Wall clock time and date at job start Tue Mar 31 2020 11:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47269 * 2 1 4 4 C 1.53002 * 109.47118 * 239.99435 * 2 1 3 5 5 C 1.52995 * 109.47049 * 175.00130 * 4 2 1 6 6 C 1.50696 * 109.47245 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99824 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00303 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00016 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00125 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47125 * 89.99518 * 10 8 6 12 12 H 1.48499 * 109.47059 * 209.99811 * 10 8 6 13 13 H 1.48499 * 109.47172 * 329.99559 * 10 8 6 14 14 N 1.46902 * 109.46993 * 119.99957 * 2 1 3 15 15 C 1.46852 * 110.99991 * 294.99903 * 14 2 1 16 16 C 1.53036 * 109.52557 * 185.84301 * 15 14 2 17 17 C 1.53120 * 109.27596 * 300.81840 * 16 15 14 18 18 C 1.50703 * 109.52428 * 177.55881 * 17 16 15 19 19 O 1.21250 * 119.99733 * 335.00236 * 18 17 16 20 20 C 1.47164 * 119.99851 * 155.00131 * 18 17 16 21 21 C 1.39855 * 120.16680 * 180.02562 * 20 18 17 22 22 C 1.37890 * 119.82316 * 179.97438 * 21 20 18 23 23 C 1.38405 * 120.17220 * 0.02562 * 22 21 20 24 24 C 1.38408 * 120.34793 * 359.95712 * 23 22 21 25 25 C 1.37888 * 120.17328 * 0.04487 * 24 23 22 26 26 C 1.53127 * 109.16016 * 57.65357 * 17 16 15 27 27 C 1.46845 * 111.00199 * 59.20819 * 14 2 1 28 28 H 1.09002 * 109.47240 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46980 * 300.00085 * 1 2 3 30 30 H 1.08993 * 109.47098 * 60.00252 * 1 2 3 31 31 H 1.08997 * 109.47345 * 295.00633 * 4 2 1 32 32 H 1.08998 * 109.46574 * 55.00370 * 4 2 1 33 33 H 1.09000 * 109.47182 * 300.00006 * 5 4 2 34 34 H 1.08999 * 109.47431 * 59.99886 * 5 4 2 35 35 H 0.96998 * 120.00017 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.46206 * 65.82190 * 15 14 2 37 37 H 1.09009 * 109.46009 * 305.85971 * 15 14 2 38 38 H 1.08996 * 109.50646 * 180.88144 * 16 15 14 39 39 H 1.08997 * 109.50141 * 60.75825 * 16 15 14 40 40 H 1.09003 * 109.52586 * 297.68961 * 17 16 15 41 41 H 1.07999 * 120.09085 * 359.69867 * 21 20 18 42 42 H 1.08000 * 119.91186 * 180.02562 * 22 21 20 43 43 H 1.07998 * 119.82795 * 179.97438 * 23 22 21 44 44 H 1.07996 * 119.91453 * 180.02562 * 24 23 22 45 45 H 1.07996 * 120.08508 * 179.97438 * 25 24 23 46 46 H 1.08997 * 109.50124 * 62.28606 * 26 17 16 47 47 H 1.09001 * 109.49827 * 182.40278 * 26 17 16 48 48 H 1.08997 * 109.46189 * 294.17565 * 27 14 2 49 49 H 1.08994 * 109.46350 * 54.14158 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 6 4.0672 -1.3234 -2.5443 7 1 3.3687 -1.8040 -3.2134 8 6 5.4184 -1.3604 -2.8156 9 7 6.2690 -0.7757 -2.0006 10 14 6.0411 -2.2411 -4.3408 11 1 6.0915 -1.2869 -5.4775 12 1 7.4022 -2.7758 -4.0826 13 1 5.1246 -3.3608 -4.6747 14 7 2.0197 -0.6925 1.1995 15 6 1.6489 0.0389 2.4177 16 6 2.2965 -0.6292 3.6326 17 6 1.8222 -2.0823 3.7230 18 6 2.5028 -2.7631 4.8826 19 8 3.5730 -2.3558 5.2813 20 6 1.8685 -3.9220 5.5308 21 6 2.4967 -4.5561 6.6075 22 6 1.8957 -5.6411 7.2099 23 6 0.6743 -6.1032 6.7514 24 6 0.0461 -5.4808 5.6866 25 6 0.6343 -4.3948 5.0736 26 6 2.1776 -2.8088 2.4228 27 6 1.5335 -2.0774 1.2429 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.7516 -1.7716 -1.2055 32 1 1.6054 -0.2619 -2.1369 33 1 3.8532 0.4368 -1.3573 34 1 3.9995 -1.0728 -0.4259 35 1 7.2196 -0.8014 -2.1917 36 1 0.5649 0.0281 2.5320 37 1 1.9956 1.0696 2.3422 38 1 2.0084 -0.0954 4.5382 39 1 3.3810 -0.6064 3.5254 40 1 0.7424 -2.1046 3.8703 41 1 3.4521 -4.1997 6.9632 42 1 2.3794 -6.1315 8.0417 43 1 0.2088 -6.9537 7.2271 44 1 -0.9070 -5.8470 5.3349 45 1 0.1430 -3.9105 4.2426 46 1 3.2602 -2.8203 2.2966 47 1 1.8046 -3.8322 2.4642 48 1 0.4501 -2.0784 1.3628 49 1 1.7963 -2.5840 0.3143 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172493994.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:23 Heat of formation + Delta-G solvation = -43.057519 kcal Electronic energy + Delta-G solvation = -26411.183920 eV Core-core repulsion = 22915.541659 eV Total energy + Delta-G solvation = -3495.642261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.52563 -40.11371 -39.08456 -36.54419 -34.99401 -33.00769 -31.99536 -31.84608 -31.69760 -30.28864 -27.12946 -26.62880 -24.45144 -24.21609 -23.43365 -23.03889 -21.61278 -20.55147 -19.98443 -18.37508 -18.33129 -17.40307 -16.68023 -16.53031 -16.51624 -16.01585 -15.72153 -15.42558 -15.35368 -14.96844 -14.78128 -14.71251 -14.48971 -14.26153 -13.97672 -13.78120 -13.45676 -13.34020 -13.17353 -12.99876 -12.86715 -12.78233 -12.61992 -12.39350 -12.27048 -12.15971 -11.93124 -11.69940 -11.61218 -11.56545 -11.28678 -11.10775 -10.88647 -10.51746 -10.48176 -9.94411 -9.93572 -8.91303 -8.13291 -6.24320 -0.32867 0.43332 1.38971 1.40970 1.41292 1.51666 2.43300 2.85210 2.91151 3.07544 3.19061 3.67074 3.81317 3.85687 4.01978 4.06781 4.10579 4.18594 4.29768 4.33692 4.37118 4.40969 4.46075 4.49218 4.56146 4.59991 4.67134 4.75680 4.80937 4.83000 4.89808 4.95035 4.99951 5.07268 5.08814 5.14178 5.18111 5.22152 5.32607 5.36507 5.40671 5.48890 5.50840 5.51437 5.60469 5.89993 5.96834 6.03280 6.33076 6.38855 6.43119 6.50700 6.96674 7.44126 8.97942 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014173 B = 0.003011 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.176496 B = 9296.048998 C =10076.361800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.087 3.913 3 H 0.061 0.939 4 C -0.093 4.093 5 C 0.040 3.960 6 C -0.540 4.540 7 H 0.058 0.942 8 C -0.004 4.004 9 N -0.934 5.934 10 Si 0.961 3.039 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.261 1.261 14 N -0.552 5.552 15 C 0.062 3.938 16 C -0.102 4.102 17 C -0.120 4.120 18 C 0.401 3.599 19 O -0.494 6.494 20 C -0.190 4.190 21 C -0.086 4.086 22 C -0.139 4.139 23 C -0.086 4.086 24 C -0.133 4.133 25 C -0.071 4.071 26 C -0.097 4.097 27 C 0.059 3.941 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.051 0.949 33 H -0.026 1.026 34 H -0.001 1.001 35 H 0.260 0.740 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.043 0.957 40 H 0.128 0.872 41 H 0.116 0.884 42 H 0.146 0.854 43 H 0.156 0.844 44 H 0.159 0.841 45 H 0.152 0.848 46 H 0.037 0.963 47 H 0.094 0.906 48 H 0.063 0.937 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.486 -8.926 18.065 28.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.021 4.021 3 H 0.079 0.921 4 C -0.130 4.130 5 C 0.003 3.997 6 C -0.578 4.578 7 H 0.076 0.924 8 C -0.201 4.201 9 N -0.575 5.575 10 Si 0.786 3.214 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.185 1.185 14 N -0.277 5.277 15 C -0.065 4.065 16 C -0.140 4.140 17 C -0.139 4.139 18 C 0.282 3.718 19 O -0.371 6.371 20 C -0.190 4.190 21 C -0.104 4.104 22 C -0.156 4.156 23 C -0.104 4.104 24 C -0.151 4.151 25 C -0.089 4.089 26 C -0.135 4.135 27 C -0.068 4.068 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.070 0.930 33 H -0.007 1.007 34 H 0.017 0.983 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.062 0.938 40 H 0.146 0.854 41 H 0.134 0.866 42 H 0.164 0.836 43 H 0.174 0.826 44 H 0.176 0.824 45 H 0.170 0.830 46 H 0.056 0.944 47 H 0.112 0.888 48 H 0.081 0.919 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.236 -8.689 18.271 27.238 hybrid contribution 0.629 0.039 -0.738 0.971 sum -17.606 -8.650 17.533 26.310 Atomic orbital electron populations 1.22357 0.95408 1.02638 1.02676 1.21643 0.93646 0.97125 0.89659 0.92054 1.21571 0.96413 0.99389 0.95656 1.18801 0.92275 0.93782 0.94865 1.21803 0.92413 1.34252 1.09297 0.92417 1.25989 0.97515 0.96596 0.99997 1.70142 1.02528 1.45810 1.39014 0.85513 0.77539 0.79034 0.79343 1.19809 1.21093 1.18538 1.61911 1.61161 1.02601 1.02036 1.22032 0.98545 0.97258 0.88676 1.21445 1.00422 0.94130 0.97968 1.21693 1.02831 0.95807 0.93588 1.22972 0.84272 0.82062 0.82534 1.90504 1.22313 1.62771 1.61524 1.20568 0.98612 0.99613 1.00251 1.21549 0.99321 0.95285 0.94268 1.21432 0.96672 0.96418 1.01127 1.21862 0.94075 0.99131 0.95327 1.21580 1.01514 0.95651 0.96362 1.21781 0.92671 0.95804 0.98669 1.21463 1.00495 0.99407 0.92161 1.22062 0.97767 0.88837 0.98139 0.91662 0.91365 0.91768 0.92612 0.92995 1.00727 0.98252 0.93149 0.92257 0.91463 0.90241 0.93817 0.85408 0.86567 0.83608 0.82602 0.82361 0.83009 0.94390 0.88784 0.91892 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.50 71.98 0.61 -3.48 16 2 C 0.09 2.90 2.35 44.92 0.11 3.01 16 3 H 0.06 2.21 8.08 -2.39 -0.02 2.19 16 4 C -0.09 -3.82 4.44 30.59 0.14 -3.68 16 5 C 0.04 2.20 4.86 29.85 0.15 2.34 16 6 C -0.54 -31.83 9.11 25.60 0.23 -31.60 16 7 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 8 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 9 N -0.93 -59.99 13.29 21.45 0.28 -59.71 16 10 Si 0.96 45.98 29.54 68.60 2.03 48.01 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 13 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 14 N -0.55 -18.08 4.10 -871.11 -3.57 -21.64 16 15 C 0.06 1.65 5.02 86.32 0.43 2.08 16 16 C -0.10 -2.75 4.96 30.65 0.15 -2.60 16 17 C -0.12 -2.78 1.89 -11.46 -0.02 -2.80 16 18 C 0.40 10.68 6.23 28.03 0.17 10.85 16 19 O -0.49 -17.26 16.04 -2.94 -0.05 -17.30 16 20 C -0.19 -4.04 5.87 -20.15 -0.12 -4.16 16 21 C -0.09 -1.79 9.60 22.58 0.22 -1.58 16 22 C -0.14 -2.02 10.03 22.23 0.22 -1.80 16 23 C -0.09 -0.93 10.04 22.35 0.22 -0.71 16 24 C -0.13 -1.45 10.03 22.23 0.22 -1.23 16 25 C -0.07 -1.04 9.37 22.58 0.21 -0.83 16 26 C -0.10 -2.58 5.36 30.65 0.16 -2.42 16 27 C 0.06 1.66 4.64 86.33 0.40 2.06 16 28 H 0.06 1.42 6.52 -2.39 -0.02 1.41 16 29 H 0.07 1.37 6.65 -2.39 -0.02 1.35 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 2.21 6.05 -2.39 -0.01 2.20 16 32 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 33 H -0.03 -1.57 8.14 -2.39 -0.02 -1.59 16 34 H 0.00 -0.06 7.75 -2.39 -0.02 -0.08 16 35 H 0.26 15.73 8.31 -92.71 -0.77 14.95 16 36 H 0.06 1.22 6.73 -2.39 -0.02 1.20 16 37 H 0.07 1.85 8.08 -2.38 -0.02 1.84 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.04 1.54 7.79 -2.39 -0.02 1.52 16 40 H 0.13 1.99 6.74 -2.39 -0.02 1.98 16 41 H 0.12 2.68 7.65 -2.91 -0.02 2.66 16 42 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 43 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 44 H 0.16 0.78 8.06 -2.91 -0.02 0.76 16 45 H 0.15 1.55 6.47 -2.91 -0.02 1.53 16 46 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.06 1.34 6.62 -2.39 -0.02 1.32 16 49 H 0.07 2.18 5.93 -2.39 -0.01 2.17 16 Total: -1.00 -76.88 382.18 3.59 -73.29 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.92 Total: 13.67 kcal Atomic # 6 Polarization: -40.29 SS G_CDS: 3.98 Total: -36.31 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -3.28 Total: -81.35 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.05 Total: -17.30 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -76.88 3.59 -73.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493994.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.231 kcal (2) G-P(sol) polarization free energy of solvation -76.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds