Wall clock time and date at job start Tue Mar 31 2020 11:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35905 * 116.99783 * 2 1 4 4 C 1.38742 * 120.09352 * 359.97438 * 3 2 1 5 5 C 1.38001 * 119.87807 * 180.02562 * 4 3 2 6 6 C 1.38548 * 120.29582 * 359.97438 * 5 4 3 7 7 C 1.38263 * 119.92824 * 0.02562 * 6 5 4 8 8 C 1.38413 * 119.90990 * 0.02562 * 7 6 5 9 9 C 1.51385 * 109.75508 * 180.02562 * 7 6 5 10 10 H 1.09004 * 110.30243 * 101.81823 * 9 7 6 11 11 N 1.46892 * 110.30312 * 223.87059 * 9 7 6 12 12 C 1.46902 * 110.99807 * 205.70933 * 11 9 7 13 13 C 1.53005 * 109.46862 * 204.16878 * 12 11 9 14 14 C 1.52998 * 109.47027 * 180.02562 * 13 12 11 15 15 C 1.53007 * 109.47375 * 59.99941 * 14 13 12 16 16 C 1.50697 * 109.47066 * 60.00155 * 15 14 13 17 17 H 1.08010 * 119.99827 * 354.65466 * 16 15 14 18 18 C 1.37877 * 120.00230 * 174.66032 * 16 15 14 19 19 N 1.31509 * 119.99890 * 155.82657 * 18 16 15 20 20 Si 1.86799 * 119.99741 * 335.82925 * 18 16 15 21 21 H 1.48500 * 109.47303 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.47069 * 300.00290 * 20 18 16 23 23 H 1.48505 * 109.47010 * 59.99931 * 20 18 16 24 24 C 1.53000 * 109.46785 * 300.00098 * 15 14 13 25 25 C 1.52998 * 109.47244 * 59.99822 * 24 15 14 26 26 C 1.54343 * 105.25408 * 342.85050 * 9 7 6 27 27 C 1.51386 * 130.33173 * 180.02562 * 6 5 4 28 28 H 1.08999 * 109.47304 * 59.99761 * 1 2 3 29 29 H 1.09004 * 109.46973 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46837 * 299.99582 * 1 2 3 31 31 H 1.07996 * 120.06307 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.85412 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.91054 * 179.97438 * 8 7 6 34 34 H 1.00904 * 111.00101 * 81.76207 * 11 9 7 35 35 H 1.08993 * 109.47591 * 324.16894 * 12 11 9 36 36 H 1.08993 * 109.47132 * 60.00132 * 13 12 11 37 37 H 1.09003 * 109.47480 * 300.00039 * 13 12 11 38 38 H 1.09003 * 109.47200 * 299.99909 * 14 13 12 39 39 H 1.09000 * 109.47730 * 180.02562 * 14 13 12 40 40 H 1.09003 * 109.47117 * 180.02562 * 15 14 13 41 41 H 0.96992 * 120.00437 * 354.92456 * 19 18 16 42 42 H 1.09006 * 109.46686 * 179.97438 * 24 15 14 43 43 H 1.09003 * 109.47569 * 299.99967 * 24 15 14 44 44 H 1.09000 * 109.47730 * 179.97438 * 25 24 15 45 45 H 1.09003 * 109.47200 * 59.99849 * 25 24 15 46 46 H 1.09000 * 110.82472 * 144.54578 * 26 9 7 47 47 H 1.09007 * 110.81657 * 268.09459 * 26 9 7 48 48 H 1.08999 * 110.29885 * 316.09817 * 27 6 5 49 49 H 1.08998 * 110.30158 * 78.14710 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2922 2.3757 -0.0005 5 6 1.9232 3.6030 -0.0011 6 6 3.3067 3.6775 -0.0005 7 6 4.0600 2.5181 0.0000 8 6 3.4299 1.2857 -0.0005 9 6 5.5335 2.8652 0.0012 10 1 5.9489 2.7481 1.0021 11 7 6.2581 2.0154 -0.9531 12 6 7.6689 1.8761 -0.5681 13 6 8.5037 1.5366 -1.8045 14 6 9.9730 1.3909 -1.4035 15 6 10.1113 0.2700 -0.3712 16 6 9.6225 -1.0249 -0.9673 17 1 9.1710 -1.0313 -1.9484 18 6 9.7517 -2.2015 -0.2602 19 7 8.9488 -3.2120 -0.5128 20 14 11.0669 -2.3601 1.0568 21 1 10.9974 -3.7128 1.6655 22 1 12.4056 -2.1597 0.4460 23 1 10.8430 -1.3335 2.1062 24 6 9.2764 0.6096 0.8651 25 6 7.8071 0.7553 0.4641 26 6 5.6028 4.3432 -0.4378 27 6 4.2230 4.8825 -0.0004 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2135 2.3221 -0.0014 32 1 1.3361 4.5095 -0.0019 33 1 4.0182 0.3800 -0.0005 34 1 6.1734 2.3732 -1.8927 35 1 8.0222 2.8128 -0.1372 36 1 8.4050 2.3348 -2.5400 37 1 8.1505 0.5997 -2.2355 38 1 10.3266 2.3275 -0.9723 39 1 10.5680 1.1494 -2.2843 40 1 11.1580 0.1665 -0.0852 41 1 8.2195 -3.1061 -1.1434 42 1 9.3745 -0.1892 1.6004 43 1 9.6299 1.5462 1.2963 44 1 7.2122 0.9967 1.3449 45 1 7.4535 -0.1814 0.0330 46 1 6.4069 4.8644 0.0817 47 1 5.7236 4.4212 -1.5184 48 1 3.8658 5.6292 -0.7096 49 1 4.2844 5.3109 1.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328962.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:34 Heat of formation + Delta-G solvation = -28.087404 kcal Electronic energy + Delta-G solvation = -26843.308325 eV Core-core repulsion = 23348.315216 eV Total energy + Delta-G solvation = -3494.993108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.55918 -38.99961 -37.93033 -35.49895 -33.44874 -31.99027 -31.06912 -29.84844 -28.67340 -28.54121 -27.13306 -25.32382 -23.73524 -22.82934 -21.93966 -20.91940 -20.59668 -20.14206 -18.69624 -17.71898 -16.64319 -16.34529 -15.95533 -15.71919 -15.36377 -14.97432 -14.54961 -14.33570 -13.64599 -13.57365 -13.49738 -13.35746 -13.11431 -12.84082 -12.70804 -12.42619 -12.09337 -12.02904 -11.85979 -11.65535 -11.43802 -11.35147 -11.08034 -11.00927 -10.75269 -10.61644 -10.53553 -10.41702 -10.07516 -10.02610 -9.64620 -9.25208 -9.13551 -8.76629 -8.68199 -8.06175 -8.02142 -7.93797 -6.30405 -3.87041 1.33492 1.43878 3.20353 3.48230 3.51847 3.69915 3.71924 4.31837 4.49894 4.60484 4.62781 4.78595 4.89207 4.99007 5.00353 5.05942 5.19442 5.31240 5.33248 5.37298 5.44499 5.50006 5.60257 5.63444 5.70814 5.78973 5.82048 5.93261 5.98516 6.16161 6.17798 6.28905 6.33195 6.37146 6.37957 6.45232 6.50959 6.56551 6.69685 6.74108 6.75529 6.88851 7.05803 7.21116 7.36003 7.40862 7.42980 7.58387 7.62704 7.76096 8.35888 8.53857 9.06562 9.75756 11.05596 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014548 B = 0.003650 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.211766 B = 7669.634898 C = 9043.694811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.315 6.315 3 C 0.121 3.879 4 C -0.210 4.210 5 C -0.075 4.075 6 C -0.139 4.139 7 C -0.038 4.038 8 C -0.112 4.112 9 C 0.126 3.874 10 H 0.095 0.905 11 N -0.675 5.675 12 C 0.099 3.901 13 C -0.107 4.107 14 C -0.094 4.094 15 C 0.018 3.982 16 C -0.592 4.592 17 H 0.058 0.942 18 C 0.037 3.963 19 N -0.902 5.902 20 Si 1.034 2.966 21 H -0.289 1.289 22 H -0.287 1.287 23 H -0.279 1.279 24 C -0.114 4.114 25 C -0.088 4.088 26 C -0.148 4.148 27 C -0.072 4.072 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.125 0.875 32 H 0.118 0.882 33 H 0.137 0.863 34 H 0.338 0.662 35 H 0.029 0.971 36 H 0.034 0.966 37 H 0.081 0.919 38 H 0.031 0.969 39 H 0.050 0.950 40 H 0.016 0.984 41 H 0.268 0.732 42 H 0.054 0.946 43 H 0.024 0.976 44 H 0.032 0.968 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.647 15.846 1.427 21.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.228 6.228 3 C 0.076 3.924 4 C -0.229 4.229 5 C -0.093 4.093 6 C -0.140 4.140 7 C -0.039 4.039 8 C -0.130 4.130 9 C 0.015 3.985 10 H 0.113 0.887 11 N -0.304 5.304 12 C -0.010 4.010 13 C -0.145 4.145 14 C -0.133 4.133 15 C -0.001 4.001 16 C -0.629 4.629 17 H 0.076 0.924 18 C -0.169 4.169 19 N -0.536 5.536 20 Si 0.863 3.137 21 H -0.215 1.215 22 H -0.213 1.213 23 H -0.206 1.206 24 C -0.152 4.152 25 C -0.126 4.126 26 C -0.187 4.187 27 C -0.109 4.109 28 H 0.071 0.929 29 H 0.117 0.883 30 H 0.071 0.929 31 H 0.143 0.857 32 H 0.136 0.864 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.099 0.901 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.034 0.966 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.043 0.957 44 H 0.050 0.950 45 H 0.103 0.897 46 H 0.094 0.906 47 H 0.092 0.908 48 H 0.089 0.911 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.068 13.966 2.782 20.017 hybrid contribution -0.737 2.078 -1.295 2.557 sum -14.804 16.044 1.487 21.881 Atomic orbital electron populations 1.23016 0.78766 1.03800 1.01019 1.86115 1.21006 1.26903 1.88825 1.18886 0.92217 0.84034 0.97294 1.21039 0.99610 0.92200 1.10005 1.20260 0.93011 0.96825 0.99236 1.20466 0.93337 0.95807 1.04361 1.20239 0.95301 0.91886 0.96429 1.19917 0.90703 0.98728 1.03695 1.21098 0.89996 0.89521 0.97848 0.88728 1.60473 1.13100 1.52226 1.04619 1.21521 0.85429 0.97132 0.96898 1.21574 0.96187 1.01250 0.95474 1.21345 0.94695 0.97700 0.99523 1.18986 0.94418 0.94941 0.91800 1.21850 1.44318 0.91987 1.04790 0.92417 1.25591 0.98915 0.92829 0.99536 1.70826 1.14743 1.34936 1.33073 0.84182 0.76854 0.75797 0.76863 1.21511 1.21338 1.20570 1.21862 0.95763 0.98165 0.99457 1.21323 0.96200 0.99284 0.95774 1.23071 0.97107 0.96958 1.01568 1.20898 0.93163 0.95244 1.01611 0.92872 0.88345 0.92885 0.85700 0.86379 0.84528 0.84314 0.95265 0.94679 0.90091 0.94975 0.93107 0.96625 0.92179 0.92704 0.95744 0.94966 0.89720 0.90587 0.90817 0.91148 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.27 10.50 -19.44 -0.20 -4.47 16 3 C 0.12 1.68 6.68 -39.26 -0.26 1.41 16 4 C -0.21 -2.42 9.04 -39.48 -0.36 -2.78 16 5 C -0.08 -0.84 10.03 -39.55 -0.40 -1.23 16 6 C -0.14 -1.69 6.14 -104.16 -0.64 -2.33 16 7 C -0.04 -0.53 5.79 -104.21 -0.60 -1.13 16 8 C -0.11 -1.72 9.94 -39.39 -0.39 -2.11 16 9 C 0.13 1.71 2.94 -67.83 -0.20 1.52 16 10 H 0.09 1.37 7.13 -51.93 -0.37 1.00 16 11 N -0.67 -10.49 6.09 -99.86 -0.61 -11.10 16 12 C 0.10 1.72 2.35 -67.71 -0.16 1.56 16 13 C -0.11 -1.98 4.98 -26.73 -0.13 -2.12 16 14 C -0.09 -1.89 5.42 -26.73 -0.14 -2.03 16 15 C 0.02 0.41 2.18 -91.77 -0.20 0.21 16 16 C -0.59 -16.07 6.92 -34.44 -0.24 -16.31 16 17 H 0.06 1.69 6.76 -52.48 -0.35 1.34 16 18 C 0.04 1.05 5.24 -17.82 -0.09 0.96 16 19 N -0.90 -27.56 13.70 55.43 0.76 -26.81 16 20 Si 1.03 25.38 26.53 -169.99 -4.51 20.87 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.42 6.02 56.52 0.34 -6.08 16 24 C -0.11 -2.48 5.19 -26.73 -0.14 -2.62 16 25 C -0.09 -1.80 5.18 -26.73 -0.14 -1.94 16 26 C -0.15 -1.60 6.71 -25.26 -0.17 -1.77 16 27 C -0.07 -0.71 6.77 -26.78 -0.18 -0.89 16 28 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 29 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 31 H 0.13 1.12 6.31 -52.49 -0.33 0.78 16 32 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 33 H 0.14 2.33 8.06 -52.49 -0.42 1.91 16 34 H 0.34 4.89 7.74 -39.29 -0.30 4.59 16 35 H 0.03 0.48 7.85 -51.93 -0.41 0.08 16 36 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 37 H 0.08 1.74 6.52 -51.93 -0.34 1.40 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.02 0.37 6.72 -51.93 -0.35 0.03 16 41 H 0.27 8.22 8.73 -40.82 -0.36 7.87 16 42 H 0.05 1.28 5.46 -51.93 -0.28 1.00 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.03 0.62 7.43 -51.93 -0.39 0.23 16 45 H 0.08 2.06 7.22 -51.93 -0.37 1.69 16 46 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.07 0.78 7.60 -51.92 -0.39 0.39 16 48 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 370.38 15.07 5.58 5.58 Total: -1.00 -30.15 370.38 -10.57 -40.72 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -8.13 Total: 5.56 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: -3.46 Total: -30.36 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.15 Total: -37.90 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.20 Total: -4.47 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -4.51 Total: 20.87 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.15 -10.57 -40.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328962.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.635 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds