Wall clock time and date at job start Tue Mar 31 2020 11:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47269 * 2 1 4 4 C 1.53002 * 109.47118 * 239.99435 * 2 1 3 5 5 C 1.52995 * 109.47049 * 175.00130 * 4 2 1 6 6 C 1.50696 * 109.47245 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99824 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00303 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00016 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00125 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47125 * 89.99518 * 10 8 6 12 12 H 1.48499 * 109.47059 * 209.99811 * 10 8 6 13 13 H 1.48499 * 109.47172 * 329.99559 * 10 8 6 14 14 N 1.46902 * 109.46993 * 119.99957 * 2 1 3 15 15 C 1.46852 * 110.99991 * 294.99903 * 14 2 1 16 16 C 1.53036 * 109.52557 * 185.84301 * 15 14 2 17 17 C 1.53120 * 109.27596 * 300.81840 * 16 15 14 18 18 C 1.50703 * 109.52428 * 177.55881 * 17 16 15 19 19 O 1.21250 * 119.99733 * 335.00236 * 18 17 16 20 20 C 1.47164 * 119.99851 * 155.00131 * 18 17 16 21 21 C 1.39855 * 120.16680 * 180.02562 * 20 18 17 22 22 C 1.37890 * 119.82316 * 179.97438 * 21 20 18 23 23 C 1.38405 * 120.17220 * 0.02562 * 22 21 20 24 24 C 1.38408 * 120.34793 * 359.95712 * 23 22 21 25 25 C 1.37888 * 120.17328 * 0.04487 * 24 23 22 26 26 C 1.53127 * 109.16016 * 57.65357 * 17 16 15 27 27 C 1.46845 * 111.00199 * 59.20819 * 14 2 1 28 28 H 1.09002 * 109.47240 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46980 * 300.00085 * 1 2 3 30 30 H 1.08993 * 109.47098 * 60.00252 * 1 2 3 31 31 H 1.08997 * 109.47345 * 295.00633 * 4 2 1 32 32 H 1.08998 * 109.46574 * 55.00370 * 4 2 1 33 33 H 1.09000 * 109.47182 * 300.00006 * 5 4 2 34 34 H 1.08999 * 109.47431 * 59.99886 * 5 4 2 35 35 H 0.96998 * 120.00017 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.46206 * 65.82190 * 15 14 2 37 37 H 1.09009 * 109.46009 * 305.85971 * 15 14 2 38 38 H 1.08996 * 109.50646 * 180.88144 * 16 15 14 39 39 H 1.08997 * 109.50141 * 60.75825 * 16 15 14 40 40 H 1.09003 * 109.52586 * 297.68961 * 17 16 15 41 41 H 1.07999 * 120.09085 * 359.69867 * 21 20 18 42 42 H 1.08000 * 119.91186 * 180.02562 * 22 21 20 43 43 H 1.07998 * 119.82795 * 179.97438 * 23 22 21 44 44 H 1.07996 * 119.91453 * 180.02562 * 24 23 22 45 45 H 1.07996 * 120.08508 * 179.97438 * 25 24 23 46 46 H 1.08997 * 109.50124 * 62.28606 * 26 17 16 47 47 H 1.09001 * 109.49827 * 182.40278 * 26 17 16 48 48 H 1.08997 * 109.46189 * 294.17565 * 27 14 2 49 49 H 1.08994 * 109.46350 * 54.14158 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 6 4.0672 -1.3234 -2.5443 7 1 3.3687 -1.8040 -3.2134 8 6 5.4184 -1.3604 -2.8156 9 7 6.2690 -0.7757 -2.0006 10 14 6.0411 -2.2411 -4.3408 11 1 6.0915 -1.2869 -5.4775 12 1 7.4022 -2.7758 -4.0826 13 1 5.1246 -3.3608 -4.6747 14 7 2.0197 -0.6925 1.1995 15 6 1.6489 0.0389 2.4177 16 6 2.2965 -0.6292 3.6326 17 6 1.8222 -2.0823 3.7230 18 6 2.5028 -2.7631 4.8826 19 8 3.5730 -2.3558 5.2813 20 6 1.8685 -3.9220 5.5308 21 6 2.4967 -4.5561 6.6075 22 6 1.8957 -5.6411 7.2099 23 6 0.6743 -6.1032 6.7514 24 6 0.0461 -5.4808 5.6866 25 6 0.6343 -4.3948 5.0736 26 6 2.1776 -2.8088 2.4228 27 6 1.5335 -2.0774 1.2429 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.7516 -1.7716 -1.2055 32 1 1.6054 -0.2619 -2.1369 33 1 3.8532 0.4368 -1.3573 34 1 3.9995 -1.0728 -0.4259 35 1 7.2196 -0.8014 -2.1917 36 1 0.5649 0.0281 2.5320 37 1 1.9956 1.0696 2.3422 38 1 2.0084 -0.0954 4.5382 39 1 3.3810 -0.6064 3.5254 40 1 0.7424 -2.1046 3.8703 41 1 3.4521 -4.1997 6.9632 42 1 2.3794 -6.1315 8.0417 43 1 0.2088 -6.9537 7.2271 44 1 -0.9070 -5.8470 5.3349 45 1 0.1430 -3.9105 4.2426 46 1 3.2602 -2.8203 2.2966 47 1 1.8046 -3.8322 2.4642 48 1 0.4501 -2.0784 1.3628 49 1 1.7963 -2.5840 0.3143 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172493994.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:25 Heat of formation + Delta-G solvation = -24.976728 kcal Electronic energy + Delta-G solvation = -26410.399878 eV Core-core repulsion = 22915.541659 eV Total energy + Delta-G solvation = -3494.858219 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.55703 -39.08929 -38.16893 -35.16667 -33.02046 -31.89843 -31.26158 -30.76945 -30.38852 -28.88198 -25.81386 -25.03765 -23.54348 -23.05230 -22.68889 -21.39863 -20.40115 -19.43879 -18.78625 -17.57169 -16.33752 -16.07822 -15.88526 -15.52616 -14.98302 -14.71381 -14.58569 -14.41168 -14.33419 -13.88834 -13.80932 -13.60244 -13.39120 -12.90850 -12.67182 -12.50151 -12.29802 -12.00610 -11.84267 -11.80686 -11.71438 -11.41303 -11.29856 -11.07881 -10.85519 -10.76992 -10.49558 -10.45429 -10.41153 -10.03456 -9.58237 -9.47786 -9.31419 -9.25817 -9.17316 -8.86031 -8.21586 -7.73418 -5.86242 -3.88000 0.43162 1.05663 2.27119 3.38156 3.44496 3.47278 3.53375 3.81373 4.24919 4.49287 4.55386 4.61215 4.67873 4.75653 4.88898 4.96724 5.09042 5.14488 5.29536 5.35295 5.45503 5.48650 5.48955 5.51384 5.55255 5.63059 5.66504 5.71495 5.77084 5.82746 5.88235 6.01519 6.05567 6.07481 6.11152 6.19597 6.28437 6.31058 6.35078 6.37059 6.52507 6.56468 6.69207 6.89668 7.29854 7.44856 7.57624 7.61654 7.86902 8.08891 8.24550 8.58553 9.21168 9.74691 11.24564 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014173 B = 0.003011 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.176496 B = 9296.048998 C =10076.361800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.082 3.918 3 H 0.078 0.922 4 C -0.104 4.104 5 C 0.030 3.970 6 C -0.520 4.520 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.892 5.892 10 Si 0.886 3.114 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.275 1.275 14 N -0.518 5.518 15 C 0.057 3.943 16 C -0.104 4.104 17 C -0.129 4.129 18 C 0.400 3.600 19 O -0.445 6.445 20 C -0.164 4.164 21 C -0.064 4.064 22 C -0.134 4.134 23 C -0.093 4.093 24 C -0.134 4.134 25 C -0.072 4.072 26 C -0.103 4.103 27 C 0.056 3.944 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.009 0.991 34 H 0.032 0.968 35 H 0.258 0.742 36 H 0.029 0.971 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.133 0.867 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.133 0.867 46 H 0.082 0.918 47 H 0.068 0.932 48 H 0.029 0.971 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.675 -6.914 18.057 24.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.026 4.026 3 H 0.096 0.904 4 C -0.142 4.142 5 C -0.007 4.007 6 C -0.558 4.558 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.532 5.532 10 Si 0.714 3.286 11 H -0.209 1.209 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.241 5.241 15 C -0.071 4.071 16 C -0.141 4.141 17 C -0.148 4.148 18 C 0.277 3.723 19 O -0.319 6.319 20 C -0.165 4.165 21 C -0.082 4.082 22 C -0.152 4.152 23 C -0.111 4.111 24 C -0.152 4.152 25 C -0.090 4.090 26 C -0.141 4.141 27 C -0.072 4.072 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.027 0.973 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.047 0.953 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.151 0.849 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.146 0.854 45 H 0.151 0.849 46 H 0.100 0.900 47 H 0.086 0.914 48 H 0.047 0.953 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.391 -6.671 18.268 24.194 hybrid contribution -0.577 -0.545 -0.800 1.127 sum -14.969 -7.216 17.468 24.110 Atomic orbital electron populations 1.22508 0.98986 1.01538 1.01330 1.21864 0.90967 0.98717 0.91060 0.90397 1.21762 1.00886 0.98272 0.93259 1.18996 0.88011 0.96756 0.96981 1.21326 0.91818 1.34205 1.08474 0.93177 1.24997 0.97167 0.95792 0.96429 1.69979 1.02182 1.44274 1.36758 0.86702 0.78159 0.79987 0.83752 1.20858 1.21339 1.20041 1.62030 1.59436 1.01406 1.01269 1.22049 0.96932 0.98090 0.90043 1.21501 1.02943 0.92490 0.97210 1.21709 1.00912 0.97351 0.94806 1.22566 0.85086 0.81831 0.82797 1.90520 1.20279 1.61167 1.59911 1.20645 0.97132 0.99524 0.99228 1.21482 0.99334 0.93930 0.93480 1.21170 0.96060 0.97201 1.00778 1.21427 0.94916 0.98880 0.95856 1.21171 1.00595 0.96552 0.96874 1.21546 0.93760 0.95415 0.98311 1.21544 1.03250 0.97742 0.91594 1.22104 0.95931 0.90119 0.99064 0.92759 0.93432 0.92345 0.93274 0.93322 0.97261 0.94987 0.93217 0.95339 0.90670 0.91877 0.89634 0.89246 0.84913 0.85466 0.85671 0.85391 0.84874 0.89958 0.91382 0.95289 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 8.50 37.16 0.32 -2.16 16 2 C 0.08 1.37 2.35 -67.71 -0.16 1.21 16 3 H 0.08 1.37 8.08 -51.93 -0.42 0.95 16 4 C -0.10 -2.12 4.44 -26.73 -0.12 -2.23 16 5 C 0.03 0.77 4.86 -27.89 -0.14 0.64 16 6 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 7 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.57 13.29 55.43 0.74 -26.84 16 10 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 N -0.52 -8.39 4.10 -226.69 -0.93 -9.32 16 15 C 0.06 0.77 5.02 -3.83 -0.02 0.75 16 16 C -0.10 -1.37 4.96 -26.65 -0.13 -1.51 16 17 C -0.13 -1.53 1.89 -91.64 -0.17 -1.70 16 18 C 0.40 5.17 6.23 -30.69 -0.19 4.98 16 19 O -0.44 -7.14 16.04 5.58 0.09 -7.05 16 20 C -0.16 -1.80 5.87 -105.07 -0.62 -2.41 16 21 C -0.06 -0.66 9.60 -39.10 -0.38 -1.04 16 22 C -0.13 -1.09 10.03 -39.65 -0.40 -1.49 16 23 C -0.09 -0.67 10.04 -39.46 -0.40 -1.06 16 24 C -0.13 -1.00 10.03 -39.65 -0.40 -1.40 16 25 C -0.07 -0.63 9.37 -39.11 -0.37 -1.00 16 26 C -0.10 -1.37 5.36 -26.65 -0.14 -1.51 16 27 C 0.06 0.80 4.64 -3.84 -0.02 0.79 16 28 H 0.05 0.70 6.52 -51.93 -0.34 0.36 16 29 H 0.05 0.57 6.65 -51.93 -0.35 0.23 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.98 6.05 -51.93 -0.31 0.66 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.03 0.90 7.75 -51.93 -0.40 0.50 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 36 H 0.03 0.35 6.73 -51.93 -0.35 0.00 16 37 H 0.07 1.03 8.08 -51.92 -0.42 0.61 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 1.37 7.79 -51.93 -0.40 0.97 16 40 H 0.09 0.86 6.74 -51.93 -0.35 0.51 16 41 H 0.13 1.38 7.65 -52.49 -0.40 0.98 16 42 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 44 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.13 0.97 6.47 -52.49 -0.34 0.63 16 46 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 47 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.03 0.37 6.62 -51.93 -0.34 0.02 16 49 H 0.09 1.50 5.93 -51.93 -0.31 1.19 16 LS Contribution 382.18 15.07 5.76 5.76 Total: -1.00 -32.77 382.18 -11.18 -43.95 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -8.08 Total: -0.75 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -3.73 Total: -22.84 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: -0.19 Total: -36.16 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: 0.09 Total: -7.05 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.77 -11.18 -43.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493994.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.972 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds