Wall clock time and date at job start Tue Mar 31 2020 11:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50704 * 119.99904 * 2 1 4 4 C 1.30993 * 119.99775 * 179.97438 * 2 1 3 5 5 C 1.50699 * 120.00109 * 354.26534 * 4 2 1 6 6 C 1.53004 * 109.47246 * 121.47713 * 5 4 2 7 7 C 1.52997 * 109.47317 * 179.97438 * 6 5 4 8 8 H 1.09008 * 109.47059 * 54.99798 * 7 6 5 9 9 C 1.52994 * 109.47031 * 174.99763 * 7 6 5 10 10 N 1.46499 * 109.47132 * 294.99795 * 7 6 5 11 11 C 1.34779 * 120.00196 * 154.99782 * 10 7 6 12 12 O 1.21280 * 119.99434 * 0.02562 * 11 10 7 13 13 C 1.50690 * 120.00418 * 180.02562 * 11 10 7 14 14 C 1.50698 * 109.47571 * 180.02562 * 13 11 10 15 15 C 1.37643 * 120.12718 * 265.00325 * 14 13 11 16 16 C 1.38609 * 120.24928 * 179.97438 * 15 14 13 17 17 C 1.38655 * 120.50098 * 0.02562 * 16 15 14 18 18 C 1.37592 * 120.24948 * 0.03215 * 17 16 15 19 19 C 1.40697 * 120.13147 * 84.72265 * 14 13 11 20 20 C 1.41393 * 120.24105 * 359.97438 * 19 14 13 21 21 H 1.08006 * 120.00188 * 334.30117 * 20 19 14 22 22 C 1.39945 * 120.00136 * 154.29897 * 20 19 14 23 23 N 1.30824 * 119.99550 * 342.79503 * 22 20 19 24 24 Si 1.86799 * 120.00376 * 162.78823 * 22 20 19 25 25 H 1.48500 * 109.47086 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.47048 * 120.00028 * 24 22 20 27 27 H 1.48495 * 109.47718 * 240.00282 * 24 22 20 28 28 H 1.09002 * 109.47293 * 244.31635 * 1 2 3 29 29 H 1.09006 * 109.47076 * 4.30805 * 1 2 3 30 30 H 1.08993 * 109.47125 * 124.30977 * 1 2 3 31 31 H 1.09000 * 109.46796 * 269.99758 * 3 2 1 32 32 H 1.09002 * 109.47328 * 30.00044 * 3 2 1 33 33 H 1.09004 * 109.47063 * 150.00173 * 3 2 1 34 34 H 1.08009 * 119.99784 * 174.26858 * 4 2 1 35 35 H 1.08996 * 109.47005 * 1.47475 * 5 4 2 36 36 H 1.09005 * 109.47114 * 241.47228 * 5 4 2 37 37 H 1.08998 * 109.46808 * 59.99911 * 6 5 4 38 38 H 1.09004 * 109.47012 * 300.00203 * 6 5 4 39 39 H 1.08996 * 109.47576 * 60.00173 * 9 7 6 40 40 H 1.09004 * 109.46881 * 180.02562 * 9 7 6 41 41 H 1.09005 * 109.47291 * 299.99682 * 9 7 6 42 42 H 0.96997 * 120.00291 * 335.00426 * 10 7 6 43 43 H 1.09006 * 109.46916 * 300.00101 * 13 11 10 44 44 H 1.09001 * 109.47227 * 60.00059 * 13 11 10 45 45 H 1.08008 * 119.87406 * 359.97438 * 15 14 13 46 46 H 1.08002 * 119.74974 * 180.02562 * 16 15 14 47 47 H 1.08010 * 119.87563 * 180.02562 * 17 16 15 48 48 H 1.08003 * 120.12733 * 179.97438 * 18 17 16 49 49 H 0.97006 * 119.99408 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1619 -1.1345 0.0005 5 6 1.4140 -2.4362 0.1315 6 6 1.7051 -3.3164 -1.0857 7 6 0.9464 -4.6383 -0.9524 8 1 -0.1146 -4.4351 -0.8067 9 6 1.1371 -5.4662 -2.2248 10 7 1.4632 -5.3842 0.1977 11 6 0.6809 -6.2865 0.8225 12 8 -0.4508 -6.4812 0.4322 13 6 1.2123 -7.0534 2.0058 14 6 0.1481 -7.9903 2.5163 15 6 -0.6724 -7.6052 3.5521 16 6 -1.6524 -8.4648 4.0233 17 6 -1.8177 -9.7204 3.4589 18 6 -1.0082 -10.1270 2.4233 19 6 -0.0145 -9.2599 1.9320 20 6 0.8183 -9.6638 0.8632 21 1 1.2740 -8.9224 0.2235 22 6 1.0522 -11.0244 0.6340 23 7 0.7962 -11.8992 1.5724 24 14 1.7297 -11.5915 -1.0119 25 1 1.9329 -10.4152 -1.8953 26 1 3.0276 -12.2820 -0.8015 27 1 0.7681 -12.5279 -1.6471 28 1 -0.3634 -0.4454 0.9261 29 1 -0.3633 1.0248 -0.0772 30 1 -0.3633 -0.5792 -0.8488 31 1 2.4422 1.6197 -1.0277 32 1 1.6714 2.0648 0.5138 33 1 3.2129 1.1748 0.5138 34 1 3.2380 -1.1368 -0.0929 35 1 0.3440 -2.2364 0.1879 36 1 1.7359 -2.9506 1.0371 37 1 2.7752 -3.5161 -1.1420 38 1 1.3834 -2.8020 -1.9913 39 1 2.1979 -5.6694 -2.3705 40 1 0.5961 -6.4078 -2.1300 41 1 0.7524 -4.9112 -3.0805 42 1 2.3684 -5.2287 0.5096 43 1 2.0873 -7.6285 1.7028 44 1 1.4916 -6.3556 2.7953 45 1 -0.5522 -6.6295 3.9995 46 1 -2.2920 -8.1542 4.8362 47 1 -2.5849 -10.3820 3.8337 48 1 -1.1384 -11.1056 1.9854 49 1 0.9580 -12.8424 1.4134 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117770682.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:05 Heat of formation + Delta-G solvation = -50.750109 kcal Electronic energy + Delta-G solvation = -25969.874516 eV Core-core repulsion = 22473.898679 eV Total energy + Delta-G solvation = -3495.975837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 3.99 seconds Orbital eigenvalues (eV) -40.86850 -39.27769 -38.22437 -36.63755 -35.49352 -33.66261 -32.85460 -31.37205 -31.10536 -28.64377 -28.37219 -27.36816 -26.82189 -23.79793 -22.82694 -22.50452 -21.51483 -20.93289 -19.06252 -18.70595 -17.83948 -17.33812 -17.06379 -16.27818 -16.21128 -15.87341 -15.45775 -15.27703 -15.15599 -14.91755 -14.61924 -14.50608 -14.37086 -13.85581 -13.66010 -13.52533 -13.37617 -13.25118 -13.04095 -12.89468 -12.74393 -12.72262 -12.63920 -12.57629 -12.47877 -12.32618 -12.11552 -11.94595 -11.67791 -11.43049 -11.30810 -11.19752 -11.01780 -10.65121 -9.97485 -9.45596 -9.22188 -9.14737 -8.59592 -6.27702 0.99774 1.14326 1.32464 1.35195 1.48547 1.52147 1.92018 2.19757 2.46202 2.79200 3.69452 3.79128 4.06401 4.12373 4.15558 4.21865 4.23063 4.42101 4.46660 4.50670 4.58651 4.63292 4.67385 4.71197 4.72480 4.75238 4.82666 4.83558 4.88707 4.94539 4.97719 5.07068 5.11122 5.14268 5.18650 5.21343 5.25567 5.30979 5.37645 5.40947 5.56119 5.73798 5.79024 5.85546 6.05175 6.10563 6.18286 6.22412 6.43247 6.72502 6.80438 7.00548 7.12732 7.54774 8.37199 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015176 B = 0.003147 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.565028 B = 8896.345812 C =10242.641827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.145 4.145 3 C -0.116 4.116 4 C -0.168 4.168 5 C -0.093 4.093 6 C -0.104 4.104 7 C 0.142 3.858 8 H 0.059 0.941 9 C -0.161 4.161 10 N -0.718 5.718 11 C 0.517 3.483 12 O -0.575 6.575 13 C -0.071 4.071 14 C -0.185 4.185 15 C -0.092 4.092 16 C -0.244 4.244 17 C -0.118 4.118 18 C -0.196 4.196 19 C 0.095 3.905 20 C -0.479 4.479 21 H 0.071 0.929 22 C 0.035 3.965 23 N -0.826 5.826 24 Si 0.971 3.029 25 H -0.262 1.262 26 H -0.260 1.260 27 H -0.270 1.270 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.023 0.977 41 H 0.080 0.920 42 H 0.412 0.588 43 H 0.095 0.905 44 H 0.111 0.889 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.104 0.896 48 H 0.096 0.904 49 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.165 20.189 -5.086 22.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.145 4.145 3 C -0.172 4.172 4 C -0.186 4.186 5 C -0.130 4.130 6 C -0.142 4.142 7 C 0.037 3.963 8 H 0.077 0.923 9 C -0.219 4.219 10 N -0.372 5.372 11 C 0.305 3.695 12 O -0.454 6.454 13 C -0.111 4.111 14 C -0.187 4.187 15 C -0.110 4.110 16 C -0.263 4.263 17 C -0.136 4.136 18 C -0.215 4.215 19 C 0.093 3.907 20 C -0.509 4.509 21 H 0.089 0.911 22 C -0.179 4.179 23 N -0.452 5.452 24 Si 0.792 3.208 25 H -0.186 1.186 26 H -0.184 1.184 27 H -0.195 1.195 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.135 0.865 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.099 0.901 42 H 0.248 0.752 43 H 0.113 0.887 44 H 0.129 0.871 45 H 0.134 0.866 46 H 0.133 0.867 47 H 0.123 0.877 48 H 0.114 0.886 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.379 19.817 -5.313 21.486 hybrid contribution 0.227 -0.910 -0.386 1.014 sum 6.607 18.907 -5.699 20.824 Atomic orbital electron populations 1.20868 0.92583 1.02536 1.01747 1.21860 0.96018 0.95782 1.00839 1.20859 0.99682 0.94300 1.02407 1.22681 0.99836 0.93367 1.02702 1.20716 0.99934 0.94007 0.98362 1.21718 1.01091 0.92286 0.99095 1.20955 0.98541 0.91632 0.85137 0.92294 1.22149 1.02292 0.99581 0.97872 1.46007 1.17554 1.41105 1.32525 1.21058 0.85209 0.78966 0.84233 1.90655 1.21478 1.66058 1.67192 1.20289 0.98252 0.96887 0.95628 1.19554 1.01993 0.96891 1.00290 1.20736 0.95426 0.98169 0.96692 1.20710 1.04147 0.95884 1.05529 1.20939 0.98899 0.96556 0.97230 1.21296 0.98428 1.00776 1.01013 1.17747 0.90480 0.91310 0.91198 1.19613 1.26684 0.92346 1.12226 0.91120 1.26674 0.94111 0.96554 1.00575 1.69897 1.37843 1.03880 1.33617 0.85332 0.78666 0.78760 0.78023 1.18616 1.18430 1.19517 0.92207 0.91367 0.91784 0.91073 0.91436 0.91589 0.86471 0.92160 0.91228 0.89666 0.89597 0.91251 0.95756 0.90110 0.75189 0.88663 0.87108 0.86621 0.86746 0.87747 0.88620 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 8.53 71.24 0.61 -1.22 16 2 C -0.14 -2.20 6.05 -16.48 -0.10 -2.30 16 3 C -0.12 -1.34 9.96 71.24 0.71 -0.64 16 4 C -0.17 -2.60 9.10 25.65 0.23 -2.36 16 5 C -0.09 -1.63 5.36 29.85 0.16 -1.47 16 6 C -0.10 -1.73 4.74 30.59 0.14 -1.59 16 7 C 0.14 3.53 2.57 44.99 0.12 3.64 16 8 H 0.06 1.79 7.58 -2.38 -0.02 1.78 16 9 C -0.16 -4.11 9.48 71.98 0.68 -3.43 16 10 N -0.72 -19.61 4.53 -442.55 -2.00 -21.62 16 11 C 0.52 19.92 7.41 87.65 0.65 20.57 16 12 O -0.58 -28.24 15.70 -3.03 -0.05 -28.29 16 13 C -0.07 -2.74 5.18 29.10 0.15 -2.59 16 14 C -0.19 -9.07 4.43 -19.40 -0.09 -9.16 16 15 C -0.09 -4.23 9.66 22.22 0.21 -4.02 16 16 C -0.24 -11.34 10.05 22.46 0.23 -11.12 16 17 C -0.12 -5.95 10.02 22.22 0.22 -5.73 16 18 C -0.20 -11.06 8.69 22.73 0.20 -10.86 16 19 C 0.09 5.30 5.56 -21.29 -0.12 5.18 16 20 C -0.48 -26.27 8.15 23.46 0.19 -26.08 16 21 H 0.07 3.79 6.66 -2.91 -0.02 3.77 16 22 C 0.04 1.83 5.15 85.26 0.44 2.27 16 23 N -0.83 -44.47 10.98 21.83 0.24 -44.23 16 24 Si 0.97 39.79 29.59 68.60 2.03 41.82 16 25 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 26 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 27 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 28 H 0.06 0.98 7.75 -2.39 -0.02 0.96 16 29 H 0.07 0.87 7.97 -2.38 -0.02 0.85 16 30 H 0.06 1.00 7.77 -2.39 -0.02 0.98 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.70 8.08 -2.39 -0.02 0.68 16 33 H 0.07 0.70 8.06 -2.38 -0.02 0.68 16 34 H 0.12 1.55 8.05 -2.91 -0.02 1.53 16 35 H 0.06 1.19 5.80 -2.39 -0.01 1.18 16 36 H 0.07 1.28 7.75 -2.38 -0.02 1.26 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.41 8.35 8.60 -92.71 -0.80 7.55 16 43 H 0.10 3.66 7.07 -2.38 -0.02 3.64 16 44 H 0.11 3.38 8.05 -2.39 -0.02 3.36 16 45 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 46 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 47 H 0.10 4.69 8.06 -2.91 -0.02 4.66 16 48 H 0.10 5.65 6.21 -2.91 -0.02 5.63 16 49 H 0.29 13.91 8.30 -92.70 -0.77 13.14 16 Total: -1.00 -69.79 398.94 4.98 -64.81 By element: Atomic # 1 Polarization: 38.27 SS G_CDS: 0.13 Total: 38.40 kcal Atomic # 6 Polarization: -55.53 SS G_CDS: 4.64 Total: -50.89 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: -1.76 Total: -65.85 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.05 Total: -28.29 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -69.79 4.98 -64.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117770682.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.059 kcal (2) G-P(sol) polarization free energy of solvation -69.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.99 seconds