Wall clock time and date at job start Tue Mar 31 2020 12:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00027 * 2 1 4 4 H 1.48506 * 109.47050 * 179.97438 * 3 2 1 5 5 H 1.48489 * 109.47354 * 299.99910 * 3 2 1 6 6 H 1.48507 * 109.47118 * 60.00174 * 3 2 1 7 7 C 1.37878 * 119.99516 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99522 * 180.02562 * 7 2 1 9 9 C 1.50690 * 120.00378 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47193 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46953 * 300.00111 * 10 9 7 12 12 C 1.52999 * 109.47254 * 299.99464 * 11 10 9 13 13 N 1.46896 * 109.47185 * 179.97438 * 12 11 10 14 14 C 1.46407 * 110.99923 * 175.00201 * 13 12 11 15 15 C 1.53389 * 108.72210 * 288.16779 * 14 13 12 16 16 C 1.53090 * 107.87501 * 291.83700 * 15 14 13 17 17 C 1.50677 * 109.58424 * 46.86913 * 16 15 14 18 18 C 1.38691 * 118.35819 * 164.91176 * 17 16 15 19 19 C 1.38694 * 118.81136 * 179.67850 * 18 17 16 20 20 C 1.38072 * 118.97766 * 0.17431 * 19 18 17 21 21 C 1.50702 * 119.58762 * 179.82405 * 20 19 18 22 22 N 1.46892 * 109.47380 * 94.99984 * 21 20 19 23 23 N 1.31608 * 120.82046 * 359.54735 * 20 19 18 24 24 C 1.33268 * 122.22718 * 0.66095 * 23 20 19 25 25 C 1.53004 * 109.46703 * 60.00383 * 12 11 10 26 26 C 1.52998 * 109.46953 * 299.99802 * 25 12 11 27 27 H 0.97002 * 120.00424 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47416 * 299.99624 * 9 7 2 29 29 H 1.09003 * 109.47443 * 180.02562 * 10 9 7 30 30 H 1.08999 * 109.47419 * 60.00204 * 10 9 7 31 31 H 1.09006 * 109.46659 * 180.02562 * 11 10 9 32 32 H 1.08994 * 109.47597 * 60.00072 * 11 10 9 33 33 H 1.09002 * 109.47603 * 300.00587 * 12 11 10 34 34 H 1.09000 * 109.59622 * 168.39593 * 14 13 12 35 35 H 1.09002 * 109.71992 * 48.01324 * 14 13 12 36 36 H 1.08995 * 109.77900 * 172.23794 * 15 14 13 37 37 H 1.09002 * 109.82261 * 51.45776 * 15 14 13 38 38 H 1.08991 * 109.45337 * 286.83660 * 16 15 14 39 39 H 1.09003 * 109.44793 * 166.90419 * 16 15 14 40 40 H 1.07997 * 120.59083 * 359.70773 * 18 17 16 41 41 H 1.08002 * 120.50606 * 179.89187 * 19 18 17 42 42 H 1.09008 * 109.47008 * 214.99488 * 21 20 19 43 43 H 1.08991 * 109.47395 * 334.99283 * 21 20 19 44 44 H 1.00894 * 111.00445 * 56.04590 * 22 21 20 45 45 H 1.00906 * 111.00034 * 179.97438 * 22 21 20 46 46 H 1.09003 * 109.47443 * 59.99865 * 25 12 11 47 47 H 1.09003 * 109.47142 * 180.02562 * 25 12 11 48 48 H 1.09002 * 109.47295 * 299.99760 * 26 25 12 49 49 H 1.09006 * 109.47173 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 3.1248 -3.5810 -1.2487 12 6 2.2452 -3.6621 -2.4979 13 7 3.0897 -3.5837 -3.6973 14 6 2.2952 -3.7765 -4.9119 15 6 1.8793 -5.2504 -4.9993 16 6 3.1401 -6.0800 -5.2554 17 6 4.2318 -5.6440 -4.3127 18 6 5.3374 -6.4672 -4.1593 19 6 6.3509 -6.0717 -3.2991 20 6 6.2246 -4.8752 -2.6219 21 6 7.3158 -4.4340 -1.6807 22 7 8.2389 -3.5364 -2.3876 23 7 5.1656 -4.1125 -2.7921 24 6 4.1667 -4.4547 -3.6052 25 6 1.2510 -2.4992 -2.4979 26 6 0.3714 -2.5802 -1.2487 27 1 -0.4851 0.8400 0.0004 28 1 0.6239 -2.5567 0.8903 29 1 1.7002 -4.6061 0.0001 30 1 2.8718 -3.6044 0.8905 31 1 3.8328 -4.4099 -1.2489 32 1 3.6698 -2.6371 -1.2487 33 1 1.7001 -4.6061 -2.4980 34 1 2.8922 -3.5127 -5.7849 35 1 1.4059 -3.1474 -4.8735 36 1 1.1749 -5.3868 -5.8198 37 1 1.4178 -5.5604 -4.0618 38 1 3.4688 -5.9329 -6.2841 39 1 2.9197 -7.1350 -5.0925 40 1 5.4080 -7.3991 -4.7004 41 1 7.2233 -6.6925 -3.1577 42 1 6.8746 -3.9080 -0.8340 43 1 7.8611 -5.3069 -1.3220 44 1 7.7461 -2.7510 -2.7854 45 1 8.9801 -3.2262 -1.7772 46 1 1.7960 -1.5552 -2.4979 47 1 0.6240 -2.5572 -3.3877 48 1 -0.1737 -3.5242 -1.2487 49 1 -0.3367 -1.7514 -1.2485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329923.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:35 Heat of formation + Delta-G solvation = 20.126920 kcal Electronic energy + Delta-G solvation = -28109.280951 eV Core-core repulsion = 24648.671323 eV Total energy + Delta-G solvation = -3460.609627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.201 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.22356 -39.78537 -38.17962 -35.65621 -35.05973 -34.00796 -32.21793 -31.60450 -30.86962 -30.03876 -27.17833 -26.75729 -25.18657 -24.23599 -23.25728 -22.81402 -22.31796 -20.90830 -20.07324 -18.02655 -17.82940 -17.43898 -17.02565 -16.55703 -16.50785 -16.29552 -15.74457 -15.57206 -15.01997 -14.84860 -14.74410 -14.70098 -14.59780 -14.21536 -14.00763 -13.50045 -13.42702 -13.11753 -13.05430 -12.93518 -12.85680 -12.66465 -12.44576 -12.43770 -12.22773 -11.94562 -11.83194 -11.64526 -11.48836 -11.04808 -10.75019 -10.72217 -10.45115 -10.39227 -10.31108 -9.80973 -9.67954 -8.84871 -8.03128 -6.11230 0.19719 0.44450 1.36790 1.40160 1.50278 2.45548 2.50766 2.80437 3.25214 3.54275 3.77399 3.80227 3.85823 3.90229 3.96130 4.03222 4.11630 4.20259 4.34061 4.39534 4.43826 4.56990 4.59540 4.64084 4.69246 4.76431 4.76768 4.82365 4.86383 4.90592 4.96779 4.98431 4.99352 5.06649 5.14972 5.21619 5.29230 5.36380 5.42648 5.57915 5.61979 5.65373 5.72164 5.73930 5.96249 6.04188 6.12098 6.20527 6.34288 6.47575 6.50085 6.96121 7.32291 7.53662 9.02043 Molecular weight = 315.20amu Principal moments of inertia in cm(-1) A = 0.013126 B = 0.005063 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.578515 B = 5529.336053 C = 6768.058932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.018 3.982 3 Si 0.937 3.063 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.498 4.498 8 H 0.043 0.957 9 C 0.040 3.960 10 C -0.102 4.102 11 C -0.073 4.073 12 C 0.121 3.879 13 N -0.506 5.506 14 C 0.053 3.947 15 C -0.154 4.154 16 C -0.067 4.067 17 C -0.178 4.178 18 C -0.063 4.063 19 C -0.174 4.174 20 C 0.123 3.877 21 C 0.115 3.885 22 N -0.842 5.842 23 N -0.506 5.506 24 C 0.303 3.697 25 C -0.079 4.079 26 C -0.100 4.100 27 H 0.257 0.743 28 H -0.008 1.008 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.056 0.944 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.166 0.834 41 H 0.157 0.843 42 H 0.029 0.971 43 H 0.109 0.891 44 H 0.339 0.661 45 H 0.355 0.645 46 H 0.044 0.956 47 H 0.055 0.945 48 H 0.029 0.971 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.804 -15.374 -11.466 21.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.180 4.180 3 Si 0.765 3.235 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.022 3.978 10 C -0.140 4.140 11 C -0.110 4.110 12 C 0.015 3.985 13 N -0.223 5.223 14 C -0.074 4.074 15 C -0.193 4.193 16 C -0.104 4.104 17 C -0.184 4.184 18 C -0.089 4.089 19 C -0.195 4.195 20 C -0.018 4.018 21 C -0.016 4.016 22 N -0.373 5.373 23 N -0.218 5.218 24 C 0.075 3.925 25 C -0.117 4.117 26 C -0.138 4.138 27 H 0.067 0.933 28 H 0.010 0.990 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.183 0.817 41 H 0.175 0.825 42 H 0.047 0.953 43 H 0.127 0.873 44 H 0.151 0.849 45 H 0.169 0.831 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.047 0.953 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.898 -14.581 -11.495 21.041 hybrid contribution -0.292 0.831 0.729 1.143 sum 9.606 -13.750 -10.766 19.931 Atomic orbital electron populations 1.69988 1.06751 1.26535 1.52472 1.25516 0.95458 1.01447 0.95562 0.85816 0.79089 0.81168 0.77470 1.19997 1.20822 1.20738 1.21316 0.92279 0.91571 1.48488 0.93879 1.18680 0.92987 0.92751 0.93411 1.21509 0.97767 0.97716 0.96980 1.21327 0.96081 1.00786 0.92845 1.21411 0.92176 0.97160 0.87733 1.57731 1.09591 1.50374 1.04602 1.22371 0.97674 0.97001 0.90317 1.22183 0.98374 0.95425 1.03285 1.20512 0.91330 1.00650 0.97908 1.21023 0.99816 0.93946 1.03632 1.21741 0.91396 0.99620 0.96174 1.22077 1.01073 0.98036 0.98303 1.21198 0.92297 0.91895 0.96451 1.20628 0.90497 0.98174 0.92281 1.58788 1.15059 1.23762 1.39691 1.67334 1.01110 1.34337 1.19066 1.19388 0.91458 0.88536 0.93167 1.21291 0.96025 0.97380 0.97018 1.21352 0.98250 0.98897 0.95319 0.93318 0.99008 0.93577 0.94046 0.93466 0.93168 0.93983 0.89773 0.89346 0.87784 0.92533 0.88788 0.88547 0.81683 0.82493 0.95320 0.87304 0.84891 0.83073 0.93704 0.92655 0.95258 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.49 11.32 21.45 0.24 -53.24 16 2 C 0.02 1.01 5.30 84.66 0.45 1.46 16 3 Si 0.94 45.49 29.54 68.60 2.03 47.52 16 4 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 5 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 7 C -0.50 -27.93 6.61 25.60 0.17 -27.76 16 8 H 0.04 2.48 6.71 -2.91 -0.02 2.46 16 9 C 0.04 2.06 2.59 -11.54 -0.03 2.03 16 10 C -0.10 -4.48 5.41 30.59 0.17 -4.31 16 11 C -0.07 -3.05 3.83 30.59 0.12 -2.93 16 12 C 0.12 4.58 1.85 44.92 0.08 4.66 16 13 N -0.51 -17.36 4.51 -678.46 -3.06 -20.42 16 14 C 0.05 1.41 5.67 86.53 0.49 1.90 16 15 C -0.15 -3.14 6.04 30.75 0.19 -2.96 16 16 C -0.07 -1.19 5.83 29.87 0.17 -1.02 16 17 C -0.18 -4.41 5.74 -19.69 -0.11 -4.52 16 18 C -0.06 -1.29 9.77 22.49 0.22 -1.07 16 19 C -0.17 -3.81 9.73 22.34 0.22 -3.60 16 20 C 0.12 3.42 6.29 42.55 0.27 3.69 16 21 C 0.12 2.73 7.09 85.56 0.61 3.34 16 22 N -0.84 -18.56 9.61 -190.02 -1.83 -20.39 16 23 N -0.51 -17.36 7.35 -181.55 -1.33 -18.69 16 24 C 0.30 9.81 5.37 132.72 0.71 10.52 16 25 C -0.08 -3.38 4.91 30.59 0.15 -3.23 16 26 C -0.10 -4.75 5.24 30.59 0.16 -4.59 16 27 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 28 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.05 1.91 5.89 -2.38 -0.01 1.90 16 32 H 0.05 2.45 6.59 -2.39 -0.02 2.44 16 33 H 0.04 1.54 6.34 -2.39 -0.02 1.52 16 34 H 0.08 2.05 8.11 -2.39 -0.02 2.03 16 35 H 0.09 2.38 5.98 -2.39 -0.01 2.37 16 36 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.06 1.34 6.36 -2.39 -0.02 1.33 16 38 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 41 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 42 H 0.03 0.78 8.14 -2.38 -0.02 0.77 16 43 H 0.11 1.96 8.04 -2.39 -0.02 1.94 16 44 H 0.34 8.60 8.98 -89.70 -0.81 7.80 16 45 H 0.36 6.08 9.08 -89.69 -0.81 5.27 16 46 H 0.04 2.23 7.22 -2.39 -0.02 2.22 16 47 H 0.05 2.08 6.30 -2.39 -0.02 2.06 16 48 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.06 3.45 6.07 -2.38 -0.01 3.44 16 Total: -1.00 -66.76 362.16 -0.58 -67.34 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -0.65 Total: 26.26 kcal Atomic # 6 Polarization: -32.41 SS G_CDS: 4.03 Total: -28.38 kcal Atomic # 7 Polarization: -106.76 SS G_CDS: -5.98 Total: -112.74 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -66.76 -0.58 -67.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329923.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.470 kcal (2) G-P(sol) polarization free energy of solvation -66.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds