Wall clock time and date at job start Tue Mar 31 2020 12:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00027 * 2 1 4 4 H 1.48506 * 109.47050 * 179.97438 * 3 2 1 5 5 H 1.48489 * 109.47354 * 299.99910 * 3 2 1 6 6 H 1.48507 * 109.47118 * 60.00174 * 3 2 1 7 7 C 1.37878 * 119.99516 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99522 * 180.02562 * 7 2 1 9 9 C 1.50690 * 120.00378 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47193 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46953 * 300.00111 * 10 9 7 12 12 C 1.52999 * 109.47254 * 299.99464 * 11 10 9 13 13 N 1.46896 * 109.47185 * 179.97438 * 12 11 10 14 14 C 1.46407 * 110.99923 * 175.00201 * 13 12 11 15 15 C 1.53389 * 108.72210 * 288.16779 * 14 13 12 16 16 C 1.53090 * 107.87501 * 291.83700 * 15 14 13 17 17 C 1.50677 * 109.58424 * 46.86913 * 16 15 14 18 18 C 1.38691 * 118.35819 * 164.91176 * 17 16 15 19 19 C 1.38694 * 118.81136 * 179.67850 * 18 17 16 20 20 C 1.38072 * 118.97766 * 0.17431 * 19 18 17 21 21 C 1.50702 * 119.58762 * 179.82405 * 20 19 18 22 22 N 1.46892 * 109.47380 * 94.99984 * 21 20 19 23 23 N 1.31608 * 120.82046 * 359.54735 * 20 19 18 24 24 C 1.33268 * 122.22718 * 0.66095 * 23 20 19 25 25 C 1.53004 * 109.46703 * 60.00383 * 12 11 10 26 26 C 1.52998 * 109.46953 * 299.99802 * 25 12 11 27 27 H 0.97002 * 120.00424 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47416 * 299.99624 * 9 7 2 29 29 H 1.09003 * 109.47443 * 180.02562 * 10 9 7 30 30 H 1.08999 * 109.47419 * 60.00204 * 10 9 7 31 31 H 1.09006 * 109.46659 * 180.02562 * 11 10 9 32 32 H 1.08994 * 109.47597 * 60.00072 * 11 10 9 33 33 H 1.09002 * 109.47603 * 300.00587 * 12 11 10 34 34 H 1.09000 * 109.59622 * 168.39593 * 14 13 12 35 35 H 1.09002 * 109.71992 * 48.01324 * 14 13 12 36 36 H 1.08995 * 109.77900 * 172.23794 * 15 14 13 37 37 H 1.09002 * 109.82261 * 51.45776 * 15 14 13 38 38 H 1.08991 * 109.45337 * 286.83660 * 16 15 14 39 39 H 1.09003 * 109.44793 * 166.90419 * 16 15 14 40 40 H 1.07997 * 120.59083 * 359.70773 * 18 17 16 41 41 H 1.08002 * 120.50606 * 179.89187 * 19 18 17 42 42 H 1.09008 * 109.47008 * 214.99488 * 21 20 19 43 43 H 1.08991 * 109.47395 * 334.99283 * 21 20 19 44 44 H 1.00894 * 111.00445 * 56.04590 * 22 21 20 45 45 H 1.00906 * 111.00034 * 179.97438 * 22 21 20 46 46 H 1.09003 * 109.47443 * 59.99865 * 25 12 11 47 47 H 1.09003 * 109.47142 * 180.02562 * 25 12 11 48 48 H 1.09002 * 109.47295 * 299.99760 * 26 25 12 49 49 H 1.09006 * 109.47173 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 3.1248 -3.5810 -1.2487 12 6 2.2452 -3.6621 -2.4979 13 7 3.0897 -3.5837 -3.6973 14 6 2.2952 -3.7765 -4.9119 15 6 1.8793 -5.2504 -4.9993 16 6 3.1401 -6.0800 -5.2554 17 6 4.2318 -5.6440 -4.3127 18 6 5.3374 -6.4672 -4.1593 19 6 6.3509 -6.0717 -3.2991 20 6 6.2246 -4.8752 -2.6219 21 6 7.3158 -4.4340 -1.6807 22 7 8.2389 -3.5364 -2.3876 23 7 5.1656 -4.1125 -2.7921 24 6 4.1667 -4.4547 -3.6052 25 6 1.2510 -2.4992 -2.4979 26 6 0.3714 -2.5802 -1.2487 27 1 -0.4851 0.8400 0.0004 28 1 0.6239 -2.5567 0.8903 29 1 1.7002 -4.6061 0.0001 30 1 2.8718 -3.6044 0.8905 31 1 3.8328 -4.4099 -1.2489 32 1 3.6698 -2.6371 -1.2487 33 1 1.7001 -4.6061 -2.4980 34 1 2.8922 -3.5127 -5.7849 35 1 1.4059 -3.1474 -4.8735 36 1 1.1749 -5.3868 -5.8198 37 1 1.4178 -5.5604 -4.0618 38 1 3.4688 -5.9329 -6.2841 39 1 2.9197 -7.1350 -5.0925 40 1 5.4080 -7.3991 -4.7004 41 1 7.2233 -6.6925 -3.1577 42 1 6.8746 -3.9080 -0.8340 43 1 7.8611 -5.3069 -1.3220 44 1 7.7461 -2.7510 -2.7854 45 1 8.9801 -3.2262 -1.7772 46 1 1.7960 -1.5552 -2.4979 47 1 0.6240 -2.5572 -3.3877 48 1 -0.1737 -3.5242 -1.2487 49 1 -0.3367 -1.7514 -1.2485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329923.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:37 Heat of formation + Delta-G solvation = 37.849549 kcal Electronic energy + Delta-G solvation = -28108.512440 eV Core-core repulsion = 24648.671323 eV Total energy + Delta-G solvation = -3459.841116 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.201 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.10040 -38.44006 -36.75629 -34.53321 -33.95975 -32.13942 -30.95253 -30.46048 -29.32455 -28.42157 -26.12072 -24.83081 -24.07064 -23.05320 -22.07194 -21.33230 -20.94157 -19.43189 -18.46353 -16.86162 -16.50782 -15.92717 -15.61426 -15.50798 -15.16120 -14.67744 -14.63454 -14.26035 -13.80761 -13.75723 -13.60116 -13.14928 -13.00065 -12.82409 -12.67375 -12.51573 -12.17003 -11.81838 -11.60454 -11.52522 -11.20791 -10.95541 -10.86313 -10.82106 -10.63163 -10.52014 -10.30882 -10.01025 -9.69504 -9.52467 -9.33719 -9.20570 -8.87049 -8.77328 -8.67173 -8.49829 -8.19063 -7.70079 -5.89447 -3.92210 1.22604 1.44075 3.35226 3.43596 3.48608 3.64483 3.82458 4.52383 4.54910 4.66181 4.76589 4.81505 4.85471 4.99134 5.01806 5.26429 5.36795 5.41528 5.45336 5.53046 5.59339 5.67830 5.68853 5.75191 5.79051 5.82347 5.93505 6.05464 6.14372 6.24877 6.31556 6.36475 6.52316 6.53903 6.58685 6.63707 6.79167 6.79922 6.91043 6.99733 7.13956 7.29677 7.34884 7.42589 7.46409 7.57298 7.68347 7.82588 7.99827 8.22137 8.38136 8.57509 9.10130 9.70699 11.16787 Molecular weight = 315.20amu Principal moments of inertia in cm(-1) A = 0.013126 B = 0.005063 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.578515 B = 5529.336053 C = 6768.058932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.883 3.117 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.287 1.287 7 C -0.493 4.493 8 H 0.056 0.944 9 C 0.043 3.957 10 C -0.107 4.107 11 C -0.091 4.091 12 C 0.106 3.894 13 N -0.486 5.486 14 C 0.057 3.943 15 C -0.161 4.161 16 C -0.070 4.070 17 C -0.177 4.177 18 C -0.065 4.065 19 C -0.180 4.180 20 C 0.144 3.856 21 C 0.113 3.887 22 N -0.845 5.845 23 N -0.468 5.468 24 C 0.336 3.664 25 C -0.091 4.091 26 C -0.106 4.106 27 H 0.257 0.743 28 H 0.023 0.977 29 H 0.027 0.973 30 H 0.046 0.954 31 H 0.039 0.961 32 H 0.085 0.915 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.050 0.950 43 H 0.084 0.916 44 H 0.348 0.652 45 H 0.343 0.657 46 H 0.081 0.919 47 H 0.033 0.967 48 H 0.011 0.989 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.685 -12.895 -9.485 18.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.140 4.140 3 Si 0.712 3.288 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.531 4.531 8 H 0.074 0.926 9 C 0.025 3.975 10 C -0.145 4.145 11 C -0.128 4.128 12 C 0.002 3.998 13 N -0.202 5.202 14 C -0.070 4.070 15 C -0.200 4.200 16 C -0.108 4.108 17 C -0.183 4.183 18 C -0.092 4.092 19 C -0.202 4.202 20 C 0.002 3.998 21 C -0.018 4.018 22 N -0.375 5.375 23 N -0.180 5.180 24 C 0.107 3.893 25 C -0.129 4.129 26 C -0.144 4.144 27 H 0.067 0.933 28 H 0.041 0.959 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.052 0.948 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.068 0.932 43 H 0.102 0.898 44 H 0.161 0.839 45 H 0.155 0.845 46 H 0.100 0.900 47 H 0.051 0.949 48 H 0.030 0.970 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.756 -12.093 -9.514 17.703 hybrid contribution -0.016 0.097 0.111 0.148 sum 8.740 -11.996 -9.402 17.570 Atomic orbital electron populations 1.69872 1.05796 1.25942 1.51780 1.24912 0.94725 0.98735 0.95594 0.86669 0.80356 0.84438 0.77365 1.19864 1.21189 1.21347 1.21180 0.92814 0.90264 1.48835 0.92588 1.18699 0.92621 0.92218 0.93946 1.21598 0.98257 0.98300 0.96354 1.21573 0.96346 1.02449 0.92466 1.21771 0.92719 0.98148 0.87198 1.57906 1.09130 1.48565 1.04612 1.22278 0.98189 0.95159 0.91416 1.22233 0.97388 0.97310 1.03033 1.20423 0.92828 0.99796 0.97710 1.20695 0.98451 0.95036 1.04148 1.21297 0.92496 0.98752 0.96637 1.21718 1.00142 0.98858 0.99452 1.20817 0.92403 0.91026 0.95525 1.20580 0.90558 0.97395 0.93265 1.58763 1.15099 1.24154 1.39510 1.67446 0.99930 1.32734 1.17848 1.19240 0.91625 0.87154 0.91305 1.21496 0.95919 0.98133 0.97317 1.21517 0.98650 0.99324 0.94933 0.93338 0.95876 0.95414 0.93504 0.94242 0.89677 0.94777 0.90603 0.88677 0.90495 0.90975 0.90695 0.90754 0.85410 0.85296 0.93205 0.89817 0.83870 0.84460 0.90023 0.94851 0.97019 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.30 11.32 55.43 0.63 -24.68 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 3 Si 0.88 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.49 -13.25 6.61 -34.44 -0.23 -13.48 16 8 H 0.06 1.54 6.71 -52.48 -0.35 1.18 16 9 C 0.04 1.08 2.59 -91.78 -0.24 0.84 16 10 C -0.11 -2.31 5.41 -26.73 -0.14 -2.45 16 11 C -0.09 -1.86 3.83 -26.73 -0.10 -1.96 16 12 C 0.11 2.01 1.85 -67.71 -0.12 1.89 16 13 N -0.49 -8.41 4.51 -165.80 -0.75 -9.15 16 14 C 0.06 0.80 5.67 -3.89 -0.02 0.78 16 15 C -0.16 -1.88 6.04 -26.48 -0.16 -2.04 16 16 C -0.07 -0.77 5.83 -27.85 -0.16 -0.93 16 17 C -0.18 -2.45 5.74 -104.35 -0.60 -3.05 16 18 C -0.07 -0.79 9.77 -39.25 -0.38 -1.18 16 19 C -0.18 -2.26 9.73 -39.47 -0.38 -2.64 16 20 C 0.14 2.09 6.29 -82.75 -0.52 1.57 16 21 C 0.11 1.38 7.09 -4.98 -0.04 1.35 16 22 N -0.84 -9.59 9.61 -11.41 -0.11 -9.70 16 23 N -0.47 -8.03 7.35 -8.73 -0.06 -8.09 16 24 C 0.34 5.60 5.37 -154.67 -0.83 4.77 16 25 C -0.09 -1.90 4.91 -26.73 -0.13 -2.03 16 26 C -0.11 -2.46 5.24 -26.73 -0.14 -2.60 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.04 0.79 5.89 -51.93 -0.31 0.48 16 32 H 0.08 1.98 6.59 -51.93 -0.34 1.64 16 33 H 0.03 0.64 6.34 -51.93 -0.33 0.31 16 34 H 0.08 0.99 8.11 -51.93 -0.42 0.57 16 35 H 0.10 1.33 5.98 -51.93 -0.31 1.02 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.95 6.36 -51.93 -0.33 0.62 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 41 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 43 H 0.08 0.84 8.04 -51.93 -0.42 0.42 16 44 H 0.35 4.36 8.98 -39.29 -0.35 4.01 16 45 H 0.34 3.07 9.08 -39.29 -0.36 2.71 16 46 H 0.08 1.96 7.22 -51.93 -0.37 1.58 16 47 H 0.03 0.62 6.30 -51.93 -0.33 0.30 16 48 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 49 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 LS Contribution 362.16 15.07 5.46 5.46 Total: -1.00 -29.50 362.16 -12.06 -41.55 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -7.90 Total: 7.69 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -4.30 Total: -19.62 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.29 Total: -51.63 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.50 -12.06 -41.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329923.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.404 kcal (2) G-P(sol) polarization free energy of solvation -29.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds