Wall clock time and date at job start Tue Mar 31 2020 12:38:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86796 * 120.00027 * 2 1
4 4 H 1.48506 * 109.47050 * 179.97438 * 3 2 1
5 5 H 1.48489 * 109.47354 * 299.99910 * 3 2 1
6 6 H 1.48507 * 109.47118 * 60.00174 * 3 2 1
7 7 C 1.37878 * 119.99516 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99522 * 180.02562 * 7 2 1
9 9 C 1.50690 * 120.00378 * 0.02562 * 7 2 1
10 10 C 1.53004 * 109.47193 * 179.97438 * 9 7 2
11 11 C 1.52998 * 109.46953 * 300.00111 * 10 9 7
12 12 C 1.52999 * 109.47254 * 299.99464 * 11 10 9
13 13 N 1.46896 * 109.47185 * 179.97438 * 12 11 10
14 14 C 1.46407 * 110.99923 * 175.00201 * 13 12 11
15 15 C 1.53389 * 108.72210 * 288.16779 * 14 13 12
16 16 C 1.53090 * 107.87501 * 291.83700 * 15 14 13
17 17 C 1.50677 * 109.58424 * 46.86913 * 16 15 14
18 18 C 1.38691 * 118.35819 * 164.91176 * 17 16 15
19 19 C 1.38694 * 118.81136 * 179.67850 * 18 17 16
20 20 C 1.38072 * 118.97766 * 0.17431 * 19 18 17
21 21 C 1.50702 * 119.58762 * 179.82405 * 20 19 18
22 22 N 1.46892 * 109.47380 * 94.99984 * 21 20 19
23 23 N 1.31608 * 120.82046 * 359.54735 * 20 19 18
24 24 C 1.33268 * 122.22718 * 0.66095 * 23 20 19
25 25 C 1.53004 * 109.46703 * 60.00383 * 12 11 10
26 26 C 1.52998 * 109.46953 * 299.99802 * 25 12 11
27 27 H 0.97002 * 120.00424 * 359.97438 * 1 2 3
28 28 H 1.09003 * 109.47416 * 299.99624 * 9 7 2
29 29 H 1.09003 * 109.47443 * 180.02562 * 10 9 7
30 30 H 1.08999 * 109.47419 * 60.00204 * 10 9 7
31 31 H 1.09006 * 109.46659 * 180.02562 * 11 10 9
32 32 H 1.08994 * 109.47597 * 60.00072 * 11 10 9
33 33 H 1.09002 * 109.47603 * 300.00587 * 12 11 10
34 34 H 1.09000 * 109.59622 * 168.39593 * 14 13 12
35 35 H 1.09002 * 109.71992 * 48.01324 * 14 13 12
36 36 H 1.08995 * 109.77900 * 172.23794 * 15 14 13
37 37 H 1.09002 * 109.82261 * 51.45776 * 15 14 13
38 38 H 1.08991 * 109.45337 * 286.83660 * 16 15 14
39 39 H 1.09003 * 109.44793 * 166.90419 * 16 15 14
40 40 H 1.07997 * 120.59083 * 359.70773 * 18 17 16
41 41 H 1.08002 * 120.50606 * 179.89187 * 19 18 17
42 42 H 1.09008 * 109.47008 * 214.99488 * 21 20 19
43 43 H 1.08991 * 109.47395 * 334.99283 * 21 20 19
44 44 H 1.00894 * 111.00445 * 56.04590 * 22 21 20
45 45 H 1.00906 * 111.00034 * 179.97438 * 22 21 20
46 46 H 1.09003 * 109.47443 * 59.99865 * 25 12 11
47 47 H 1.09003 * 109.47142 * 180.02562 * 25 12 11
48 48 H 1.09002 * 109.47295 * 299.99760 * 26 25 12
49 49 H 1.09006 * 109.47173 * 179.97438 * 26 25 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.7091 1.3463 0.0006
5 1 1.8904 2.3964 -1.2124
6 1 1.8904 2.3964 1.2126
7 6 2.0044 -1.1941 0.0005
8 1 3.0844 -1.1941 0.0010
9 6 1.2509 -2.4991 0.0005
10 6 2.2452 -3.6621 0.0005
11 6 3.1248 -3.5810 -1.2487
12 6 2.2452 -3.6621 -2.4979
13 7 3.0897 -3.5837 -3.6973
14 6 2.2952 -3.7765 -4.9119
15 6 1.8793 -5.2504 -4.9993
16 6 3.1401 -6.0800 -5.2554
17 6 4.2318 -5.6440 -4.3127
18 6 5.3374 -6.4672 -4.1593
19 6 6.3509 -6.0717 -3.2991
20 6 6.2246 -4.8752 -2.6219
21 6 7.3158 -4.4340 -1.6807
22 7 8.2389 -3.5364 -2.3876
23 7 5.1656 -4.1125 -2.7921
24 6 4.1667 -4.4547 -3.6052
25 6 1.2510 -2.4992 -2.4979
26 6 0.3714 -2.5802 -1.2487
27 1 -0.4851 0.8400 0.0004
28 1 0.6239 -2.5567 0.8903
29 1 1.7002 -4.6061 0.0001
30 1 2.8718 -3.6044 0.8905
31 1 3.8328 -4.4099 -1.2489
32 1 3.6698 -2.6371 -1.2487
33 1 1.7001 -4.6061 -2.4980
34 1 2.8922 -3.5127 -5.7849
35 1 1.4059 -3.1474 -4.8735
36 1 1.1749 -5.3868 -5.8198
37 1 1.4178 -5.5604 -4.0618
38 1 3.4688 -5.9329 -6.2841
39 1 2.9197 -7.1350 -5.0925
40 1 5.4080 -7.3991 -4.7004
41 1 7.2233 -6.6925 -3.1577
42 1 6.8746 -3.9080 -0.8340
43 1 7.8611 -5.3069 -1.3220
44 1 7.7461 -2.7510 -2.7854
45 1 8.9801 -3.2262 -1.7772
46 1 1.7960 -1.5552 -2.4979
47 1 0.6240 -2.5572 -3.3877
48 1 -0.1737 -3.5242 -1.2487
49 1 -0.3367 -1.7514 -1.2485
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001173329923.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:38:35
Heat of formation + Delta-G solvation = 20.126920 kcal
Electronic energy + Delta-G solvation = -28109.280951 eV
Core-core repulsion = 24648.671323 eV
Total energy + Delta-G solvation = -3460.609627 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.201 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-42.22356 -39.78537 -38.17962 -35.65621 -35.05973 -34.00796 -32.21793 -31.60450
-30.86962 -30.03876 -27.17833 -26.75729 -25.18657 -24.23599 -23.25728 -22.81402
-22.31796 -20.90830 -20.07324 -18.02655 -17.82940 -17.43898 -17.02565 -16.55703
-16.50785 -16.29552 -15.74457 -15.57206 -15.01997 -14.84860 -14.74410 -14.70098
-14.59780 -14.21536 -14.00763 -13.50045 -13.42702 -13.11753 -13.05430 -12.93518
-12.85680 -12.66465 -12.44576 -12.43770 -12.22773 -11.94562 -11.83194 -11.64526
-11.48836 -11.04808 -10.75019 -10.72217 -10.45115 -10.39227 -10.31108 -9.80973
-9.67954 -8.84871 -8.03128 -6.11230 0.19719 0.44450 1.36790 1.40160
1.50278 2.45548 2.50766 2.80437 3.25214 3.54275 3.77399 3.80227
3.85823 3.90229 3.96130 4.03222 4.11630 4.20259 4.34061 4.39534
4.43826 4.56990 4.59540 4.64084 4.69246 4.76431 4.76768 4.82365
4.86383 4.90592 4.96779 4.98431 4.99352 5.06649 5.14972 5.21619
5.29230 5.36380 5.42648 5.57915 5.61979 5.65373 5.72164 5.73930
5.96249 6.04188 6.12098 6.20527 6.34288 6.47575 6.50085 6.96121
7.32291 7.53662 9.02043
Molecular weight = 315.20amu
Principal moments of inertia in cm(-1)
A = 0.013126 B = 0.005063 C = 0.004136
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2132.578515 B = 5529.336053 C = 6768.058932
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.917 5.917
2 C 0.018 3.982
3 Si 0.937 3.063
4 H -0.275 1.275
5 H -0.282 1.282
6 H -0.281 1.281
7 C -0.498 4.498
8 H 0.043 0.957
9 C 0.040 3.960
10 C -0.102 4.102
11 C -0.073 4.073
12 C 0.121 3.879
13 N -0.506 5.506
14 C 0.053 3.947
15 C -0.154 4.154
16 C -0.067 4.067
17 C -0.178 4.178
18 C -0.063 4.063
19 C -0.174 4.174
20 C 0.123 3.877
21 C 0.115 3.885
22 N -0.842 5.842
23 N -0.506 5.506
24 C 0.303 3.697
25 C -0.079 4.079
26 C -0.100 4.100
27 H 0.257 0.743
28 H -0.008 1.008
29 H 0.046 0.954
30 H 0.041 0.959
31 H 0.047 0.953
32 H 0.050 0.950
33 H 0.042 0.958
34 H 0.084 0.916
35 H 0.088 0.912
36 H 0.104 0.896
37 H 0.056 0.944
38 H 0.094 0.906
39 H 0.096 0.904
40 H 0.166 0.834
41 H 0.157 0.843
42 H 0.029 0.971
43 H 0.109 0.891
44 H 0.339 0.661
45 H 0.355 0.645
46 H 0.044 0.956
47 H 0.055 0.945
48 H 0.029 0.971
49 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.804 -15.374 -11.466 21.540
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.557 5.557
2 C -0.180 4.180
3 Si 0.765 3.235
4 H -0.200 1.200
5 H -0.208 1.208
6 H -0.207 1.207
7 C -0.537 4.537
8 H 0.061 0.939
9 C 0.022 3.978
10 C -0.140 4.140
11 C -0.110 4.110
12 C 0.015 3.985
13 N -0.223 5.223
14 C -0.074 4.074
15 C -0.193 4.193
16 C -0.104 4.104
17 C -0.184 4.184
18 C -0.089 4.089
19 C -0.195 4.195
20 C -0.018 4.018
21 C -0.016 4.016
22 N -0.373 5.373
23 N -0.218 5.218
24 C 0.075 3.925
25 C -0.117 4.117
26 C -0.138 4.138
27 H 0.067 0.933
28 H 0.010 0.990
29 H 0.064 0.936
30 H 0.060 0.940
31 H 0.065 0.935
32 H 0.068 0.932
33 H 0.060 0.940
34 H 0.102 0.898
35 H 0.107 0.893
36 H 0.122 0.878
37 H 0.075 0.925
38 H 0.112 0.888
39 H 0.115 0.885
40 H 0.183 0.817
41 H 0.175 0.825
42 H 0.047 0.953
43 H 0.127 0.873
44 H 0.151 0.849
45 H 0.169 0.831
46 H 0.063 0.937
47 H 0.073 0.927
48 H 0.047 0.953
49 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 9.898 -14.581 -11.495 21.041
hybrid contribution -0.292 0.831 0.729 1.143
sum 9.606 -13.750 -10.766 19.931
Atomic orbital electron populations
1.69988 1.06751 1.26535 1.52472 1.25516 0.95458 1.01447 0.95562
0.85816 0.79089 0.81168 0.77470 1.19997 1.20822 1.20738 1.21316
0.92279 0.91571 1.48488 0.93879 1.18680 0.92987 0.92751 0.93411
1.21509 0.97767 0.97716 0.96980 1.21327 0.96081 1.00786 0.92845
1.21411 0.92176 0.97160 0.87733 1.57731 1.09591 1.50374 1.04602
1.22371 0.97674 0.97001 0.90317 1.22183 0.98374 0.95425 1.03285
1.20512 0.91330 1.00650 0.97908 1.21023 0.99816 0.93946 1.03632
1.21741 0.91396 0.99620 0.96174 1.22077 1.01073 0.98036 0.98303
1.21198 0.92297 0.91895 0.96451 1.20628 0.90497 0.98174 0.92281
1.58788 1.15059 1.23762 1.39691 1.67334 1.01110 1.34337 1.19066
1.19388 0.91458 0.88536 0.93167 1.21291 0.96025 0.97380 0.97018
1.21352 0.98250 0.98897 0.95319 0.93318 0.99008 0.93577 0.94046
0.93466 0.93168 0.93983 0.89773 0.89346 0.87784 0.92533 0.88788
0.88547 0.81683 0.82493 0.95320 0.87304 0.84891 0.83073 0.93704
0.92655 0.95258 0.91787
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -53.49 11.32 21.45 0.24 -53.24 16
2 C 0.02 1.01 5.30 84.66 0.45 1.46 16
3 Si 0.94 45.49 29.54 68.60 2.03 47.52 16
4 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16
5 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16
6 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16
7 C -0.50 -27.93 6.61 25.60 0.17 -27.76 16
8 H 0.04 2.48 6.71 -2.91 -0.02 2.46 16
9 C 0.04 2.06 2.59 -11.54 -0.03 2.03 16
10 C -0.10 -4.48 5.41 30.59 0.17 -4.31 16
11 C -0.07 -3.05 3.83 30.59 0.12 -2.93 16
12 C 0.12 4.58 1.85 44.92 0.08 4.66 16
13 N -0.51 -17.36 4.51 -678.46 -3.06 -20.42 16
14 C 0.05 1.41 5.67 86.53 0.49 1.90 16
15 C -0.15 -3.14 6.04 30.75 0.19 -2.96 16
16 C -0.07 -1.19 5.83 29.87 0.17 -1.02 16
17 C -0.18 -4.41 5.74 -19.69 -0.11 -4.52 16
18 C -0.06 -1.29 9.77 22.49 0.22 -1.07 16
19 C -0.17 -3.81 9.73 22.34 0.22 -3.60 16
20 C 0.12 3.42 6.29 42.55 0.27 3.69 16
21 C 0.12 2.73 7.09 85.56 0.61 3.34 16
22 N -0.84 -18.56 9.61 -190.02 -1.83 -20.39 16
23 N -0.51 -17.36 7.35 -181.55 -1.33 -18.69 16
24 C 0.30 9.81 5.37 132.72 0.71 10.52 16
25 C -0.08 -3.38 4.91 30.59 0.15 -3.23 16
26 C -0.10 -4.75 5.24 30.59 0.16 -4.59 16
27 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16
28 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16
29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16
30 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16
31 H 0.05 1.91 5.89 -2.38 -0.01 1.90 16
32 H 0.05 2.45 6.59 -2.39 -0.02 2.44 16
33 H 0.04 1.54 6.34 -2.39 -0.02 1.52 16
34 H 0.08 2.05 8.11 -2.39 -0.02 2.03 16
35 H 0.09 2.38 5.98 -2.39 -0.01 2.37 16
36 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16
37 H 0.06 1.34 6.36 -2.39 -0.02 1.33 16
38 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16
39 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16
40 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16
41 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16
42 H 0.03 0.78 8.14 -2.38 -0.02 0.77 16
43 H 0.11 1.96 8.04 -2.39 -0.02 1.94 16
44 H 0.34 8.60 8.98 -89.70 -0.81 7.80 16
45 H 0.36 6.08 9.08 -89.69 -0.81 5.27 16
46 H 0.04 2.23 7.22 -2.39 -0.02 2.22 16
47 H 0.05 2.08 6.30 -2.39 -0.02 2.06 16
48 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16
49 H 0.06 3.45 6.07 -2.38 -0.01 3.44 16
Total: -1.00 -66.76 362.16 -0.58 -67.34
By element:
Atomic # 1 Polarization: 26.92 SS G_CDS: -0.65 Total: 26.26 kcal
Atomic # 6 Polarization: -32.41 SS G_CDS: 4.03 Total: -28.38 kcal
Atomic # 7 Polarization: -106.76 SS G_CDS: -5.98 Total: -112.74 kcal
Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal
Total: -66.76 -0.58 -67.34 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001173329923.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.470 kcal
(2) G-P(sol) polarization free energy of solvation -66.764 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.706 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.579 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.343 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.127 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds