Wall clock time and date at job start Tue Mar 31 2020 11:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35865 * 117.00167 * 2 1 4 4 C 1.38853 * 119.92163 * 180.02562 * 3 2 1 5 5 C 1.37852 * 120.09416 * 180.02562 * 4 3 2 6 6 C 1.39582 * 119.90990 * 359.97402 * 5 4 3 7 7 C 1.47772 * 120.08788 * 180.02562 * 6 5 4 8 8 C 1.31507 * 118.66262 * 62.75922 * 7 6 5 9 9 C 1.50174 * 123.05648 * 180.38305 * 8 7 6 10 10 N 1.46835 * 110.24871 * 342.90633 * 9 8 7 11 11 C 1.46897 * 111.00056 * 287.75210 * 10 9 8 12 12 H 1.09005 * 109.46687 * 279.42651 * 11 10 9 13 13 C 1.53000 * 109.47276 * 39.42627 * 11 10 9 14 14 C 1.52996 * 109.47346 * 159.42790 * 11 10 9 15 15 C 1.53003 * 109.47106 * 66.43448 * 14 11 10 16 16 C 1.50700 * 109.47302 * 185.14200 * 15 14 11 17 17 H 1.08006 * 120.00081 * 4.96778 * 16 15 14 18 18 C 1.37879 * 120.00422 * 184.97232 * 16 15 14 19 19 N 1.31516 * 119.99535 * 5.03889 * 18 16 15 20 20 Si 1.86795 * 119.99997 * 185.04182 * 18 16 15 21 21 H 1.48500 * 109.47533 * 4.99893 * 20 18 16 22 22 H 1.48503 * 109.47107 * 124.99819 * 20 18 16 23 23 H 1.48504 * 109.47082 * 244.99638 * 20 18 16 24 24 C 1.47202 * 110.26794 * 51.18274 * 10 9 8 25 25 C 1.50339 * 118.66282 * 242.78799 * 7 6 5 26 26 C 1.39578 * 119.82680 * 0.27690 * 6 5 4 27 27 C 1.37857 * 119.91653 * 359.47015 * 26 6 5 28 28 H 1.09004 * 109.46890 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47094 * 299.99737 * 1 2 3 30 30 H 1.09001 * 109.47389 * 60.00233 * 1 2 3 31 31 H 1.08005 * 119.95583 * 0.02562 * 4 3 2 32 32 H 1.07996 * 120.04946 * 179.97438 * 5 4 3 33 33 H 1.08001 * 118.47419 * 0.37073 * 8 7 6 34 34 H 1.08997 * 109.33921 * 103.14179 * 9 8 7 35 35 H 1.09001 * 109.34038 * 222.66601 * 9 8 7 36 36 H 1.08997 * 109.46882 * 309.47935 * 13 11 10 37 37 H 1.08995 * 109.47180 * 69.48331 * 13 11 10 38 38 H 1.08999 * 109.47165 * 189.48488 * 13 11 10 39 39 H 1.09002 * 109.47507 * 186.43047 * 14 11 10 40 40 H 1.08998 * 109.47001 * 306.43422 * 14 11 10 41 41 H 1.09004 * 109.47049 * 305.13666 * 15 14 11 42 42 H 1.08991 * 109.47365 * 65.14219 * 15 14 11 43 43 H 0.96995 * 119.99525 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.63301 * 170.98779 * 24 10 9 45 45 H 1.09004 * 109.77250 * 50.51653 * 24 10 9 46 46 H 1.09002 * 109.42695 * 283.51173 * 25 7 6 47 47 H 1.09002 * 109.43158 * 43.37158 * 25 7 6 48 48 H 1.08001 * 120.04348 * 179.72519 * 26 6 5 49 49 H 1.07996 * 119.96180 * 180.23443 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 3.4326 1.2813 -0.0005 5 6 4.0621 2.5076 0.0000 6 6 3.3036 3.6794 0.0005 7 6 3.9744 4.9961 0.0005 8 6 4.7310 5.3186 -1.0257 9 6 5.4642 6.6254 -1.1241 10 7 4.9066 7.5940 -0.1718 11 6 3.5845 8.0614 -0.6095 12 1 3.7054 8.8354 -1.3674 13 6 2.7984 6.8886 -1.1990 14 6 2.8240 8.6346 0.5880 15 6 3.5254 9.9030 1.0779 16 6 2.8517 10.3971 2.3322 17 1 2.0602 9.8177 2.7841 18 6 3.2457 11.5888 2.9028 19 7 4.1391 12.3427 2.3002 20 14 2.5107 12.1324 4.5317 21 1 1.6280 11.0608 5.0588 22 1 3.6020 12.3973 5.5034 23 1 1.7177 13.3714 4.3280 24 6 4.8381 7.0035 1.1749 25 6 3.7647 5.9122 1.1739 26 6 1.9099 3.6042 0.0064 27 6 1.2877 2.3740 0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 4.0188 0.3742 -0.0014 32 1 5.1407 2.5618 0.0000 33 1 4.8298 4.6106 -1.8352 34 1 6.5189 6.4654 -0.9004 35 1 5.3679 7.0180 -2.1364 36 1 3.4121 6.3755 -1.9394 37 1 2.5318 6.1932 -0.4031 38 1 1.8913 7.2617 -1.6745 39 1 1.8040 8.8760 0.2889 40 1 2.8025 7.8980 1.3911 41 1 4.5712 9.6808 1.2907 42 1 3.4667 10.6714 0.3072 43 1 4.4166 13.1809 2.7018 44 1 4.5761 7.7742 1.8998 45 1 5.8027 6.5681 1.4361 46 1 2.7794 6.3728 1.1027 47 1 3.8301 5.3383 2.0983 48 1 1.3196 4.5086 0.0113 49 1 0.2093 2.3150 0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172510338.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:05 Heat of formation + Delta-G solvation = 19.351560 kcal Electronic energy + Delta-G solvation = -26785.834329 eV Core-core repulsion = 23292.898328 eV Total energy + Delta-G solvation = -3492.936000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.10908 -40.87551 -38.48270 -36.01941 -34.55071 -33.21219 -32.18380 -32.07448 -30.61324 -30.09237 -28.08101 -26.83625 -25.33153 -24.17398 -23.41518 -23.10354 -22.48021 -20.87914 -19.23767 -19.05250 -18.33347 -17.61399 -17.05433 -16.64655 -16.57713 -16.34801 -16.02575 -15.63847 -15.02028 -14.92049 -14.71099 -14.54489 -14.35807 -14.12162 -13.72450 -13.61226 -13.46140 -13.35939 -13.29912 -13.06933 -12.81340 -12.78659 -12.71557 -12.44759 -12.35910 -12.12979 -11.95613 -11.81387 -11.73081 -11.47799 -11.24314 -10.91395 -10.79911 -10.46924 -9.99868 -9.59158 -9.02505 -8.83750 -8.13850 -6.23406 0.28916 0.38571 1.26575 1.39984 1.40782 1.53389 2.37515 2.43650 2.76456 3.13070 3.18934 3.77799 3.85055 3.94852 3.98444 4.10786 4.17417 4.26036 4.30140 4.32279 4.37874 4.40203 4.45685 4.53861 4.61761 4.67669 4.71894 4.75868 4.76051 4.77984 4.89624 4.94634 5.00134 5.06506 5.08049 5.09981 5.18149 5.31777 5.34883 5.44806 5.50391 5.57830 5.62132 5.68977 5.79350 5.87160 5.96983 6.01025 6.27244 6.35104 6.41508 6.43085 6.95793 7.44486 8.97723 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.018074 B = 0.002963 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.772187 B = 9448.721686 C =10316.072248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.112 3.888 4 C -0.159 4.159 5 C -0.072 4.072 6 C -0.088 4.088 7 C -0.084 4.084 8 C -0.160 4.160 9 C 0.080 3.920 10 N -0.536 5.536 11 C 0.087 3.913 12 H 0.059 0.941 13 C -0.195 4.195 14 C -0.109 4.109 15 C 0.036 3.964 16 C -0.538 4.538 17 H 0.056 0.944 18 C 0.000 4.000 19 N -0.932 5.932 20 Si 0.958 3.042 21 H -0.262 1.262 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.053 3.947 25 C -0.120 4.120 26 C -0.079 4.079 27 C -0.208 4.208 28 H 0.119 0.881 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.124 0.876 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.006 0.994 42 H -0.021 1.021 43 H 0.261 0.739 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.073 0.927 48 H 0.126 0.874 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.816 -25.408 -7.266 26.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.067 3.933 4 C -0.177 4.177 5 C -0.089 4.089 6 C -0.088 4.088 7 C -0.084 4.084 8 C -0.180 4.180 9 C -0.047 4.047 10 N -0.258 5.258 11 C -0.022 4.022 12 H 0.077 0.923 13 C -0.252 4.252 14 C -0.147 4.147 15 C -0.001 4.001 16 C -0.576 4.576 17 H 0.074 0.926 18 C -0.198 4.198 19 N -0.573 5.573 20 Si 0.783 3.217 21 H -0.186 1.186 22 H -0.205 1.205 23 H -0.206 1.206 24 C -0.075 4.075 25 C -0.158 4.158 26 C -0.097 4.097 27 C -0.227 4.227 28 H 0.138 0.862 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.142 0.858 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.024 0.976 42 H -0.003 1.003 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.102 0.898 47 H 0.091 0.909 48 H 0.144 0.856 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.331 -25.015 -7.238 26.254 hybrid contribution -1.055 0.425 0.739 1.356 sum -4.386 -24.590 -6.499 25.810 Atomic orbital electron populations 1.23324 0.76631 1.05535 1.02116 1.86028 1.23306 1.26850 1.88677 1.19289 0.92736 0.84499 0.96789 1.20564 0.91548 0.99065 1.06558 1.21242 1.00402 0.90287 0.97016 1.18951 0.93114 0.92803 1.03968 1.19363 0.99238 0.93256 0.96536 1.23094 0.98040 0.98955 0.97867 1.21186 0.98688 0.87837 0.97033 1.62728 1.23761 1.36681 1.02602 1.21638 0.87868 0.96142 0.96515 0.92291 1.23716 1.00035 0.99541 1.01914 1.21911 0.97758 0.98109 0.96882 1.18908 0.95359 0.91976 0.93829 1.21763 1.19219 1.05752 1.10833 0.92604 1.25928 0.95851 0.96768 1.01220 1.70131 1.33693 1.13229 1.40197 0.85505 0.78274 0.78327 0.79559 1.18595 1.20548 1.20575 1.22208 0.98484 0.95336 0.91519 1.21433 1.00883 0.96395 0.97078 1.21196 0.93869 0.97495 0.97158 1.21354 1.00978 0.91812 1.08523 0.86236 0.92013 0.91859 0.84038 0.84004 0.85811 0.88959 0.89399 0.90227 0.89479 0.93600 0.93652 0.91002 0.97586 1.00293 0.93031 0.91442 0.90470 0.89803 0.90882 0.85594 0.83772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.19 10.49 -92.03 -0.97 -7.16 16 3 C 0.11 2.26 6.69 22.57 0.15 2.41 16 4 C -0.16 -3.08 9.97 22.33 0.22 -2.85 16 5 C -0.07 -1.40 9.64 22.50 0.22 -1.18 16 6 C -0.09 -1.93 5.19 -20.11 -0.10 -2.03 16 7 C -0.08 -1.96 3.05 -17.98 -0.05 -2.01 16 8 C -0.16 -3.51 6.63 25.00 0.17 -3.34 16 9 C 0.08 2.00 5.52 85.40 0.47 2.47 16 10 N -0.54 -17.70 4.77 -875.74 -4.18 -21.88 16 11 C 0.09 3.00 2.68 44.91 0.12 3.12 16 12 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 13 C -0.19 -5.35 7.38 71.98 0.53 -4.82 16 14 C -0.11 -4.52 3.80 30.59 0.12 -4.40 16 15 C 0.04 1.95 4.48 29.85 0.13 2.08 16 16 C -0.54 -30.97 9.10 25.60 0.23 -30.74 16 17 H 0.06 3.09 7.75 -2.91 -0.02 3.07 16 18 C 0.00 -0.01 5.45 84.65 0.46 0.45 16 19 N -0.93 -58.02 13.29 21.45 0.28 -57.74 16 20 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 21 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 C 0.05 1.70 5.20 86.27 0.45 2.15 16 25 C -0.12 -3.31 4.76 29.76 0.14 -3.17 16 26 C -0.08 -1.69 9.55 22.50 0.22 -1.48 16 27 C -0.21 -4.00 9.02 22.33 0.20 -3.80 16 28 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.06 0.59 7.65 -2.39 -0.02 0.57 16 30 H 0.06 0.58 7.66 -2.39 -0.02 0.56 16 31 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 32 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 33 H 0.12 2.31 7.98 -2.91 -0.02 2.29 16 34 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.09 2.05 7.74 -2.39 -0.02 2.03 16 36 H 0.08 1.97 4.65 -2.39 -0.01 1.96 16 37 H 0.09 2.31 2.20 -2.39 -0.01 2.31 16 38 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.04 1.86 8.14 -2.39 -0.02 1.85 16 40 H 0.07 2.84 4.08 -2.39 -0.01 2.83 16 41 H 0.01 0.33 6.64 -2.39 -0.02 0.32 16 42 H -0.02 -1.29 8.13 -2.39 -0.02 -1.31 16 43 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.07 2.68 5.40 -2.38 -0.01 2.67 16 45 H 0.08 2.29 8.08 -2.39 -0.02 2.27 16 46 H 0.08 2.50 3.92 -2.39 -0.01 2.49 16 47 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.13 2.62 7.20 -2.91 -0.02 2.60 16 49 H 0.14 2.13 6.28 -2.91 -0.02 2.11 16 Total: -1.00 -67.95 365.98 2.89 -65.05 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.94 Total: 20.51 kcal Atomic # 6 Polarization: -50.63 SS G_CDS: 4.78 Total: -45.85 kcal Atomic # 7 Polarization: -75.73 SS G_CDS: -3.89 Total: -79.62 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.97 Total: -7.16 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -67.95 2.89 -65.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172510338.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.405 kcal (2) G-P(sol) polarization free energy of solvation -67.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds