Wall clock time and date at job start Tue Mar 31 2020 11:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35865 * 117.00167 * 2 1 4 4 C 1.38853 * 119.92163 * 180.02562 * 3 2 1 5 5 C 1.37852 * 120.09416 * 180.02562 * 4 3 2 6 6 C 1.39582 * 119.90990 * 359.97402 * 5 4 3 7 7 C 1.47772 * 120.08788 * 180.02562 * 6 5 4 8 8 C 1.31507 * 118.66262 * 62.75922 * 7 6 5 9 9 C 1.50174 * 123.05648 * 180.38305 * 8 7 6 10 10 N 1.46835 * 110.24871 * 342.90633 * 9 8 7 11 11 C 1.46897 * 111.00056 * 287.75210 * 10 9 8 12 12 H 1.09005 * 109.46687 * 279.42651 * 11 10 9 13 13 C 1.53000 * 109.47276 * 39.42627 * 11 10 9 14 14 C 1.52996 * 109.47346 * 159.42790 * 11 10 9 15 15 C 1.53003 * 109.47106 * 66.43448 * 14 11 10 16 16 C 1.50700 * 109.47302 * 185.14200 * 15 14 11 17 17 H 1.08006 * 120.00081 * 4.96778 * 16 15 14 18 18 C 1.37879 * 120.00422 * 184.97232 * 16 15 14 19 19 N 1.31516 * 119.99535 * 5.03889 * 18 16 15 20 20 Si 1.86795 * 119.99997 * 185.04182 * 18 16 15 21 21 H 1.48500 * 109.47533 * 4.99893 * 20 18 16 22 22 H 1.48503 * 109.47107 * 124.99819 * 20 18 16 23 23 H 1.48504 * 109.47082 * 244.99638 * 20 18 16 24 24 C 1.47202 * 110.26794 * 51.18274 * 10 9 8 25 25 C 1.50339 * 118.66282 * 242.78799 * 7 6 5 26 26 C 1.39578 * 119.82680 * 0.27690 * 6 5 4 27 27 C 1.37857 * 119.91653 * 359.47015 * 26 6 5 28 28 H 1.09004 * 109.46890 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47094 * 299.99737 * 1 2 3 30 30 H 1.09001 * 109.47389 * 60.00233 * 1 2 3 31 31 H 1.08005 * 119.95583 * 0.02562 * 4 3 2 32 32 H 1.07996 * 120.04946 * 179.97438 * 5 4 3 33 33 H 1.08001 * 118.47419 * 0.37073 * 8 7 6 34 34 H 1.08997 * 109.33921 * 103.14179 * 9 8 7 35 35 H 1.09001 * 109.34038 * 222.66601 * 9 8 7 36 36 H 1.08997 * 109.46882 * 309.47935 * 13 11 10 37 37 H 1.08995 * 109.47180 * 69.48331 * 13 11 10 38 38 H 1.08999 * 109.47165 * 189.48488 * 13 11 10 39 39 H 1.09002 * 109.47507 * 186.43047 * 14 11 10 40 40 H 1.08998 * 109.47001 * 306.43422 * 14 11 10 41 41 H 1.09004 * 109.47049 * 305.13666 * 15 14 11 42 42 H 1.08991 * 109.47365 * 65.14219 * 15 14 11 43 43 H 0.96995 * 119.99525 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.63301 * 170.98779 * 24 10 9 45 45 H 1.09004 * 109.77250 * 50.51653 * 24 10 9 46 46 H 1.09002 * 109.42695 * 283.51173 * 25 7 6 47 47 H 1.09002 * 109.43158 * 43.37158 * 25 7 6 48 48 H 1.08001 * 120.04348 * 179.72519 * 26 6 5 49 49 H 1.07996 * 119.96180 * 180.23443 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 3.4326 1.2813 -0.0005 5 6 4.0621 2.5076 0.0000 6 6 3.3036 3.6794 0.0005 7 6 3.9744 4.9961 0.0005 8 6 4.7310 5.3186 -1.0257 9 6 5.4642 6.6254 -1.1241 10 7 4.9066 7.5940 -0.1718 11 6 3.5845 8.0614 -0.6095 12 1 3.7054 8.8354 -1.3674 13 6 2.7984 6.8886 -1.1990 14 6 2.8240 8.6346 0.5880 15 6 3.5254 9.9030 1.0779 16 6 2.8517 10.3971 2.3322 17 1 2.0602 9.8177 2.7841 18 6 3.2457 11.5888 2.9028 19 7 4.1391 12.3427 2.3002 20 14 2.5107 12.1324 4.5317 21 1 1.6280 11.0608 5.0588 22 1 3.6020 12.3973 5.5034 23 1 1.7177 13.3714 4.3280 24 6 4.8381 7.0035 1.1749 25 6 3.7647 5.9122 1.1739 26 6 1.9099 3.6042 0.0064 27 6 1.2877 2.3740 0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 4.0188 0.3742 -0.0014 32 1 5.1407 2.5618 0.0000 33 1 4.8298 4.6106 -1.8352 34 1 6.5189 6.4654 -0.9004 35 1 5.3679 7.0180 -2.1364 36 1 3.4121 6.3755 -1.9394 37 1 2.5318 6.1932 -0.4031 38 1 1.8913 7.2617 -1.6745 39 1 1.8040 8.8760 0.2889 40 1 2.8025 7.8980 1.3911 41 1 4.5712 9.6808 1.2907 42 1 3.4667 10.6714 0.3072 43 1 4.4166 13.1809 2.7018 44 1 4.5761 7.7742 1.8998 45 1 5.8027 6.5681 1.4361 46 1 2.7794 6.3728 1.1027 47 1 3.8301 5.3383 2.0983 48 1 1.3196 4.5086 0.0113 49 1 0.2093 2.3150 0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172510338.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:09 Heat of formation + Delta-G solvation = 36.590489 kcal Electronic energy + Delta-G solvation = -26785.086793 eV Core-core repulsion = 23292.898328 eV Total energy + Delta-G solvation = -3492.188464 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -40.98342 -40.06079 -37.65782 -34.44215 -32.92031 -31.77766 -31.24395 -30.95948 -29.27362 -28.89635 -27.44896 -25.02378 -24.17161 -23.09150 -22.51735 -21.79507 -21.06096 -19.45079 -18.42713 -17.97921 -16.63430 -16.29013 -16.11608 -16.00868 -15.19021 -14.86552 -14.81326 -14.42692 -14.01772 -13.92941 -13.72235 -13.58342 -12.95637 -12.77562 -12.61062 -12.35700 -12.28313 -12.19707 -11.98748 -11.73673 -11.62912 -11.46293 -11.25315 -11.09639 -11.04093 -10.89174 -10.80964 -10.42941 -10.28142 -9.90761 -9.43691 -9.20930 -9.15718 -8.91240 -8.63411 -8.24624 -7.98948 -7.75608 -5.91877 -3.93075 1.12050 1.18483 2.22633 3.00646 3.34359 3.42134 3.45611 3.58224 4.32985 4.51614 4.57618 4.67171 4.77564 4.81795 4.82688 5.03540 5.12395 5.18886 5.24857 5.34997 5.42488 5.42768 5.43470 5.45848 5.56680 5.73057 5.79804 5.83283 5.85816 5.88524 5.97260 6.06186 6.12526 6.23122 6.23964 6.35211 6.42519 6.46562 6.50206 6.56885 6.63019 6.77310 6.92887 6.99831 7.14677 7.25173 7.56334 7.64386 7.83220 8.00710 8.15638 8.52782 9.15580 9.69856 11.19041 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.018074 B = 0.002963 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.772187 B = 9448.721686 C =10316.072248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.119 3.881 4 C -0.151 4.151 5 C -0.072 4.072 6 C -0.076 4.076 7 C -0.085 4.085 8 C -0.168 4.168 9 C 0.081 3.919 10 N -0.512 5.512 11 C 0.080 3.920 12 H 0.076 0.924 13 C -0.206 4.206 14 C -0.122 4.122 15 C 0.025 3.975 16 C -0.520 4.520 17 H 0.051 0.949 18 C 0.057 3.943 19 N -0.892 5.892 20 Si 0.885 3.115 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.048 3.952 25 C -0.128 4.128 26 C -0.069 4.069 27 C -0.205 4.205 28 H 0.098 0.902 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.042 0.958 39 H 0.047 0.953 40 H 0.062 0.938 41 H 0.027 0.973 42 H 0.016 0.984 43 H 0.258 0.742 44 H 0.105 0.895 45 H 0.067 0.933 46 H 0.096 0.904 47 H 0.068 0.932 48 H 0.126 0.874 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.958 -23.166 -7.306 24.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.074 3.926 4 C -0.170 4.170 5 C -0.090 4.090 6 C -0.076 4.076 7 C -0.085 4.085 8 C -0.187 4.187 9 C -0.047 4.047 10 N -0.234 5.234 11 C -0.028 4.028 12 H 0.094 0.906 13 C -0.263 4.263 14 C -0.159 4.159 15 C -0.012 4.012 16 C -0.558 4.558 17 H 0.070 0.930 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.714 3.286 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.212 1.212 24 C -0.080 4.080 25 C -0.165 4.165 26 C -0.087 4.087 27 C -0.224 4.224 28 H 0.117 0.883 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.045 0.955 42 H 0.034 0.966 43 H 0.068 0.932 44 H 0.123 0.877 45 H 0.085 0.915 46 H 0.113 0.887 47 H 0.087 0.913 48 H 0.144 0.856 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.460 -22.754 -7.272 24.014 hybrid contribution -1.337 -0.244 0.761 1.557 sum -3.797 -22.998 -6.511 24.201 Atomic orbital electron populations 1.23047 0.78444 1.03829 1.01460 1.86042 1.21359 1.27147 1.88845 1.19092 0.92348 0.84038 0.97113 1.20330 0.91264 0.98557 1.06812 1.21098 0.99740 0.90596 0.97528 1.18979 0.92888 0.93041 1.02686 1.19505 0.98687 0.93099 0.97198 1.23093 0.98642 0.99437 0.97550 1.21101 0.98151 0.87926 0.97529 1.62806 1.24112 1.34748 1.01710 1.21852 0.87164 0.95374 0.98426 0.90594 1.23812 1.00201 1.00764 1.01535 1.22101 0.98244 1.00362 0.95217 1.19097 0.96025 0.90595 0.95465 1.21339 1.19100 1.05454 1.09927 0.93040 1.24999 0.95392 0.96604 0.97341 1.69991 1.32159 1.12688 1.38330 0.86650 0.78935 0.78574 0.84484 1.19866 1.21099 1.21165 1.22377 0.97275 0.95842 0.92460 1.21596 1.02423 0.96751 0.95771 1.21099 0.93810 0.97047 0.96757 1.21170 0.99968 0.92266 1.08998 0.88323 0.92586 0.92657 0.85308 0.85288 0.87774 0.90020 0.90265 0.91724 0.90144 0.93932 0.93383 0.91921 0.95480 0.96559 0.93214 0.87693 0.91496 0.88662 0.91327 0.85583 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.28 10.49 -19.32 -0.20 -3.48 16 3 C 0.12 1.31 6.69 -39.12 -0.26 1.05 16 4 C -0.15 -1.62 9.97 -39.50 -0.39 -2.01 16 5 C -0.07 -0.78 9.64 -39.22 -0.38 -1.16 16 6 C -0.08 -0.90 5.19 -105.00 -0.55 -1.45 16 7 C -0.08 -1.07 3.05 -102.74 -0.31 -1.38 16 8 C -0.17 -2.04 6.63 -36.40 -0.24 -2.28 16 9 C 0.08 1.07 5.52 -5.27 -0.03 1.05 16 10 N -0.51 -8.44 4.77 -228.15 -1.09 -9.53 16 11 C 0.08 1.37 2.68 -67.72 -0.18 1.19 16 12 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 13 C -0.21 -2.96 7.38 37.16 0.27 -2.68 16 14 C -0.12 -2.45 3.80 -26.73 -0.10 -2.55 16 15 C 0.03 0.64 4.48 -27.88 -0.12 0.52 16 16 C -0.52 -14.61 9.10 -34.44 -0.31 -14.92 16 17 H 0.05 1.41 7.75 -52.48 -0.41 1.01 16 18 C 0.06 1.66 5.45 -17.82 -0.10 1.56 16 19 N -0.89 -27.02 13.29 55.43 0.74 -26.29 16 20 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.05 0.78 5.20 -3.62 -0.02 0.76 16 25 C -0.13 -1.81 4.76 -28.02 -0.13 -1.94 16 26 C -0.07 -0.80 9.55 -39.22 -0.37 -1.17 16 27 C -0.21 -2.17 9.02 -39.49 -0.36 -2.53 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.33 7.65 -51.93 -0.40 -0.07 16 30 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 31 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 32 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 33 H 0.10 1.15 7.98 -52.49 -0.42 0.73 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 0.99 7.74 -51.93 -0.40 0.59 16 36 H 0.06 0.87 4.65 -51.93 -0.24 0.63 16 37 H 0.08 1.13 2.20 -51.93 -0.11 1.01 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 1.21 4.08 -51.93 -0.21 1.00 16 41 H 0.03 0.73 6.64 -51.93 -0.35 0.38 16 42 H 0.02 0.45 8.13 -51.93 -0.42 0.03 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.10 2.00 5.40 -51.93 -0.28 1.72 16 45 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 46 H 0.10 1.44 3.92 -51.93 -0.20 1.24 16 47 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.13 1.41 7.20 -52.49 -0.38 1.03 16 49 H 0.13 1.08 6.28 -52.49 -0.33 0.75 16 LS Contribution 365.98 15.07 5.52 5.52 Total: -1.00 -31.03 365.98 -10.15 -41.18 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -7.49 Total: 2.68 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: -2.60 Total: -26.79 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: -0.35 Total: -35.82 kcal Atomic # 8 Polarization: -3.28 SS G_CDS: -0.20 Total: -3.48 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.03 -10.15 -41.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172510338.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.769 kcal (2) G-P(sol) polarization free energy of solvation -31.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds