Wall clock time and date at job start Tue Mar 31 2020 11:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50704 * 119.99904 * 2 1 4 4 C 1.30993 * 119.99775 * 179.97438 * 2 1 3 5 5 C 1.50699 * 120.00109 * 354.26534 * 4 2 1 6 6 C 1.53004 * 109.47246 * 121.47713 * 5 4 2 7 7 C 1.52997 * 109.47317 * 179.97438 * 6 5 4 8 8 H 1.09008 * 109.47059 * 54.99798 * 7 6 5 9 9 C 1.52994 * 109.47031 * 174.99763 * 7 6 5 10 10 N 1.46499 * 109.47132 * 294.99795 * 7 6 5 11 11 C 1.34779 * 120.00196 * 154.99782 * 10 7 6 12 12 O 1.21280 * 119.99434 * 0.02562 * 11 10 7 13 13 C 1.50690 * 120.00418 * 180.02562 * 11 10 7 14 14 C 1.50698 * 109.47571 * 180.02562 * 13 11 10 15 15 C 1.37643 * 120.12718 * 265.00325 * 14 13 11 16 16 C 1.38609 * 120.24928 * 179.97438 * 15 14 13 17 17 C 1.38655 * 120.50098 * 0.02562 * 16 15 14 18 18 C 1.37592 * 120.24948 * 0.03215 * 17 16 15 19 19 C 1.40697 * 120.13147 * 84.72265 * 14 13 11 20 20 C 1.41393 * 120.24105 * 359.97438 * 19 14 13 21 21 H 1.08006 * 120.00188 * 334.30117 * 20 19 14 22 22 C 1.39945 * 120.00136 * 154.29897 * 20 19 14 23 23 N 1.30824 * 119.99550 * 342.79503 * 22 20 19 24 24 Si 1.86799 * 120.00376 * 162.78823 * 22 20 19 25 25 H 1.48500 * 109.47086 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.47048 * 120.00028 * 24 22 20 27 27 H 1.48495 * 109.47718 * 240.00282 * 24 22 20 28 28 H 1.09002 * 109.47293 * 244.31635 * 1 2 3 29 29 H 1.09006 * 109.47076 * 4.30805 * 1 2 3 30 30 H 1.08993 * 109.47125 * 124.30977 * 1 2 3 31 31 H 1.09000 * 109.46796 * 269.99758 * 3 2 1 32 32 H 1.09002 * 109.47328 * 30.00044 * 3 2 1 33 33 H 1.09004 * 109.47063 * 150.00173 * 3 2 1 34 34 H 1.08009 * 119.99784 * 174.26858 * 4 2 1 35 35 H 1.08996 * 109.47005 * 1.47475 * 5 4 2 36 36 H 1.09005 * 109.47114 * 241.47228 * 5 4 2 37 37 H 1.08998 * 109.46808 * 59.99911 * 6 5 4 38 38 H 1.09004 * 109.47012 * 300.00203 * 6 5 4 39 39 H 1.08996 * 109.47576 * 60.00173 * 9 7 6 40 40 H 1.09004 * 109.46881 * 180.02562 * 9 7 6 41 41 H 1.09005 * 109.47291 * 299.99682 * 9 7 6 42 42 H 0.96997 * 120.00291 * 335.00426 * 10 7 6 43 43 H 1.09006 * 109.46916 * 300.00101 * 13 11 10 44 44 H 1.09001 * 109.47227 * 60.00059 * 13 11 10 45 45 H 1.08008 * 119.87406 * 359.97438 * 15 14 13 46 46 H 1.08002 * 119.74974 * 180.02562 * 16 15 14 47 47 H 1.08010 * 119.87563 * 180.02562 * 17 16 15 48 48 H 1.08003 * 120.12733 * 179.97438 * 18 17 16 49 49 H 0.97006 * 119.99408 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1619 -1.1345 0.0005 5 6 1.4140 -2.4362 0.1315 6 6 1.7051 -3.3164 -1.0857 7 6 0.9464 -4.6383 -0.9524 8 1 -0.1146 -4.4351 -0.8067 9 6 1.1371 -5.4662 -2.2248 10 7 1.4632 -5.3842 0.1977 11 6 0.6809 -6.2865 0.8225 12 8 -0.4508 -6.4812 0.4322 13 6 1.2123 -7.0534 2.0058 14 6 0.1481 -7.9903 2.5163 15 6 -0.6724 -7.6052 3.5521 16 6 -1.6524 -8.4648 4.0233 17 6 -1.8177 -9.7204 3.4589 18 6 -1.0082 -10.1270 2.4233 19 6 -0.0145 -9.2599 1.9320 20 6 0.8183 -9.6638 0.8632 21 1 1.2740 -8.9224 0.2235 22 6 1.0522 -11.0244 0.6340 23 7 0.7962 -11.8992 1.5724 24 14 1.7297 -11.5915 -1.0119 25 1 1.9329 -10.4152 -1.8953 26 1 3.0276 -12.2820 -0.8015 27 1 0.7681 -12.5279 -1.6471 28 1 -0.3634 -0.4454 0.9261 29 1 -0.3633 1.0248 -0.0772 30 1 -0.3633 -0.5792 -0.8488 31 1 2.4422 1.6197 -1.0277 32 1 1.6714 2.0648 0.5138 33 1 3.2129 1.1748 0.5138 34 1 3.2380 -1.1368 -0.0929 35 1 0.3440 -2.2364 0.1879 36 1 1.7359 -2.9506 1.0371 37 1 2.7752 -3.5161 -1.1420 38 1 1.3834 -2.8020 -1.9913 39 1 2.1979 -5.6694 -2.3705 40 1 0.5961 -6.4078 -2.1300 41 1 0.7524 -4.9112 -3.0805 42 1 2.3684 -5.2287 0.5096 43 1 2.0873 -7.6285 1.7028 44 1 1.4916 -6.3556 2.7953 45 1 -0.5522 -6.6295 3.9995 46 1 -2.2920 -8.1542 4.8362 47 1 -2.5849 -10.3820 3.8337 48 1 -1.1384 -11.1056 1.9854 49 1 0.9580 -12.8424 1.4134 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117770682.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:11 Heat of formation + Delta-G solvation = -35.683344 kcal Electronic energy + Delta-G solvation = -25969.221172 eV Core-core repulsion = 22473.898679 eV Total energy + Delta-G solvation = -3495.322493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -39.39772 -37.73341 -37.13157 -35.51891 -33.57392 -32.21662 -31.51591 -30.05493 -29.38337 -28.04262 -26.69530 -26.54776 -24.93630 -22.87437 -21.26052 -20.86867 -20.21059 -19.25314 -18.04363 -17.12629 -16.39319 -16.00399 -15.37276 -15.26329 -14.63961 -14.44936 -14.38464 -14.34859 -13.79775 -13.48128 -13.36336 -13.11773 -12.91952 -12.67789 -12.60157 -12.52605 -12.12934 -12.01706 -11.88913 -11.64760 -11.53487 -11.49922 -11.17556 -11.09172 -10.94260 -10.93176 -10.83106 -10.64810 -10.57144 -10.34657 -9.42965 -9.32114 -9.11594 -9.04199 -8.89251 -8.56117 -7.25999 -7.23870 -6.69747 -4.28735 1.98012 2.81995 3.02786 3.10104 3.15482 3.30776 3.44224 3.76908 3.97300 4.49549 4.70554 4.72567 4.90888 4.95682 5.08589 5.21032 5.27529 5.37133 5.47449 5.53027 5.54307 5.61414 5.64251 5.69391 5.72861 5.78678 5.84441 5.87866 5.97038 6.05850 6.10042 6.15413 6.32109 6.34438 6.43698 6.49436 6.50740 6.56206 6.74993 6.85743 6.96428 7.13651 7.34871 7.47670 7.69805 7.95995 8.05143 8.14340 8.18504 8.36919 8.70339 8.96652 8.98194 9.07127 10.24569 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015176 B = 0.003147 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.565028 B = 8896.345812 C =10242.641827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.140 4.140 3 C -0.116 4.116 4 C -0.161 4.161 5 C -0.095 4.095 6 C -0.118 4.118 7 C 0.142 3.858 8 H 0.083 0.917 9 C -0.164 4.164 10 N -0.740 5.740 11 C 0.515 3.485 12 O -0.521 6.521 13 C -0.072 4.072 14 C -0.179 4.179 15 C -0.082 4.082 16 C -0.240 4.240 17 C -0.107 4.107 18 C -0.160 4.160 19 C 0.128 3.872 20 C -0.454 4.454 21 H 0.075 0.925 22 C 0.076 3.924 23 N -0.795 5.795 24 Si 0.901 3.099 25 H -0.261 1.261 26 H -0.275 1.275 27 H -0.272 1.272 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.394 0.606 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.116 0.884 49 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.423 17.969 -4.606 19.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.140 4.140 3 C -0.172 4.172 4 C -0.179 4.179 5 C -0.132 4.132 6 C -0.156 4.156 7 C 0.038 3.962 8 H 0.102 0.898 9 C -0.223 4.223 10 N -0.394 5.394 11 C 0.303 3.697 12 O -0.395 6.395 13 C -0.112 4.112 14 C -0.181 4.181 15 C -0.100 4.100 16 C -0.260 4.260 17 C -0.126 4.126 18 C -0.180 4.180 19 C 0.126 3.874 20 C -0.484 4.484 21 H 0.093 0.907 22 C -0.141 4.141 23 N -0.421 5.421 24 Si 0.726 3.274 25 H -0.185 1.185 26 H -0.201 1.201 27 H -0.198 1.198 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.227 0.773 43 H 0.113 0.887 44 H 0.092 0.908 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.134 0.866 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.589 17.564 -4.844 18.789 hybrid contribution 0.821 -0.317 -0.608 1.070 sum 5.410 17.246 -5.453 18.880 Atomic orbital electron populations 1.20846 0.92426 1.01980 1.02243 1.21620 0.95844 0.95001 1.01542 1.20831 0.99598 0.95053 1.01764 1.22671 0.99362 0.93894 1.01977 1.20773 1.00438 0.93414 0.98611 1.21816 1.00659 0.94596 0.98551 1.20846 0.99232 0.90141 0.86030 0.89843 1.22183 1.01881 1.01310 0.96881 1.46230 1.17340 1.42854 1.33005 1.21186 0.85680 0.78576 0.84277 1.90671 1.19098 1.64067 1.65691 1.20270 0.99788 0.96826 0.94274 1.19058 1.01230 0.97107 1.00685 1.20296 0.95909 0.96833 0.96952 1.20296 1.03930 0.96513 1.05221 1.20666 0.98802 0.95428 0.97701 1.21282 0.96637 1.00902 0.99152 1.17340 0.89984 0.89811 0.90268 1.19491 1.25725 0.91549 1.11651 0.90738 1.25880 0.93988 0.96859 0.97336 1.69841 1.37027 1.03339 1.31868 0.86373 0.78842 0.79429 0.82750 1.18505 1.20090 1.19754 0.91494 0.92393 0.91483 0.91824 0.91988 0.92069 0.87565 0.91014 0.90708 0.91520 0.90849 0.92747 0.91583 0.92347 0.77306 0.88706 0.90777 0.89831 0.89731 0.89644 0.86608 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 8.53 36.01 0.31 -0.67 16 2 C -0.14 -1.21 6.05 -101.06 -0.61 -1.82 16 3 C -0.12 -0.81 9.96 36.01 0.36 -0.45 16 4 C -0.16 -1.44 9.10 -36.02 -0.33 -1.77 16 5 C -0.10 -0.93 5.36 -27.88 -0.15 -1.07 16 6 C -0.12 -1.14 4.74 -26.73 -0.13 -1.26 16 7 C 0.14 1.85 2.57 -67.94 -0.17 1.67 16 8 H 0.08 1.26 7.58 -51.92 -0.39 0.87 16 9 C -0.16 -2.18 9.48 37.15 0.35 -1.83 16 10 N -0.74 -10.58 4.53 -53.81 -0.24 -10.82 16 11 C 0.52 9.97 7.41 -10.99 -0.08 9.89 16 12 O -0.52 -12.47 15.70 5.56 0.09 -12.38 16 13 C -0.07 -1.41 5.18 -29.04 -0.15 -1.56 16 14 C -0.18 -4.36 4.43 -103.91 -0.46 -4.82 16 15 C -0.08 -1.92 9.66 -39.66 -0.38 -2.30 16 16 C -0.24 -5.70 10.05 -39.29 -0.39 -6.09 16 17 C -0.11 -2.67 10.02 -39.66 -0.40 -3.07 16 18 C -0.16 -4.36 8.69 -38.88 -0.34 -4.70 16 19 C 0.13 3.48 5.56 -106.83 -0.59 2.88 16 20 C -0.45 -12.07 8.15 -37.74 -0.31 -12.38 16 21 H 0.07 1.93 6.66 -52.48 -0.35 1.58 16 22 C 0.08 1.94 5.15 -17.34 -0.09 1.85 16 23 N -0.80 -20.75 10.98 55.55 0.61 -20.14 16 24 Si 0.90 19.09 29.59 -169.99 -5.03 14.06 16 25 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 26 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 27 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 28 H 0.07 0.58 7.75 -51.93 -0.40 0.17 16 29 H 0.06 0.41 7.97 -51.93 -0.41 0.00 16 30 H 0.07 0.56 7.77 -51.93 -0.40 0.15 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 33 H 0.06 0.40 8.06 -51.93 -0.42 -0.02 16 34 H 0.11 0.87 8.05 -52.48 -0.42 0.45 16 35 H 0.07 0.75 5.80 -51.93 -0.30 0.45 16 36 H 0.07 0.77 7.75 -51.93 -0.40 0.36 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.39 4.48 8.60 -40.82 -0.35 4.13 16 43 H 0.09 1.84 7.07 -51.93 -0.37 1.48 16 44 H 0.07 1.22 8.05 -51.93 -0.42 0.81 16 45 H 0.08 1.73 8.06 -52.48 -0.42 1.30 16 46 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 47 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 48 H 0.12 3.23 6.21 -52.48 -0.33 2.90 16 49 H 0.28 6.61 8.30 -40.82 -0.34 6.28 16 LS Contribution 398.94 15.07 6.01 6.01 Total: -1.00 -30.77 398.94 -10.46 -41.24 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -8.33 Total: 9.52 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: -3.57 Total: -27.49 kcal Atomic # 7 Polarization: -31.33 SS G_CDS: 0.37 Total: -30.96 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.09 Total: -12.38 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.77 -10.46 -41.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117770682.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.554 kcal (2) G-P(sol) polarization free energy of solvation -30.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds