Wall clock time and date at job start Tue Mar 31 2020 11:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35903 * 116.99730 * 2 1 4 4 C 1.38759 * 120.14636 * 359.97438 * 3 2 1 5 5 C 1.37909 * 119.81193 * 180.02562 * 4 3 2 6 6 C 1.38778 * 120.45663 * 359.95836 * 5 4 3 7 7 C 1.37879 * 119.80926 * 359.87699 * 6 5 4 8 8 C 1.38522 * 120.14534 * 179.97438 * 3 2 1 9 9 C 1.50740 * 121.65856 * 180.46693 * 7 6 5 10 10 C 1.52907 * 109.95764 * 343.04489 * 9 7 6 11 11 N 1.47157 * 108.48262 * 50.43155 * 10 9 7 12 12 C 1.46909 * 110.99533 * 165.28486 * 11 10 9 13 13 C 1.53002 * 109.46750 * 189.03925 * 12 11 10 14 14 C 1.52997 * 109.46817 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.47127 * 60.00361 * 14 13 12 16 16 C 1.50698 * 109.47184 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99819 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00046 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00192 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47454 * 59.99696 * 20 18 16 22 22 H 1.48506 * 109.47297 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47261 * 299.99689 * 20 18 16 24 24 C 1.52999 * 109.46626 * 299.99539 * 15 14 13 25 25 C 1.52996 * 109.47268 * 69.04247 * 12 11 10 26 26 C 1.46626 * 110.25603 * 288.70549 * 11 10 9 27 27 H 1.09005 * 109.47055 * 299.99557 * 1 2 3 28 28 H 1.08997 * 109.47168 * 60.00320 * 1 2 3 29 29 H 1.08999 * 109.46869 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.09697 * 0.03699 * 4 3 2 31 31 H 1.08003 * 119.77546 * 179.97438 * 5 4 3 32 32 H 1.07996 * 119.84761 * 0.02562 * 8 3 2 33 33 H 1.08994 * 109.38788 * 103.18927 * 9 7 6 34 34 H 1.08998 * 109.38676 * 222.98802 * 9 7 6 35 35 H 1.09001 * 109.65173 * 290.72745 * 10 9 7 36 36 H 1.08995 * 109.62511 * 170.12725 * 10 9 7 37 37 H 1.08996 * 109.46883 * 309.03900 * 12 11 10 38 38 H 1.09002 * 109.47070 * 60.00054 * 13 12 11 39 39 H 1.08996 * 109.47407 * 299.99654 * 13 12 11 40 40 H 1.09001 * 109.47502 * 300.00518 * 14 13 12 41 41 H 1.09001 * 109.47289 * 180.02562 * 14 13 12 42 42 H 1.08993 * 109.46955 * 60.00011 * 15 14 13 43 43 H 0.96996 * 120.00505 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.46719 * 180.02562 * 24 15 14 45 45 H 1.08993 * 109.47839 * 299.99931 * 24 15 14 46 46 H 1.09001 * 109.46993 * 300.00132 * 25 12 11 47 47 H 1.09000 * 109.47380 * 59.99238 * 25 12 11 48 48 H 1.09004 * 109.27281 * 172.81708 * 26 11 10 49 49 H 1.09005 * 109.27085 * 292.28426 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2932 2.3766 -0.0005 5 6 1.9264 3.6017 -0.0011 6 6 3.3121 3.6773 -0.0002 7 6 4.0617 2.5201 0.0038 8 6 3.4291 1.2870 0.0005 9 6 5.5687 2.5537 0.0153 10 6 6.0630 3.9404 -0.3980 11 7 5.3578 4.9473 0.4109 12 6 6.0213 6.2548 0.3194 13 6 5.4025 7.2131 1.3390 14 6 6.0939 8.5747 1.2441 15 6 5.9117 9.1421 -0.1651 16 6 6.5932 10.4829 -0.2587 17 1 7.1049 10.8898 0.6010 18 6 6.5628 11.1906 -1.4416 19 7 5.9394 10.6954 -2.4883 20 14 7.4070 12.8529 -1.5575 21 1 8.8556 12.6935 -1.2720 22 1 7.2302 13.4037 -2.9253 23 1 6.8069 13.7830 -0.5675 24 6 6.5305 8.1838 -1.1846 25 6 5.8385 6.8219 -1.0898 26 6 3.9546 5.0399 -0.0042 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2145 2.3246 -0.0004 31 1 1.3399 4.5086 -0.0019 32 1 4.0173 0.3812 0.0005 33 1 5.9280 2.3257 1.0188 34 1 5.9525 1.8109 -0.6840 35 1 5.8510 4.1053 -1.4544 36 1 7.1360 4.0143 -0.2210 37 1 7.0846 6.1381 0.5290 38 1 5.5327 6.8091 2.3430 39 1 4.3393 7.3298 1.1294 40 1 7.1572 8.4577 1.4540 41 1 5.6535 9.2573 1.9708 42 1 4.8486 9.2591 -0.3749 43 1 5.9176 11.1934 -3.3204 44 1 6.4011 8.5882 -2.1885 45 1 7.5936 8.0668 -0.9748 46 1 6.2793 6.1392 -1.8162 47 1 4.7753 6.9385 -1.2995 48 1 3.4180 5.6926 0.6844 49 1 3.9037 5.4587 -1.0093 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173331035.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:26 Heat of formation + Delta-G solvation = -41.511376 kcal Electronic energy + Delta-G solvation = -26608.601671 eV Core-core repulsion = 23113.026455 eV Total energy + Delta-G solvation = -3495.575215 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -41.54635 -40.41529 -38.85651 -36.86904 -34.70074 -33.65728 -32.07710 -31.34253 -30.57729 -29.72609 -27.97439 -26.54694 -25.42850 -24.08854 -23.24219 -23.16636 -22.01639 -20.71707 -19.78858 -18.60065 -18.37870 -17.47144 -16.99417 -16.65625 -16.62628 -16.19674 -15.73915 -15.57887 -15.20905 -14.98687 -14.73570 -14.64786 -14.43719 -14.12914 -14.03983 -13.84980 -13.33203 -13.22276 -13.04547 -12.89607 -12.87742 -12.75280 -12.52790 -12.42015 -12.24239 -12.03194 -11.83920 -11.71513 -11.70529 -11.59528 -11.40912 -11.07088 -10.77227 -10.54266 -10.36057 -9.72044 -9.26519 -8.89726 -8.05884 -6.20060 0.37531 0.44583 1.41346 1.42184 1.49735 2.38204 2.44065 2.73693 2.94642 3.20025 3.74354 3.79247 3.92290 3.96140 4.11195 4.15008 4.24812 4.31492 4.37530 4.40429 4.44081 4.48072 4.52556 4.55692 4.63764 4.69377 4.75149 4.76447 4.82306 4.88177 4.89723 4.92408 4.99722 5.07990 5.08361 5.18356 5.23010 5.33431 5.37399 5.39964 5.42889 5.47673 5.62223 5.63847 5.69908 5.84282 6.05495 6.16936 6.20038 6.22953 6.43949 6.47357 6.93060 7.47876 8.97247 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.029166 B = 0.002600 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.800222 B =10765.755485 C =11085.997726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.113 3.887 4 C -0.210 4.210 5 C -0.084 4.084 6 C -0.125 4.125 7 C -0.038 4.038 8 C -0.165 4.165 9 C -0.069 4.069 10 C 0.047 3.953 11 N -0.525 5.525 12 C 0.098 3.902 13 C -0.095 4.095 14 C -0.100 4.100 15 C 0.046 3.954 16 C -0.534 4.534 17 H 0.051 0.949 18 C 0.011 3.989 19 N -0.918 5.918 20 Si 0.950 3.050 21 H -0.271 1.271 22 H -0.286 1.286 23 H -0.272 1.272 24 C -0.096 4.096 25 C -0.134 4.134 26 C 0.094 3.906 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.119 0.881 30 H 0.148 0.852 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.031 0.969 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.046 0.954 42 H -0.011 1.011 43 H 0.259 0.741 44 H 0.054 0.946 45 H 0.028 0.972 46 H 0.051 0.949 47 H 0.046 0.954 48 H 0.083 0.917 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.928 -21.599 4.954 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.068 3.932 4 C -0.228 4.228 5 C -0.103 4.103 6 C -0.126 4.126 7 C -0.038 4.038 8 C -0.183 4.183 9 C -0.106 4.106 10 C -0.081 4.081 11 N -0.247 5.247 12 C -0.010 4.010 13 C -0.133 4.133 14 C -0.138 4.138 15 C 0.028 3.972 16 C -0.572 4.572 17 H 0.069 0.931 18 C -0.187 4.187 19 N -0.558 5.558 20 Si 0.776 3.224 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.135 4.135 25 C -0.173 4.173 26 C -0.034 4.034 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.138 0.862 30 H 0.166 0.834 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.049 0.951 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.008 0.992 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.047 0.953 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.101 0.899 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.877 -21.917 5.283 23.881 hybrid contribution -0.037 1.757 -1.336 2.207 sum -7.913 -20.160 3.947 22.014 Atomic orbital electron populations 1.23323 0.76592 1.05515 1.02124 1.86033 1.23342 1.26697 1.88831 1.19085 0.92569 0.84633 0.96873 1.21332 1.00986 0.91667 1.08861 1.21051 0.93583 0.98176 0.97482 1.19665 0.93861 0.94462 1.04605 1.19572 0.96528 0.91264 0.96452 1.20483 0.91766 0.98244 1.07822 1.20586 0.89789 0.96682 1.03581 1.22230 0.99231 0.91678 0.94936 1.62615 1.01624 1.06762 1.53694 1.21649 0.98443 0.87405 0.93543 1.21457 0.99003 0.94057 0.98805 1.21483 0.99427 0.95354 0.97569 1.18617 0.94063 0.92842 0.91693 1.21628 1.34204 1.04403 0.96963 0.93058 1.25734 0.96125 1.01167 0.95687 1.70016 1.44176 1.39234 1.02325 0.85737 0.79279 0.80405 0.76989 1.19637 1.21128 1.19734 1.21333 0.96941 0.93323 1.01878 1.22116 0.99908 0.97418 0.97875 1.20917 0.89499 0.93774 0.99222 0.91868 0.91959 0.86239 0.83418 0.84704 0.84251 0.88945 0.88393 0.95078 0.89184 0.89895 0.90816 0.93146 0.93134 0.93513 0.99246 0.93229 0.92774 0.95336 0.93069 0.93557 0.89916 0.94200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.82 113.37 1.11 1.32 16 2 O -0.33 -6.65 10.50 -92.46 -0.97 -7.62 16 3 C 0.11 2.51 6.68 22.46 0.15 2.66 16 4 C -0.21 -4.33 9.04 22.32 0.20 -4.12 16 5 C -0.08 -1.95 9.64 22.32 0.22 -1.74 16 6 C -0.13 -3.26 5.80 -19.84 -0.11 -3.37 16 7 C -0.04 -0.90 5.77 -19.85 -0.11 -1.02 16 8 C -0.16 -3.70 9.59 22.42 0.22 -3.48 16 9 C -0.07 -1.41 5.94 29.83 0.18 -1.24 16 10 C 0.05 1.14 4.99 86.22 0.43 1.57 16 11 N -0.52 -14.80 4.64 -875.85 -4.06 -18.87 16 12 C 0.10 3.16 2.19 44.91 0.10 3.26 16 13 C -0.10 -3.24 5.12 30.59 0.16 -3.08 16 14 C -0.10 -4.09 5.14 30.60 0.16 -3.93 16 15 C 0.05 2.32 2.10 -11.54 -0.02 2.30 16 16 C -0.53 -29.70 8.56 25.60 0.22 -29.48 16 17 H 0.05 2.80 7.74 -2.91 -0.02 2.77 16 18 C 0.01 0.62 5.30 84.65 0.45 1.07 16 19 N -0.92 -53.70 11.32 21.45 0.24 -53.46 16 20 Si 0.95 44.05 29.54 68.60 2.03 46.08 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 24 C -0.10 -4.54 4.98 30.61 0.15 -4.39 16 25 C -0.13 -5.08 4.46 30.61 0.14 -4.95 16 26 C 0.09 2.66 4.48 85.59 0.38 3.05 16 27 H 0.06 0.61 7.67 -2.38 -0.02 0.59 16 28 H 0.06 0.61 7.67 -2.39 -0.02 0.59 16 29 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.15 2.24 6.32 -2.91 -0.02 2.22 16 31 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.03 0.81 7.23 -2.39 -0.02 0.80 16 36 H 0.09 1.98 7.87 -2.39 -0.02 1.97 16 37 H 0.08 2.65 7.91 -2.39 -0.02 2.63 16 38 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.05 1.75 6.63 -2.39 -0.02 1.73 16 40 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 42 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 43 H 0.26 14.49 8.31 -92.71 -0.77 13.71 16 44 H 0.05 2.95 6.07 -2.39 -0.01 2.93 16 45 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.05 1.82 7.01 -2.39 -0.02 1.80 16 47 H 0.05 1.84 6.23 -2.39 -0.01 1.83 16 48 H 0.08 2.38 6.62 -2.39 -0.02 2.37 16 49 H 0.04 1.26 5.94 -2.38 -0.01 1.24 16 Total: -1.00 -63.59 367.39 2.16 -61.43 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.92 Total: 18.01 kcal Atomic # 6 Polarization: -49.58 SS G_CDS: 4.00 Total: -45.57 kcal Atomic # 7 Polarization: -68.50 SS G_CDS: -3.82 Total: -72.33 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.97 Total: -7.62 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -63.59 2.16 -61.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331035.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.922 kcal (2) G-P(sol) polarization free energy of solvation -63.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds