Wall clock time and date at job start Tue Mar 31 2020 11:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35905 * 116.99970 * 2 1 4 4 C 1.38755 * 120.12255 * 359.96907 * 3 2 1 5 5 C 1.37933 * 119.76248 * 180.10565 * 4 3 2 6 6 C 1.38719 * 120.43270 * 0.03878 * 5 4 3 7 7 C 1.37884 * 119.93717 * 359.81792 * 6 5 4 8 8 C 1.38504 * 120.12353 * 180.02562 * 3 2 1 9 9 C 1.50629 * 121.84568 * 180.26324 * 7 6 5 10 10 N 1.46626 * 110.50172 * 342.41435 * 9 7 6 11 11 C 1.46909 * 110.99993 * 175.95356 * 10 9 7 12 12 C 1.53002 * 109.46750 * 66.04644 * 11 10 9 13 13 C 1.52997 * 109.46817 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.47127 * 60.00361 * 13 12 11 15 15 C 1.50698 * 109.47184 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99819 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00046 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00192 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47454 * 59.99696 * 19 17 15 21 21 H 1.48506 * 109.47297 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47261 * 299.99689 * 19 17 15 23 23 C 1.52999 * 109.46626 * 299.99539 * 14 13 12 24 24 C 1.52996 * 109.47268 * 306.04966 * 11 10 9 25 25 C 1.47158 * 110.25072 * 52.53700 * 10 9 7 26 26 C 1.50737 * 118.43026 * 179.55370 * 6 5 4 27 27 H 1.08994 * 109.46965 * 60.00186 * 1 2 3 28 28 H 1.08997 * 109.46671 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46885 * 300.00507 * 1 2 3 30 30 H 1.07995 * 120.12213 * 0.09073 * 4 3 2 31 31 H 1.08000 * 119.78193 * 180.02562 * 5 4 3 32 32 H 1.08003 * 119.82843 * 359.94259 * 8 3 2 33 33 H 1.09001 * 109.27331 * 222.14763 * 9 7 6 34 34 H 1.09004 * 109.24255 * 102.66433 * 9 7 6 35 35 H 1.08996 * 109.46883 * 186.04619 * 11 10 9 36 36 H 1.09002 * 109.47070 * 60.00054 * 12 11 10 37 37 H 1.08996 * 109.47407 * 299.99654 * 12 11 10 38 38 H 1.09001 * 109.47502 * 300.00518 * 13 12 11 39 39 H 1.09001 * 109.47289 * 180.02562 * 13 12 11 40 40 H 1.08993 * 109.46955 * 60.00011 * 14 13 12 41 41 H 0.96996 * 120.00505 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.46719 * 180.02562 * 23 14 13 43 43 H 1.08993 * 109.47839 * 299.99931 * 23 14 13 44 44 H 1.09001 * 109.46993 * 300.00132 * 24 11 10 45 45 H 1.09000 * 109.47380 * 59.99238 * 24 11 10 46 46 H 1.09007 * 109.63102 * 48.42958 * 25 10 9 47 47 H 1.08995 * 109.63287 * 169.01808 * 25 10 9 48 48 H 1.09003 * 109.38759 * 283.44120 * 26 6 5 49 49 H 1.09001 * 109.39116 * 43.24043 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2928 2.3762 -0.0006 5 6 1.9267 3.6013 -0.0029 6 6 3.3119 3.6756 -0.0052 7 6 4.0631 2.5194 -0.0016 8 6 3.4290 1.2864 -0.0005 9 6 5.5691 2.5500 0.0019 10 7 6.0569 3.8687 -0.4140 11 6 7.5213 3.9412 -0.3227 12 6 8.1438 2.9847 -1.3418 13 6 9.6689 3.0607 -1.2471 14 6 10.1128 2.6636 0.1623 15 6 11.6150 2.7390 0.2557 16 1 12.1952 3.0397 -0.6042 17 6 12.2489 2.4232 1.4387 18 7 11.5425 2.0566 2.4857 19 14 14.1109 2.5160 1.5544 20 1 14.5562 3.9034 1.2681 21 1 14.5418 2.1307 2.9223 22 1 14.7152 1.5881 0.5649 23 6 9.4904 3.6201 1.1813 24 6 7.9647 3.5438 1.0867 25 6 5.4252 4.9237 0.3944 26 6 3.9575 5.0377 -0.0179 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2141 2.3243 0.0003 31 1 1.3408 4.5085 -0.0029 32 1 4.0165 0.3801 0.0000 33 1 5.9459 1.7935 -0.6865 34 1 5.9305 2.3333 1.0072 35 1 7.8485 4.9594 -0.5329 36 1 7.8279 3.2679 -2.3459 37 1 7.8166 1.9665 -1.1316 38 1 9.9958 4.0790 -1.4576 39 1 10.1125 2.3797 -1.9735 40 1 9.7860 1.6453 0.3727 41 1 11.9884 1.8341 3.3179 42 1 9.8069 3.3375 2.1854 43 1 9.8172 4.6383 0.9709 44 1 7.5212 4.2251 1.8128 45 1 7.6374 2.5255 1.2970 46 1 5.4896 4.6634 1.4510 47 1 5.9304 5.8730 0.2169 48 1 3.8952 5.4583 -1.0216 49 1 3.4365 5.6916 0.6814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331921.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:53 Heat of formation + Delta-G solvation = -26.161079 kcal Electronic energy + Delta-G solvation = -26661.522211 eV Core-core repulsion = 23166.612634 eV Total energy + Delta-G solvation = -3494.909577 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.58899 -39.30308 -37.69812 -35.53040 -33.02091 -32.38022 -31.11896 -29.70948 -29.38210 -28.31441 -27.08113 -25.28922 -23.97286 -22.85142 -22.31700 -21.60015 -20.58177 -19.32873 -18.64049 -17.61123 -16.50790 -16.28391 -15.93479 -15.69189 -15.38749 -14.93657 -14.62547 -14.35857 -13.92829 -13.76130 -13.51640 -13.32366 -13.10184 -12.86709 -12.64994 -12.50814 -12.31972 -12.01130 -11.96820 -11.76266 -11.37763 -11.28197 -11.01816 -10.88856 -10.77387 -10.70418 -10.64435 -10.33145 -10.22355 -10.05015 -9.92377 -9.30081 -9.02720 -8.79631 -8.64952 -8.28826 -8.08251 -7.86111 -5.94472 -4.00586 1.25659 1.37530 3.09929 3.33613 3.38300 3.41031 3.65135 4.12747 4.46804 4.61930 4.69485 4.79616 4.87797 4.88799 5.12929 5.13577 5.18587 5.21579 5.34414 5.40815 5.47374 5.51045 5.57274 5.67707 5.74547 5.84001 5.90054 5.93994 5.96631 6.11389 6.18140 6.23024 6.25231 6.33857 6.40035 6.43145 6.57259 6.63348 6.69357 6.76376 6.83582 6.95673 7.14631 7.25274 7.27623 7.31779 7.46121 7.56185 7.78507 8.06075 8.19292 8.51587 9.03643 9.63897 11.10853 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.023108 B = 0.002759 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.417139 B =10144.698226 C =10714.822654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.121 3.879 4 C -0.212 4.212 5 C -0.083 4.083 6 C -0.104 4.104 7 C -0.028 4.028 8 C -0.150 4.150 9 C 0.083 3.917 10 N -0.528 5.528 11 C 0.088 3.912 12 C -0.105 4.105 13 C -0.108 4.108 14 C 0.049 3.951 15 C -0.512 4.512 16 H 0.053 0.947 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.888 3.112 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.104 4.104 24 C -0.148 4.148 25 C 0.049 3.951 26 C -0.070 4.070 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.047 0.953 39 H 0.048 0.952 40 H 0.023 0.977 41 H 0.259 0.741 42 H 0.090 0.910 43 H 0.032 0.968 44 H 0.040 0.960 45 H 0.056 0.944 46 H 0.040 0.960 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.223 2.242 -4.036 22.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.076 3.924 4 C -0.230 4.230 5 C -0.101 4.101 6 C -0.105 4.105 7 C -0.029 4.029 8 C -0.169 4.169 9 C -0.045 4.045 10 N -0.250 5.250 11 C -0.020 4.020 12 C -0.143 4.143 13 C -0.146 4.146 14 C 0.031 3.969 15 C -0.550 4.550 16 H 0.071 0.929 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.716 3.284 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.143 4.143 24 C -0.187 4.187 25 C -0.079 4.079 26 C -0.107 4.107 27 H 0.072 0.928 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.148 0.852 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.108 0.892 43 H 0.051 0.949 44 H 0.059 0.941 45 H 0.075 0.925 46 H 0.058 0.942 47 H 0.096 0.904 48 H 0.098 0.902 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -22.252 2.074 -4.354 22.769 hybrid contribution 0.870 -0.005 1.040 1.356 sum -21.382 2.070 -3.314 21.736 Atomic orbital electron populations 1.23014 0.78682 1.03728 1.01181 1.86071 1.21124 1.27087 1.88985 1.18848 0.92194 0.84023 0.97320 1.21096 0.99652 0.92411 1.09862 1.20847 0.93856 0.96940 0.98455 1.19521 0.92873 0.95111 1.02976 1.19501 0.95481 0.91594 0.96285 1.20290 0.91359 0.98221 1.07019 1.21089 0.89480 0.93094 1.00800 1.62611 1.06951 1.02189 1.53292 1.21837 0.84248 1.00227 0.95677 1.21571 0.96948 0.98321 0.97422 1.21621 0.92302 1.00295 1.00382 1.18644 0.94611 0.94871 0.88804 1.21215 0.91813 1.45105 0.96903 0.92869 1.24965 0.97873 0.95238 0.95942 1.69863 1.34921 1.46294 1.01984 0.86722 0.86229 0.78437 0.76967 1.20371 1.21399 1.20348 1.21553 0.89510 0.98766 1.04462 1.22283 1.00518 1.00256 0.95628 1.22123 0.94158 0.95918 0.95674 1.20481 0.94842 0.93208 1.02165 0.92799 0.88399 0.92820 0.85799 0.86028 0.85167 0.88951 0.92036 0.90357 0.92848 0.92761 0.93426 0.93354 0.95865 0.93093 0.89172 0.94889 0.94078 0.92517 0.94198 0.90381 0.90205 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.82 101.05 0.99 1.20 16 2 O -0.32 -3.69 10.50 -19.44 -0.20 -3.89 16 3 C 0.12 1.50 6.68 -39.29 -0.26 1.24 16 4 C -0.21 -2.27 9.04 -39.50 -0.36 -2.63 16 5 C -0.08 -0.90 9.65 -39.52 -0.38 -1.28 16 6 C -0.10 -1.30 5.77 -104.56 -0.60 -1.91 16 7 C -0.03 -0.39 5.79 -104.64 -0.61 -0.99 16 8 C -0.15 -2.00 9.59 -39.33 -0.38 -2.37 16 9 C 0.08 1.21 4.48 -5.16 -0.02 1.19 16 10 N -0.53 -7.79 4.64 -228.21 -1.06 -8.85 16 11 C 0.09 1.46 2.19 -67.71 -0.15 1.31 16 12 C -0.10 -1.83 5.12 -26.73 -0.14 -1.97 16 13 C -0.11 -2.21 5.14 -26.73 -0.14 -2.35 16 14 C 0.05 1.20 2.10 -91.77 -0.19 1.01 16 15 C -0.51 -14.00 8.56 -34.44 -0.29 -14.29 16 16 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 17 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 18 N -0.89 -25.43 11.32 55.43 0.63 -24.80 16 19 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 C -0.10 -2.40 4.98 -26.71 -0.13 -2.54 16 24 C -0.15 -2.78 4.46 -26.71 -0.12 -2.90 16 25 C 0.05 0.64 4.98 -3.74 -0.02 0.62 16 26 C -0.07 -0.77 5.94 -27.92 -0.17 -0.94 16 27 H 0.05 0.33 7.67 -51.93 -0.40 -0.07 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.33 7.67 -51.93 -0.40 -0.07 16 30 H 0.12 1.02 6.32 -52.49 -0.33 0.68 16 31 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.13 1.65 8.06 -52.48 -0.42 1.22 16 33 H 0.09 1.36 6.62 -51.93 -0.34 1.02 16 34 H 0.06 0.96 5.94 -51.93 -0.31 0.65 16 35 H 0.08 1.32 7.91 -51.93 -0.41 0.91 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.95 6.63 -51.93 -0.34 0.61 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 43 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.04 0.73 7.01 -51.93 -0.36 0.36 16 45 H 0.06 1.10 6.23 -51.93 -0.32 0.78 16 46 H 0.04 0.54 7.23 -51.92 -0.38 0.17 16 47 H 0.08 0.95 7.87 -51.93 -0.41 0.54 16 48 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 49 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 367.38 15.07 5.54 5.54 Total: -1.00 -29.25 367.38 -11.27 -40.52 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -8.09 Total: 1.21 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: -3.06 Total: -26.03 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: -0.43 Total: -33.65 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.20 Total: -3.89 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.25 -11.27 -40.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331921.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.361 kcal (2) G-P(sol) polarization free energy of solvation -29.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds