Wall clock time and date at job start Tue Mar 31 2020 11:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35905 * 116.99783 * 2 1 4 4 C 1.38742 * 120.09352 * 359.97438 * 3 2 1 5 5 C 1.38001 * 119.87807 * 180.02562 * 4 3 2 6 6 C 1.38548 * 120.29582 * 359.97438 * 5 4 3 7 7 C 1.38263 * 119.92824 * 0.02562 * 6 5 4 8 8 C 1.38413 * 119.90990 * 0.02562 * 7 6 5 9 9 C 1.51385 * 109.75508 * 180.02562 * 7 6 5 10 10 H 1.09004 * 110.30243 * 101.81823 * 9 7 6 11 11 N 1.46892 * 110.30312 * 223.87059 * 9 7 6 12 12 C 1.46902 * 110.99807 * 205.70933 * 11 9 7 13 13 C 1.53005 * 109.46862 * 204.16878 * 12 11 9 14 14 C 1.52998 * 109.47027 * 180.02562 * 13 12 11 15 15 C 1.53007 * 109.47375 * 59.99941 * 14 13 12 16 16 C 1.50697 * 109.47066 * 60.00155 * 15 14 13 17 17 H 1.08010 * 119.99827 * 354.65466 * 16 15 14 18 18 C 1.37877 * 120.00230 * 174.66032 * 16 15 14 19 19 N 1.31509 * 119.99890 * 155.82657 * 18 16 15 20 20 Si 1.86799 * 119.99741 * 335.82925 * 18 16 15 21 21 H 1.48500 * 109.47303 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.47069 * 300.00290 * 20 18 16 23 23 H 1.48505 * 109.47010 * 59.99931 * 20 18 16 24 24 C 1.53000 * 109.46785 * 300.00098 * 15 14 13 25 25 C 1.52998 * 109.47244 * 59.99822 * 24 15 14 26 26 C 1.54343 * 105.25408 * 342.85050 * 9 7 6 27 27 C 1.51386 * 130.33173 * 180.02562 * 6 5 4 28 28 H 1.08999 * 109.47304 * 59.99761 * 1 2 3 29 29 H 1.09004 * 109.46973 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46837 * 299.99582 * 1 2 3 31 31 H 1.07996 * 120.06307 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.85412 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.91054 * 179.97438 * 8 7 6 34 34 H 1.00904 * 111.00101 * 81.76207 * 11 9 7 35 35 H 1.08993 * 109.47591 * 324.16894 * 12 11 9 36 36 H 1.08993 * 109.47132 * 60.00132 * 13 12 11 37 37 H 1.09003 * 109.47480 * 300.00039 * 13 12 11 38 38 H 1.09003 * 109.47200 * 299.99909 * 14 13 12 39 39 H 1.09000 * 109.47730 * 180.02562 * 14 13 12 40 40 H 1.09003 * 109.47117 * 180.02562 * 15 14 13 41 41 H 0.96992 * 120.00437 * 354.92456 * 19 18 16 42 42 H 1.09006 * 109.46686 * 179.97438 * 24 15 14 43 43 H 1.09003 * 109.47569 * 299.99967 * 24 15 14 44 44 H 1.09000 * 109.47730 * 179.97438 * 25 24 15 45 45 H 1.09003 * 109.47200 * 59.99849 * 25 24 15 46 46 H 1.09000 * 110.82472 * 144.54578 * 26 9 7 47 47 H 1.09007 * 110.81657 * 268.09459 * 26 9 7 48 48 H 1.08999 * 110.29885 * 316.09817 * 27 6 5 49 49 H 1.08998 * 110.30158 * 78.14710 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2922 2.3757 -0.0005 5 6 1.9232 3.6030 -0.0011 6 6 3.3067 3.6775 -0.0005 7 6 4.0600 2.5181 0.0000 8 6 3.4299 1.2857 -0.0005 9 6 5.5335 2.8652 0.0012 10 1 5.9489 2.7481 1.0021 11 7 6.2581 2.0154 -0.9531 12 6 7.6689 1.8761 -0.5681 13 6 8.5037 1.5366 -1.8045 14 6 9.9730 1.3909 -1.4035 15 6 10.1113 0.2700 -0.3712 16 6 9.6225 -1.0249 -0.9673 17 1 9.1710 -1.0313 -1.9484 18 6 9.7517 -2.2015 -0.2602 19 7 8.9488 -3.2120 -0.5128 20 14 11.0669 -2.3601 1.0568 21 1 10.9974 -3.7128 1.6655 22 1 12.4056 -2.1597 0.4460 23 1 10.8430 -1.3335 2.1062 24 6 9.2764 0.6096 0.8651 25 6 7.8071 0.7553 0.4641 26 6 5.6028 4.3432 -0.4378 27 6 4.2230 4.8825 -0.0004 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2135 2.3221 -0.0014 32 1 1.3361 4.5095 -0.0019 33 1 4.0182 0.3800 -0.0005 34 1 6.1734 2.3732 -1.8927 35 1 8.0222 2.8128 -0.1372 36 1 8.4050 2.3348 -2.5400 37 1 8.1505 0.5997 -2.2355 38 1 10.3266 2.3275 -0.9723 39 1 10.5680 1.1494 -2.2843 40 1 11.1580 0.1665 -0.0852 41 1 8.2195 -3.1061 -1.1434 42 1 9.3745 -0.1892 1.6004 43 1 9.6299 1.5462 1.2963 44 1 7.2122 0.9967 1.3449 45 1 7.4535 -0.1814 0.0330 46 1 6.4069 4.8644 0.0817 47 1 5.7236 4.4212 -1.5184 48 1 3.8658 5.6292 -0.7096 49 1 4.2844 5.3109 1.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328962.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:34 Heat of formation + Delta-G solvation = -46.068499 kcal Electronic energy + Delta-G solvation = -26844.088043 eV Core-core repulsion = 23348.315216 eV Total energy + Delta-G solvation = -3495.772827 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.52398 -40.16035 -39.29575 -36.68670 -34.88510 -33.76289 -32.17710 -31.50495 -30.07765 -29.42448 -28.07750 -26.61247 -25.50591 -23.75960 -23.51761 -22.19720 -21.67490 -21.31748 -20.63589 -18.81426 -18.48746 -17.28712 -17.09653 -16.64242 -16.40490 -16.15850 -15.95073 -15.51517 -15.44524 -15.23375 -14.79851 -14.52000 -14.35621 -14.03686 -13.73427 -13.67045 -13.51545 -13.19157 -12.97229 -12.85066 -12.71834 -12.56975 -12.40960 -12.32298 -12.28584 -12.14553 -11.85745 -11.76273 -11.60781 -11.52627 -11.42137 -11.06428 -10.85270 -10.58342 -10.16077 -9.78566 -9.23212 -8.97113 -8.59681 -6.14903 0.36174 0.46720 1.48169 1.54504 1.73358 2.35915 2.57121 2.73626 3.13139 3.23162 3.56087 3.67246 3.92744 3.95619 4.05000 4.09238 4.21362 4.25470 4.34554 4.35804 4.37171 4.46977 4.52426 4.60169 4.62129 4.68523 4.70047 4.75557 4.81384 4.85864 4.86937 4.88702 4.96302 5.01130 5.14220 5.16034 5.18116 5.24994 5.36760 5.40518 5.46080 5.48585 5.61927 5.66874 5.73510 5.81963 5.83875 6.16880 6.26319 6.32349 6.49398 6.55640 6.75737 7.55878 8.74412 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014548 B = 0.003650 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.211766 B = 7669.634898 C = 9043.694811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.347 6.347 3 C 0.105 3.895 4 C -0.204 4.204 5 C -0.071 4.071 6 C -0.140 4.140 7 C -0.057 4.057 8 C -0.147 4.147 9 C 0.124 3.876 10 H 0.083 0.917 11 N -0.690 5.690 12 C 0.113 3.887 13 C -0.102 4.102 14 C -0.093 4.093 15 C 0.010 3.990 16 C -0.579 4.579 17 H 0.019 0.981 18 C -0.019 4.019 19 N -0.941 5.941 20 Si 1.074 2.926 21 H -0.297 1.297 22 H -0.266 1.266 23 H -0.251 1.251 24 C -0.112 4.112 25 C -0.082 4.082 26 C -0.139 4.139 27 C -0.065 4.065 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.155 0.845 32 H 0.154 0.846 33 H 0.097 0.903 34 H 0.345 0.655 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.036 0.964 38 H 0.068 0.932 39 H 0.044 0.956 40 H 0.020 0.980 41 H 0.249 0.751 42 H 0.034 0.966 43 H 0.061 0.939 44 H 0.040 0.960 45 H 0.030 0.970 46 H 0.091 0.909 47 H 0.078 0.922 48 H 0.092 0.908 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.008 20.480 2.388 25.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.262 6.262 3 C 0.060 3.940 4 C -0.223 4.223 5 C -0.089 4.089 6 C -0.141 4.141 7 C -0.058 4.058 8 C -0.166 4.166 9 C 0.014 3.986 10 H 0.101 0.899 11 N -0.321 5.321 12 C 0.004 3.996 13 C -0.140 4.140 14 C -0.131 4.131 15 C -0.009 4.009 16 C -0.617 4.617 17 H 0.037 0.963 18 C -0.217 4.217 19 N -0.577 5.577 20 Si 0.897 3.103 21 H -0.224 1.224 22 H -0.192 1.192 23 H -0.175 1.175 24 C -0.151 4.151 25 C -0.120 4.120 26 C -0.178 4.178 27 C -0.103 4.103 28 H 0.086 0.914 29 H 0.130 0.870 30 H 0.087 0.913 31 H 0.172 0.828 32 H 0.172 0.828 33 H 0.115 0.885 34 H 0.164 0.836 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.038 0.962 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.048 0.952 46 H 0.110 0.890 47 H 0.097 0.903 48 H 0.111 0.889 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.435 18.632 3.728 23.862 hybrid contribution -0.758 0.604 -1.664 1.926 sum -15.193 19.236 2.064 24.599 Atomic orbital electron populations 1.23328 0.76321 1.05345 1.02430 1.86072 1.23706 1.27425 1.88970 1.19039 0.91910 0.85150 0.97856 1.21370 1.00961 0.91374 1.08571 1.20705 0.92952 0.97872 0.97331 1.20827 0.94059 0.95846 1.03318 1.20373 0.95956 0.92142 0.97299 1.19862 0.91741 0.98139 1.06831 1.21170 0.89396 0.91354 0.96699 0.89915 1.60303 1.12245 1.54047 1.05528 1.21276 0.86474 0.96584 0.95303 1.21484 0.95595 1.00216 0.96671 1.21317 0.95458 0.97877 0.98461 1.19050 0.94537 0.94006 0.93328 1.22031 1.42359 0.94281 1.03039 0.96308 1.26943 1.00177 0.92826 1.01710 1.70961 1.15852 1.36352 1.34531 0.83676 0.75138 0.76151 0.75368 1.22403 1.19171 1.17539 1.21789 0.95899 0.99189 0.98185 1.21202 0.95736 0.98188 0.96916 1.23025 0.98439 0.94326 1.02029 1.20941 0.91724 0.94497 1.03097 0.91430 0.86964 0.91298 0.82795 0.82813 0.88468 0.83551 0.92576 0.91330 0.94565 0.91325 0.93690 0.96163 0.94256 0.94771 0.92032 0.94117 0.95154 0.89039 0.90325 0.88906 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.35 -9.86 10.50 -92.48 -0.97 -10.83 16 3 C 0.11 3.01 6.68 22.48 0.15 3.16 16 4 C -0.20 -4.32 9.04 22.33 0.20 -4.12 16 5 C -0.07 -1.35 10.03 22.29 0.22 -1.12 16 6 C -0.14 -3.06 6.14 -19.57 -0.12 -3.18 16 7 C -0.06 -1.61 5.79 -19.60 -0.11 -1.72 16 8 C -0.15 -4.85 9.94 22.40 0.22 -4.63 16 9 C 0.12 3.27 2.94 44.84 0.13 3.40 16 10 H 0.08 2.34 7.13 -2.38 -0.02 2.33 16 11 N -0.69 -21.66 6.09 -469.85 -2.86 -24.52 16 12 C 0.11 3.81 2.35 44.92 0.11 3.92 16 13 C -0.10 -3.72 4.98 30.60 0.15 -3.57 16 14 C -0.09 -3.55 5.42 30.60 0.17 -3.38 16 15 C 0.01 0.45 2.18 -11.54 -0.03 0.42 16 16 C -0.58 -32.87 6.92 25.60 0.18 -32.69 16 17 H 0.02 1.18 6.76 -2.91 -0.02 1.16 16 18 C -0.02 -1.11 5.24 84.66 0.44 -0.66 16 19 N -0.94 -61.18 13.70 21.45 0.29 -60.88 16 20 Si 1.07 51.75 26.53 68.60 1.82 53.57 16 21 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.25 -10.88 6.02 99.48 0.60 -10.28 16 24 C -0.11 -4.76 5.19 30.59 0.16 -4.60 16 25 C -0.08 -3.44 5.18 30.59 0.16 -3.29 16 26 C -0.14 -2.54 6.71 31.55 0.21 -2.33 16 27 C -0.07 -1.03 6.77 30.56 0.21 -0.82 16 28 H 0.07 0.90 7.66 -2.39 -0.02 0.88 16 29 H 0.11 1.46 8.14 -2.39 -0.02 1.45 16 30 H 0.07 0.89 7.67 -2.39 -0.02 0.88 16 31 H 0.15 2.26 6.31 -2.91 -0.02 2.24 16 32 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 33 H 0.10 3.83 8.06 -2.91 -0.02 3.81 16 34 H 0.34 9.87 7.74 -89.69 -0.69 9.18 16 35 H 0.06 1.65 7.85 -2.39 -0.02 1.63 16 36 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 37 H 0.04 1.64 6.52 -2.39 -0.02 1.62 16 38 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.02 0.92 6.72 -2.39 -0.02 0.91 16 41 H 0.25 16.62 8.73 -92.71 -0.81 15.81 16 42 H 0.03 1.56 5.46 -2.38 -0.01 1.55 16 43 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.04 1.60 7.43 -2.39 -0.02 1.58 16 45 H 0.03 1.58 7.22 -2.39 -0.02 1.56 16 46 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.08 1.38 7.60 -2.38 -0.02 1.36 16 48 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -72.35 370.38 1.94 -70.41 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.10 Total: 26.05 kcal Atomic # 6 Polarization: -57.35 SS G_CDS: 3.56 Total: -53.78 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -2.57 Total: -85.41 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -0.97 Total: -10.83 kcal Atomic # 14 Polarization: 51.75 SS G_CDS: 1.82 Total: 53.57 kcal Total: -72.35 1.94 -70.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328962.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.338 kcal (2) G-P(sol) polarization free energy of solvation -72.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds