3.9929 4.5772 27 1 -6.3736 -5.1976 2.4726 28 1 -0.3633 -0.0664 1.0255 29 1 -0.3633 0.9214 -0.4552 30 1 -0.3633 -0.8549 -0.5703 31 1 2.8872 1.3629 -0.8900 32 1 1.5522 2.1337 0.0005 33 1 2.8871 1.3628 0.8900 34 1 3.2386 -1.1364 -0.0870 35 1 0.3434 -2.2368 0.1768 36 1 1.7343 -2.9584 1.0215 37 1 2.7749 -3.5074 -1.1614 38 1 1.3841 -2.7858 -2.0059 39 1 0.7916 -6.4920 -2.0544 40 1 1.0780 -5.0705 -3.0864 41 1 2.4054 -5.7425 -2.1093 42 1 -0.8329 -3.5749 -1.4647 43 1 -3.1660 -4.9215 -1.5345 44 1 -3.0502 -4.0258 -0.0006 45 1 -3.9403 -7.1801 -1.5810 46 1 -5.1452 -8.9936 -0.4360 47 1 -5.4459 -8.9435 2.0056 48 1 -4.5624 -7.0674 3.3216 49 1 -3.8011 -3.3790 5.1100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117770681.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:01 Heat of formation + Delta-G solvation = -48.912702 kcal Electronic energy + Delta-G solvation = -26399.223245 eV Core-core repulsion = 22903.327084 eV Total energy + Delta-G solvation = -3495.896161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.93537 -39.47908 -38.28692 -36.64223 -35.43589 -33.73801 -32.93940 -32.13870 -31.15811 -28.65542 -28.48081 -27.38155 -26.65409 -23.85149 -23.18011 -22.48490 -21.53867 -20.97441 -19.22786 -18.70064 -17.88386 -17.62702 -17.04841 -16.52209 -16.23700 -15.98486 -15.51459 -15.46503 -15.08731 -15.03106 -14.69961 -14.50752 -14.49106 -13.94868 -13.80947 -13.70259 -13.64373 -13.26300 -13.12664 -13.01355 -12.79198 -12.68262 -12.62689 -12.61785 -12.49993 -12.29709 -12.09834 -12.00926 -11.56057 -11.53939 -11.44721 -11.36452 -10.92581 -10.70048 -9.96373 -9.51051 -9.38603 -9.25885 -8.80610 -6.43708 0.80699 0.89630 1.28163 1.29699 1.39443 1.48553 1.88724 2.15003 2.41968 2.69540 3.53979 3.68954 3.99818 4.09896 4.10567 4.15589 4.24610 4.30492 4.38162 4.44706 4.49530 4.56693 4.59387 4.67096 4.68677 4.74434 4.76905 4.85043 4.89521 4.91674 4.96217 4.96571 4.99755 5.05563 5.12337 5.16476 5.18270 5.25530 5.31325 5.37470 5.40098 5.68297 5.71300 5.83166 5.87837 5.96742 6.06450 6.08297 6.32177 6.47441 6.72958 6.83555 6.93259 7.50668 8.27554 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011913 B = 0.004067 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.767216 B = 6882.479321 C = 8677.575706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.140 4.140 3 C -0.115 4.115 4 C -0.170 4.170 5 C -0.099 4.099 6 C -0.103 4.103 7 C 0.137 3.863 8 H 0.048 0.952 9 C -0.153 4.153 10 N -0.717 5.717 11 C 0.517 3.483 12 O -0.578 6.578 13 C -0.077 4.077 14 C -0.165 4.165 15 C -0.082 4.082 16 C -0.225 4.225 17 C -0.095 4.095 18 C -0.257 4.257 19 C 0.082 3.918 20 C -0.471 4.471 21 H 0.055 0.945 22 C 0.048 3.952 23 N -0.859 5.859 24 Si 0.962 3.038 25 H -0.266 1.266 26 H -0.279 1.279 27 H -0.254 1.254 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.119 0.881 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.032 0.968 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.410 0.590 43 H 0.120 0.880 44 H 0.093 0.907 45 H 0.127 0.873 46 H 0.129 0.871 47 H 0.121 0.879 48 H 0.094 0.906 49 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.157 7.259 -13.673 17.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.140 4.140 3 C -0.171 4.171 4 C -0.188 4.188 5 C -0.136 4.136 6 C -0.140 4.140 7 C 0.033 3.967 8 H 0.066 0.934 9 C -0.211 4.211 10 N -0.371 5.371 11 C 0.305 3.695 12 O -0.457 6.457 13 C -0.116 4.116 14 C -0.166 4.166 15 C -0.101 4.101 16 C -0.244 4.244 17 C -0.113 4.113 18 C -0.276 4.276 19 C 0.080 3.920 20 C -0.501 4.501 21 H 0.073 0.927 22 C -0.165 4.165 23 N -0.487 5.487 24 Si 0.787 3.213 25 H -0.192 1.192 26 H -0.205 1.205 27 H -0.178 1.178 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.137 0.863 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.247 0.753 43 H 0.138 0.862 44 H 0.111 0.889 45 H 0.145 0.855 46 H 0.147 0.853 47 H 0.139 0.861 48 H 0.112 0.888 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.519 6.748 -13.061 16.512 hybrid contribution -0.579 0.098 0.924 1.095 sum 6.940 6.845 -12.137 15.567 Atomic orbital electron populations 1.20959 0.92743 1.02917 1.01533 1.21869 0.95901 0.95888 1.00383 1.20840 0.99884 0.93982 1.02429 1.22612 0.99784 0.93208 1.03159 1.20770 1.00350 0.94496 0.98030 1.21728 1.01100 0.92779 0.98426 1.21001 0.80005 0.96913 0.98795 0.93373 1.22085 1.02067 0.98666 0.98278 1.45988 1.06428 1.26164 1.58524 1.21052 0.89579 0.82411 0.76460 1.90656 1.80077 1.30146 1.44776 1.20363 0.89750 0.99198 1.02300 1.19623 1.05832 0.98460 0.92712 1.20924 0.96659 0.93213 0.99255 1.20917 1.07837 1.01427 0.94171 1.20997 0.98385 0.96990 0.94896 1.21323 1.10132 0.97647 0.98487 1.17749 0.90016 0.91882 0.92340 1.19259 1.08005 1.14558 1.08282 0.92689 1.26697 1.03427 0.93158 0.93174 1.69722 1.39504 1.29018 1.10457 0.85584 0.78374 0.77664 0.79707 1.19153 1.20511 1.17822 0.93158 0.90743 0.91371 0.90540 0.91509 0.91642 0.86276 0.91770 0.93333 0.88911 0.89420 0.94912 0.90550 0.90215 0.75347 0.86210 0.88851 0.85500 0.85281 0.86057 0.88845 0.90096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.03 71.24 0.64 -2.04 16 2 C -0.14 -2.86 6.05 -16.49 -0.10 -2.96 16 3 C -0.11 -1.79 10.04 71.24 0.72 -1.08 16 4 C -0.17 -3.53 9.15 25.64 0.23 -3.30 16 5 C -0.10 -2.41 5.25 29.85 0.16 -2.25 16 6 C -0.10 -2.00 4.74 30.59 0.14 -1.85 16 7 C 0.14 3.63 2.57 44.99 0.12 3.74 16 8 H 0.05 1.66 7.58 -2.39 -0.02 1.64 16 9 C -0.15 -3.46 9.48 71.98 0.68 -2.78 16 10 N -0.72 -20.60 4.53 -442.53 -2.00 -22.61 16 11 C 0.52 20.26 7.41 87.66 0.65 20.91 16 12 O -0.58 -28.72 15.70 -3.05 -0.05 -28.77 16 13 C -0.08 -2.89 5.21 29.10 0.15 -2.73 16 14 C -0.16 -7.54 4.43 -19.41 -0.09 -7.63 16 15 C -0.08 -3.36 9.66 22.22 0.21 -3.15 16 16 C -0.22 -9.00 10.05 22.46 0.23 -8.77 16 17 C -0.09 -4.12 10.02 22.22 0.22 -3.90 16 18 C -0.26 -12.98 7.27 22.73 0.17 -12.81 16 19 C 0.08 4.36 5.02 -21.29 -0.11 4.25 16 20 C -0.47 -26.87 8.46 23.46 0.20 -26.68 16 21 H 0.05 3.40 7.18 -2.91 -0.02 3.38 16 22 C 0.05 2.65 5.44 85.26 0.46 3.12 16 23 N -0.86 -48.61 13.93 21.83 0.30 -48.31 16 24 Si 0.96 44.60 24.65 68.60 1.69 46.29 16 25 H -0.27 -12.03 6.38 99.48 0.63 -11.40 16 26 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 27 H -0.25 -11.84 7.10 99.48 0.71 -11.14 16 28 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.07 1.32 7.98 -2.39 -0.02 1.31 16 30 H 0.07 1.44 6.42 -2.39 -0.02 1.42 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 0.95 7.89 -2.38 -0.02 0.93 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.12 2.11 8.05 -2.91 -0.02 2.09 16 35 H 0.06 1.74 5.12 -2.38 -0.01 1.72 16 36 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.41 8.98 8.60 -92.71 -0.80 8.19 16 43 H 0.12 3.39 8.05 -2.38 -0.02 3.37 16 44 H 0.09 3.65 7.20 -2.39 -0.02 3.64 16 45 H 0.13 4.23 8.06 -2.91 -0.02 4.20 16 46 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 47 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 48 H 0.09 4.79 4.83 -2.91 -0.01 4.78 16 49 H 0.29 14.84 8.30 -92.71 -0.77 14.07 16 Total: -1.00 -71.31 393.33 4.69 -66.62 By element: Atomic # 1 Polarization: 36.63 SS G_CDS: 0.06 Total: 36.69 kcal Atomic # 6 Polarization: -54.60 SS G_CDS: 4.69 Total: -49.91 kcal Atomic # 7 Polarization: -69.22 SS G_CDS: -1.70 Total: -70.92 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.05 Total: -28.77 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.69 Total: 46.29 kcal Total: -71.31 4.69 -66.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117770681.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.706 kcal (2) G-P(sol) polarization free energy of solvation -71.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds