Wall clock time and date at job start Tue Mar 31 2020 11:15:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.35865 * 117.00167 * 2 1
4 4 C 1.38853 * 119.92163 * 180.02562 * 3 2 1
5 5 C 1.37852 * 120.09416 * 180.02562 * 4 3 2
6 6 C 1.39582 * 119.90990 * 359.97402 * 5 4 3
7 7 C 1.47772 * 120.08788 * 180.02562 * 6 5 4
8 8 C 1.31507 * 118.66262 * 62.75922 * 7 6 5
9 9 C 1.50174 * 123.05648 * 180.38305 * 8 7 6
10 10 N 1.46835 * 110.24871 * 342.90633 * 9 8 7
11 11 C 1.46897 * 111.00056 * 287.75210 * 10 9 8
12 12 H 1.09005 * 109.46687 * 279.42651 * 11 10 9
13 13 C 1.53000 * 109.47276 * 39.42627 * 11 10 9
14 14 C 1.52996 * 109.47346 * 159.42790 * 11 10 9
15 15 C 1.53003 * 109.47106 * 66.43448 * 14 11 10
16 16 C 1.50700 * 109.47302 * 185.14200 * 15 14 11
17 17 H 1.08006 * 120.00081 * 4.96778 * 16 15 14
18 18 C 1.37879 * 120.00422 * 184.97232 * 16 15 14
19 19 N 1.31516 * 119.99535 * 5.03889 * 18 16 15
20 20 Si 1.86795 * 119.99997 * 185.04182 * 18 16 15
21 21 H 1.48500 * 109.47533 * 4.99893 * 20 18 16
22 22 H 1.48503 * 109.47107 * 124.99819 * 20 18 16
23 23 H 1.48504 * 109.47082 * 244.99638 * 20 18 16
24 24 C 1.47202 * 110.26794 * 51.18274 * 10 9 8
25 25 C 1.50339 * 118.66282 * 242.78799 * 7 6 5
26 26 C 1.39578 * 119.82680 * 0.27690 * 6 5 4
27 27 C 1.37857 * 119.91653 * 359.47015 * 26 6 5
28 28 H 1.09004 * 109.46890 * 179.97438 * 1 2 3
29 29 H 1.08995 * 109.47094 * 299.99737 * 1 2 3
30 30 H 1.09001 * 109.47389 * 60.00233 * 1 2 3
31 31 H 1.08005 * 119.95583 * 0.02562 * 4 3 2
32 32 H 1.07996 * 120.04946 * 179.97438 * 5 4 3
33 33 H 1.08001 * 118.47419 * 0.37073 * 8 7 6
34 34 H 1.08997 * 109.33921 * 103.14179 * 9 8 7
35 35 H 1.09001 * 109.34038 * 222.66601 * 9 8 7
36 36 H 1.08997 * 109.46882 * 309.47935 * 13 11 10
37 37 H 1.08995 * 109.47180 * 69.48331 * 13 11 10
38 38 H 1.08999 * 109.47165 * 189.48488 * 13 11 10
39 39 H 1.09002 * 109.47507 * 186.43047 * 14 11 10
40 40 H 1.08998 * 109.47001 * 306.43422 * 14 11 10
41 41 H 1.09004 * 109.47049 * 305.13666 * 15 14 11
42 42 H 1.08991 * 109.47365 * 65.14219 * 15 14 11
43 43 H 0.96995 * 119.99525 * 180.02562 * 19 18 16
44 44 H 1.09004 * 109.63301 * 170.98779 * 24 10 9
45 45 H 1.09004 * 109.77250 * 50.51653 * 24 10 9
46 46 H 1.09002 * 109.42695 * 283.51173 * 25 7 6
47 47 H 1.09002 * 109.43158 * 43.37158 * 25 7 6
48 48 H 1.08001 * 120.04348 * 179.72519 * 26 6 5
49 49 H 1.07996 * 119.96180 * 180.23443 * 27 26 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0458 1.2105 0.0000
4 6 3.4326 1.2813 -0.0005
5 6 4.0621 2.5076 0.0000
6 6 3.3036 3.6794 0.0005
7 6 3.9744 4.9961 0.0005
8 6 4.7310 5.3186 -1.0257
9 6 5.4642 6.6254 -1.1241
10 7 4.9066 7.5940 -0.1718
11 6 3.5845 8.0614 -0.6095
12 1 3.7054 8.8354 -1.3674
13 6 2.7984 6.8886 -1.1990
14 6 2.8240 8.6346 0.5880
15 6 3.5254 9.9030 1.0779
16 6 2.8517 10.3971 2.3322
17 1 2.0602 9.8177 2.7841
18 6 3.2457 11.5888 2.9028
19 7 4.1391 12.3427 2.3002
20 14 2.5107 12.1324 4.5317
21 1 1.6280 11.0608 5.0588
22 1 3.6020 12.3973 5.5034
23 1 1.7177 13.3714 4.3280
24 6 4.8381 7.0035 1.1749
25 6 3.7647 5.9122 1.1739
26 6 1.9099 3.6042 0.0064
27 6 1.2877 2.3740 0.0005
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5138 -0.8900
31 1 4.0188 0.3742 -0.0014
32 1 5.1407 2.5618 0.0000
33 1 4.8298 4.6106 -1.8352
34 1 6.5189 6.4654 -0.9004
35 1 5.3679 7.0180 -2.1364
36 1 3.4121 6.3755 -1.9394
37 1 2.5318 6.1932 -0.4031
38 1 1.8913 7.2617 -1.6745
39 1 1.8040 8.8760 0.2889
40 1 2.8025 7.8980 1.3911
41 1 4.5712 9.6808 1.2907
42 1 3.4667 10.6714 0.3072
43 1 4.4166 13.1809 2.7018
44 1 4.5761 7.7742 1.8998
45 1 5.8027 6.5681 1.4361
46 1 2.7794 6.3728 1.1027
47 1 3.8301 5.3383 2.0983
48 1 1.3196 4.5086 0.0113
49 1 0.2093 2.3150 0.0012
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001172510338.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:15:09
Heat of formation + Delta-G solvation = 36.590489 kcal
Electronic energy + Delta-G solvation = -26785.086793 eV
Core-core repulsion = 23292.898328 eV
Total energy + Delta-G solvation = -3492.188464 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 2.58 seconds
Orbital eigenvalues (eV)
-40.98342 -40.06079 -37.65782 -34.44215 -32.92031 -31.77766 -31.24395 -30.95948
-29.27362 -28.89635 -27.44896 -25.02378 -24.17161 -23.09150 -22.51735 -21.79507
-21.06096 -19.45079 -18.42713 -17.97921 -16.63430 -16.29013 -16.11608 -16.00868
-15.19021 -14.86552 -14.81326 -14.42692 -14.01772 -13.92941 -13.72235 -13.58342
-12.95637 -12.77562 -12.61062 -12.35700 -12.28313 -12.19707 -11.98748 -11.73673
-11.62912 -11.46293 -11.25315 -11.09639 -11.04093 -10.89174 -10.80964 -10.42941
-10.28142 -9.90761 -9.43691 -9.20930 -9.15718 -8.91240 -8.63411 -8.24624
-7.98948 -7.75608 -5.91877 -3.93075 1.12050 1.18483 2.22633 3.00646
3.34359 3.42134 3.45611 3.58224 4.32985 4.51614 4.57618 4.67171
4.77564 4.81795 4.82688 5.03540 5.12395 5.18886 5.24857 5.34997
5.42488 5.42768 5.43470 5.45848 5.56680 5.73057 5.79804 5.83283
5.85816 5.88524 5.97260 6.06186 6.12526 6.23122 6.23964 6.35211
6.42519 6.46562 6.50206 6.56885 6.63019 6.77310 6.92887 6.99831
7.14677 7.25173 7.56334 7.64386 7.83220 8.00710 8.15638 8.52782
9.15580 9.69856 11.19041
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.018074 B = 0.002963 C = 0.002714
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1548.772187 B = 9448.721686 C =10316.072248
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.320 6.320
3 C 0.119 3.881
4 C -0.151 4.151
5 C -0.072 4.072
6 C -0.076 4.076
7 C -0.085 4.085
8 C -0.168 4.168
9 C 0.081 3.919
10 N -0.512 5.512
11 C 0.080 3.920
12 H 0.076 0.924
13 C -0.206 4.206
14 C -0.122 4.122
15 C 0.025 3.975
16 C -0.520 4.520
17 H 0.051 0.949
18 C 0.057 3.943
19 N -0.892 5.892
20 Si 0.885 3.115
21 H -0.274 1.274
22 H -0.285 1.285
23 H -0.285 1.285
24 C 0.048 3.952
25 C -0.128 4.128
26 C -0.069 4.069
27 C -0.205 4.205
28 H 0.098 0.902
29 H 0.056 0.944
30 H 0.055 0.945
31 H 0.129 0.871
32 H 0.129 0.871
33 H 0.104 0.896
34 H 0.082 0.918
35 H 0.079 0.921
36 H 0.064 0.936
37 H 0.080 0.920
38 H 0.042 0.958
39 H 0.047 0.953
40 H 0.062 0.938
41 H 0.027 0.973
42 H 0.016 0.984
43 H 0.258 0.742
44 H 0.105 0.895
45 H 0.067 0.933
46 H 0.096 0.904
47 H 0.068 0.932
48 H 0.126 0.874
49 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.958 -23.166 -7.306 24.470
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.234 6.234
3 C 0.074 3.926
4 C -0.170 4.170
5 C -0.090 4.090
6 C -0.076 4.076
7 C -0.085 4.085
8 C -0.187 4.187
9 C -0.047 4.047
10 N -0.234 5.234
11 C -0.028 4.028
12 H 0.094 0.906
13 C -0.263 4.263
14 C -0.159 4.159
15 C -0.012 4.012
16 C -0.558 4.558
17 H 0.070 0.930
18 C -0.143 4.143
19 N -0.532 5.532
20 Si 0.714 3.286
21 H -0.199 1.199
22 H -0.211 1.211
23 H -0.212 1.212
24 C -0.080 4.080
25 C -0.165 4.165
26 C -0.087 4.087
27 C -0.224 4.224
28 H 0.117 0.883
29 H 0.074 0.926
30 H 0.073 0.927
31 H 0.147 0.853
32 H 0.147 0.853
33 H 0.122 0.878
34 H 0.100 0.900
35 H 0.097 0.903
36 H 0.083 0.917
37 H 0.099 0.901
38 H 0.061 0.939
39 H 0.066 0.934
40 H 0.081 0.919
41 H 0.045 0.955
42 H 0.034 0.966
43 H 0.068 0.932
44 H 0.123 0.877
45 H 0.085 0.915
46 H 0.113 0.887
47 H 0.087 0.913
48 H 0.144 0.856
49 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges -2.460 -22.754 -7.272 24.014
hybrid contribution -1.337 -0.244 0.761 1.557
sum -3.797 -22.998 -6.511 24.201
Atomic orbital electron populations
1.23047 0.78444 1.03829 1.01460 1.86042 1.21359 1.27147 1.88845
1.19092 0.92348 0.84038 0.97113 1.20330 0.91264 0.98557 1.06812
1.21098 0.99740 0.90596 0.97528 1.18979 0.92888 0.93041 1.02686
1.19505 0.98687 0.93099 0.97198 1.23093 0.98642 0.99437 0.97550
1.21101 0.98151 0.87926 0.97529 1.62806 1.24112 1.34748 1.01710
1.21852 0.87164 0.95374 0.98426 0.90594 1.23812 1.00201 1.00764
1.01535 1.22101 0.98244 1.00362 0.95217 1.19097 0.96025 0.90595
0.95465 1.21339 1.19100 1.05454 1.09927 0.93040 1.24999 0.95392
0.96604 0.97341 1.69991 1.32159 1.12688 1.38330 0.86650 0.78935
0.78574 0.84484 1.19866 1.21099 1.21165 1.22377 0.97275 0.95842
0.92460 1.21596 1.02423 0.96751 0.95771 1.21099 0.93810 0.97047
0.96757 1.21170 0.99968 0.92266 1.08998 0.88323 0.92586 0.92657
0.85308 0.85288 0.87774 0.90020 0.90265 0.91724 0.90144 0.93932
0.93383 0.91921 0.95480 0.96559 0.93214 0.87693 0.91496 0.88662
0.91327 0.85583 0.85505
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.18 9.81 101.05 0.99 1.17 16
2 O -0.32 -3.28 10.49 -19.32 -0.20 -3.48 16
3 C 0.12 1.31 6.69 -39.12 -0.26 1.05 16
4 C -0.15 -1.62 9.97 -39.50 -0.39 -2.01 16
5 C -0.07 -0.78 9.64 -39.22 -0.38 -1.16 16
6 C -0.08 -0.90 5.19 -105.00 -0.55 -1.45 16
7 C -0.08 -1.07 3.05 -102.74 -0.31 -1.38 16
8 C -0.17 -2.04 6.63 -36.40 -0.24 -2.28 16
9 C 0.08 1.07 5.52 -5.27 -0.03 1.05 16
10 N -0.51 -8.44 4.77 -228.15 -1.09 -9.53 16
11 C 0.08 1.37 2.68 -67.72 -0.18 1.19 16
12 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16
13 C -0.21 -2.96 7.38 37.16 0.27 -2.68 16
14 C -0.12 -2.45 3.80 -26.73 -0.10 -2.55 16
15 C 0.03 0.64 4.48 -27.88 -0.12 0.52 16
16 C -0.52 -14.61 9.10 -34.44 -0.31 -14.92 16
17 H 0.05 1.41 7.75 -52.48 -0.41 1.01 16
18 C 0.06 1.66 5.45 -17.82 -0.10 1.56 16
19 N -0.89 -27.02 13.29 55.43 0.74 -26.29 16
20 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16
21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16
22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16
23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
24 C 0.05 0.78 5.20 -3.62 -0.02 0.76 16
25 C -0.13 -1.81 4.76 -28.02 -0.13 -1.94 16
26 C -0.07 -0.80 9.55 -39.22 -0.37 -1.17 16
27 C -0.21 -2.17 9.02 -39.49 -0.36 -2.53 16
28 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16
29 H 0.06 0.33 7.65 -51.93 -0.40 -0.07 16
30 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16
31 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16
32 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16
33 H 0.10 1.15 7.98 -52.49 -0.42 0.73 16
34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16
35 H 0.08 0.99 7.74 -51.93 -0.40 0.59 16
36 H 0.06 0.87 4.65 -51.93 -0.24 0.63 16
37 H 0.08 1.13 2.20 -51.93 -0.11 1.01 16
38 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16
39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16
40 H 0.06 1.21 4.08 -51.93 -0.21 1.00 16
41 H 0.03 0.73 6.64 -51.93 -0.35 0.38 16
42 H 0.02 0.45 8.13 -51.93 -0.42 0.03 16
43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16
44 H 0.10 2.00 5.40 -51.93 -0.28 1.72 16
45 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16
46 H 0.10 1.44 3.92 -51.93 -0.20 1.24 16
47 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
48 H 0.13 1.41 7.20 -52.49 -0.38 1.03 16
49 H 0.13 1.08 6.28 -52.49 -0.33 0.75 16
LS Contribution 365.98 15.07 5.52 5.52
Total: -1.00 -31.03 365.98 -10.15 -41.18
By element:
Atomic # 1 Polarization: 10.16 SS G_CDS: -7.49 Total: 2.68 kcal
Atomic # 6 Polarization: -24.19 SS G_CDS: -2.60 Total: -26.79 kcal
Atomic # 7 Polarization: -35.46 SS G_CDS: -0.35 Total: -35.82 kcal
Atomic # 8 Polarization: -3.28 SS G_CDS: -0.20 Total: -3.48 kcal
Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal
Total LS contribution 5.52 Total: 5.52 kcal
Total: -31.03 -10.15 -41.18 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001172510338.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.769 kcal
(2) G-P(sol) polarization free energy of solvation -31.032 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.736 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.590 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.58 seconds