Wall clock time and date at job start Tue Mar 31 2020 12:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 116.99778 * 2 1 4 4 C 1.38752 * 120.05849 * 0.02562 * 3 2 1 5 5 C 1.38115 * 119.94302 * 179.72333 * 4 3 2 6 6 C 1.38292 * 120.06088 * 0.02562 * 5 4 3 7 7 C 1.38245 * 120.10692 * 359.97438 * 6 5 4 8 8 C 1.38172 * 120.05647 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.02647 * 180.02562 * 8 7 6 10 10 N 1.46894 * 115.54924 * 94.09801 * 9 8 7 11 11 C 1.46905 * 111.00253 * 294.61452 * 10 9 8 12 12 C 1.52994 * 109.47086 * 271.47625 * 11 10 9 13 13 C 1.52995 * 109.47376 * 299.99290 * 12 11 10 14 14 C 1.52999 * 109.47435 * 300.00814 * 13 12 11 15 15 C 1.50699 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99634 * 239.99876 * 15 14 13 17 17 C 1.37875 * 120.00378 * 59.99542 * 15 14 13 18 18 N 1.31512 * 119.99874 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00191 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46717 * 60.00266 * 19 17 15 21 21 H 1.48496 * 109.47236 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47437 * 300.00395 * 19 17 15 23 23 C 1.53002 * 109.47309 * 59.99368 * 14 13 12 24 24 C 1.52996 * 109.47165 * 151.47062 * 11 10 9 25 25 C 1.52997 * 117.49634 * 308.42483 * 9 8 7 26 26 C 1.53001 * 117.49544 * 239.76724 * 9 8 7 27 27 H 1.09001 * 109.46926 * 59.99997 * 1 2 3 28 28 H 1.08999 * 109.47358 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47376 * 299.99835 * 1 2 3 30 30 H 1.07998 * 120.02437 * 359.70173 * 4 3 2 31 31 H 1.08000 * 119.97400 * 180.02562 * 5 4 3 32 32 H 1.07995 * 119.94604 * 180.02562 * 6 5 4 33 33 H 1.07998 * 119.97256 * 180.02562 * 7 6 5 34 34 H 1.00899 * 111.00179 * 58.57017 * 10 9 8 35 35 H 1.09007 * 109.46477 * 31.47526 * 11 10 9 36 36 H 1.08997 * 109.47372 * 59.99802 * 12 11 10 37 37 H 1.09004 * 109.46908 * 179.97438 * 12 11 10 38 38 H 1.09001 * 109.47714 * 180.02562 * 13 12 11 39 39 H 1.09008 * 109.46991 * 60.00660 * 13 12 11 40 40 H 1.08998 * 109.46713 * 299.99345 * 14 13 12 41 41 H 0.97000 * 120.00555 * 179.97438 * 18 17 15 42 42 H 1.08997 * 109.47178 * 180.02562 * 23 14 13 43 43 H 1.09002 * 109.46865 * 59.99986 * 23 14 13 44 44 H 1.08998 * 109.46980 * 180.02562 * 24 11 10 45 45 H 1.09000 * 109.47382 * 300.00599 * 24 11 10 46 46 H 1.09006 * 117.50251 * 0.02562 * 25 9 8 47 47 H 1.08999 * 117.50122 * 145.02689 * 25 9 8 48 48 H 1.08993 * 117.49673 * 214.98049 * 26 9 8 49 49 H 1.09008 * 117.49850 * 359.97438 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6047 0.0063 6 6 3.3019 3.6758 0.0110 7 6 4.0560 2.5171 0.0105 8 6 3.4311 1.2847 0.0047 9 6 4.2537 0.0220 0.0047 10 7 4.5149 -0.5639 1.3262 11 6 5.3530 0.3262 2.1406 12 6 6.8286 0.0192 1.8775 13 6 7.1206 -1.4362 2.2480 14 6 6.8099 -1.6576 3.7297 15 6 7.0970 -3.0913 4.0944 16 1 6.3061 -3.7202 4.4758 17 6 8.3692 -3.6002 3.9413 18 7 9.3321 -2.8345 3.4764 19 14 8.7252 -5.3771 4.3941 20 1 7.8775 -6.2769 3.5712 21 1 10.1571 -5.6759 4.1379 22 1 8.4239 -5.5914 5.8323 23 6 5.3342 -1.3506 3.9927 24 6 5.0423 0.1049 3.6222 25 6 5.3503 -0.1066 -1.0544 26 6 4.0715 -0.9397 -1.1711 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 0.2128 2.3203 -0.0039 31 1 1.3340 4.5113 0.0072 32 1 3.7922 4.6380 0.0160 33 1 5.1344 2.5751 0.0146 34 1 3.6522 -0.7832 1.8014 35 1 5.1449 1.3631 1.8766 36 1 7.0499 0.1769 0.8219 37 1 7.4504 0.6800 2.4815 38 1 8.1720 -1.6549 2.0610 39 1 6.4988 -2.0968 1.6437 40 1 7.4318 -0.9971 4.3339 41 1 10.2273 -3.1923 3.3689 42 1 5.1130 -1.5078 5.0483 43 1 4.7124 -2.0111 3.3884 44 1 5.6638 0.7657 4.2264 45 1 3.9910 0.3236 3.8096 46 1 5.4771 0.7222 -1.7510 47 1 6.2654 -0.6265 -0.7708 48 1 4.1458 -2.0073 -0.9642 49 1 3.3563 -0.6594 -1.9445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173331310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:02 Heat of formation + Delta-G solvation = -11.067009 kcal Electronic energy + Delta-G solvation = -27545.360426 eV Core-core repulsion = 24051.105377 eV Total energy + Delta-G solvation = -3494.255049 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.46490 -39.90887 -38.44027 -37.56174 -35.06817 -32.80244 -31.70441 -31.32909 -30.94250 -29.67187 -28.07457 -26.39796 -24.19219 -23.75512 -23.03327 -22.50588 -22.23106 -20.98174 -19.61743 -18.76091 -18.32648 -17.41426 -16.92673 -16.69198 -16.58974 -16.28746 -15.82397 -15.66158 -15.27510 -15.05699 -14.59614 -14.51133 -14.39444 -14.01335 -13.76979 -13.52289 -13.22002 -13.03875 -12.91563 -12.71151 -12.62216 -12.49079 -12.36194 -12.21733 -12.03888 -11.92437 -11.89627 -11.84038 -11.58500 -11.33860 -11.12922 -10.66701 -10.64002 -10.34551 -10.22394 -9.81234 -9.28333 -8.98763 -7.99930 -6.13371 0.36752 0.51668 1.41574 1.43443 1.50621 2.45558 2.47363 2.80878 2.90502 3.22278 3.26062 3.64433 3.97116 4.06353 4.08798 4.14493 4.21610 4.29667 4.30807 4.42306 4.44773 4.53206 4.57275 4.65283 4.72316 4.76125 4.79276 4.82267 4.87112 4.92970 4.96990 5.02914 5.05975 5.15611 5.18034 5.23736 5.35293 5.39261 5.43192 5.50873 5.54499 5.62640 5.64453 5.73252 5.88203 5.89341 6.20842 6.32503 6.36508 6.51777 6.54460 6.62539 6.99814 7.53193 9.02992 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.020354 B = 0.003520 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.325270 B = 7951.513163 C = 8186.667250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.325 6.325 3 C 0.127 3.873 4 C -0.215 4.215 5 C -0.081 4.081 6 C -0.164 4.164 7 C -0.079 4.079 8 C -0.122 4.122 9 C 0.085 3.915 10 N -0.636 5.636 11 C 0.107 3.893 12 C -0.098 4.098 13 C -0.080 4.080 14 C 0.050 3.950 15 C -0.531 4.531 16 H 0.046 0.954 17 C 0.012 3.988 18 N -0.916 5.916 19 Si 0.948 3.052 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.091 4.091 24 C -0.113 4.113 25 C -0.161 4.161 26 C -0.137 4.137 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.061 0.939 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.142 0.858 33 H 0.125 0.875 34 H 0.340 0.660 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.039 0.961 38 H 0.042 0.958 39 H 0.033 0.967 40 H -0.017 1.017 41 H 0.257 0.743 42 H 0.034 0.966 43 H 0.052 0.948 44 H 0.058 0.942 45 H 0.065 0.935 46 H 0.103 0.897 47 H 0.086 0.914 48 H 0.087 0.913 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.464 13.533 -10.422 25.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.239 6.239 3 C 0.081 3.919 4 C -0.234 4.234 5 C -0.100 4.100 6 C -0.182 4.182 7 C -0.098 4.098 8 C -0.124 4.124 9 C -0.007 4.007 10 N -0.266 5.266 11 C -0.002 4.002 12 C -0.137 4.137 13 C -0.118 4.118 14 C 0.031 3.969 15 C -0.569 4.569 16 H 0.064 0.936 17 C -0.186 4.186 18 N -0.556 5.556 19 Si 0.774 3.226 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.129 4.129 24 C -0.151 4.151 25 C -0.198 4.198 26 C -0.175 4.175 27 H 0.084 0.916 28 H 0.129 0.871 29 H 0.080 0.920 30 H 0.165 0.835 31 H 0.168 0.832 32 H 0.160 0.840 33 H 0.143 0.857 34 H 0.160 0.840 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.001 0.999 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.122 0.878 47 H 0.104 0.896 48 H 0.106 0.894 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.662 12.911 -10.649 24.332 hybrid contribution -0.090 -0.384 0.702 0.805 sum -17.753 12.528 -9.947 23.896 Atomic orbital electron populations 1.23284 0.77055 1.05135 1.02027 1.86156 1.22773 1.26614 1.88317 1.19037 0.91577 0.85113 0.96156 1.21499 1.00983 0.92008 1.08900 1.21285 0.94674 0.97758 0.96236 1.21324 0.94413 0.98611 1.03816 1.21038 1.00255 0.91285 0.97194 1.19115 0.90720 0.94926 1.07683 1.19764 1.00417 0.92888 0.87595 1.60413 1.20554 1.43308 1.02294 1.21295 0.93184 0.94008 0.91703 1.21542 0.94997 0.97559 0.99553 1.21108 0.99834 0.93834 0.97026 1.18572 0.91392 0.93619 0.93281 1.21604 0.94714 0.98300 1.42321 0.93611 1.25695 0.96317 1.01189 0.95375 1.70038 1.01618 1.37065 1.46885 0.85770 0.76919 0.81124 0.78765 1.19887 1.20973 1.19786 1.21356 0.97835 0.95296 0.98423 1.21708 1.00412 0.97340 0.95646 1.23117 0.93423 1.02826 1.00430 1.22868 0.99079 0.97179 0.98371 0.91578 0.87116 0.91995 0.83480 0.83222 0.84014 0.85681 0.84008 0.93192 0.92730 0.94233 0.93905 0.94790 0.99857 0.93358 0.94696 0.92927 0.92315 0.91681 0.87834 0.89600 0.89431 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.38 16 2 O -0.33 -7.31 9.44 -92.41 -0.87 -8.18 16 3 C 0.13 2.92 6.60 22.51 0.15 3.07 16 4 C -0.22 -3.88 9.04 22.36 0.20 -3.68 16 5 C -0.08 -1.33 10.04 22.25 0.22 -1.11 16 6 C -0.16 -3.01 10.04 22.28 0.22 -2.79 16 7 C -0.08 -1.81 8.11 22.26 0.18 -1.62 16 8 C -0.12 -3.07 4.72 -19.77 -0.09 -3.16 16 9 C 0.09 2.42 1.40 2.78 0.00 2.43 16 10 N -0.64 -20.98 5.00 -451.97 -2.26 -23.24 16 11 C 0.11 3.67 2.74 44.91 0.12 3.79 16 12 C -0.10 -3.96 5.49 30.59 0.17 -3.80 16 13 C -0.08 -3.99 4.82 30.59 0.15 -3.84 16 14 C 0.05 2.62 2.10 -11.54 -0.02 2.59 16 15 C -0.53 -30.88 8.56 25.60 0.22 -30.66 16 16 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 17 C 0.01 0.71 5.30 84.65 0.45 1.16 16 18 N -0.92 -55.26 11.32 21.45 0.24 -55.01 16 19 Si 0.95 45.63 29.54 68.60 2.03 47.65 16 20 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 22 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 23 C -0.09 -3.96 4.97 30.60 0.15 -3.81 16 24 C -0.11 -4.01 5.28 30.59 0.16 -3.85 16 25 C -0.16 -4.50 8.99 30.62 0.28 -4.23 16 26 C -0.14 -3.77 9.55 30.62 0.29 -3.48 16 27 H 0.07 0.69 7.66 -2.39 -0.02 0.68 16 28 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 30 H 0.15 1.89 6.30 -2.91 -0.02 1.87 16 31 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 32 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 33 H 0.13 2.85 7.86 -2.91 -0.02 2.83 16 34 H 0.34 11.20 8.08 -89.69 -0.72 10.48 16 35 H 0.05 1.58 5.72 -2.38 -0.01 1.57 16 36 H 0.05 2.06 5.90 -2.39 -0.01 2.05 16 37 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.04 2.44 6.07 -2.39 -0.01 2.43 16 39 H 0.03 1.74 7.60 -2.38 -0.02 1.73 16 40 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 41 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 42 H 0.03 1.49 8.14 -2.39 -0.02 1.48 16 43 H 0.05 2.29 7.38 -2.39 -0.02 2.27 16 44 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 46 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 47 H 0.09 2.80 6.87 -2.39 -0.02 2.78 16 48 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 49 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 Total: -1.00 -66.23 376.73 3.31 -62.92 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 0.21 Total: 27.46 kcal Atomic # 6 Polarization: -55.56 SS G_CDS: 3.97 Total: -51.60 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -2.02 Total: -78.25 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.87 Total: -8.18 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -66.23 3.31 -62.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.848 kcal (2) G-P(sol) polarization free energy of solvation -66.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds