Wall clock time and date at job start Tue Mar 31 2020 11:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35905 * 116.99970 * 2 1 4 4 C 1.38755 * 120.12255 * 359.96907 * 3 2 1 5 5 C 1.37933 * 119.76248 * 180.10565 * 4 3 2 6 6 C 1.38719 * 120.43270 * 0.03878 * 5 4 3 7 7 C 1.37884 * 119.93717 * 359.81792 * 6 5 4 8 8 C 1.38504 * 120.12353 * 180.02562 * 3 2 1 9 9 C 1.50629 * 121.84568 * 180.26324 * 7 6 5 10 10 N 1.46626 * 110.50172 * 342.41435 * 9 7 6 11 11 C 1.46909 * 110.99993 * 175.95356 * 10 9 7 12 12 C 1.53002 * 109.46750 * 66.04644 * 11 10 9 13 13 C 1.52997 * 109.46817 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.47127 * 60.00361 * 13 12 11 15 15 C 1.50698 * 109.47184 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99819 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00046 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00192 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47454 * 59.99696 * 19 17 15 21 21 H 1.48506 * 109.47297 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47261 * 299.99689 * 19 17 15 23 23 C 1.52999 * 109.46626 * 299.99539 * 14 13 12 24 24 C 1.52996 * 109.47268 * 306.04966 * 11 10 9 25 25 C 1.47158 * 110.25072 * 52.53700 * 10 9 7 26 26 C 1.50737 * 118.43026 * 179.55370 * 6 5 4 27 27 H 1.08994 * 109.46965 * 60.00186 * 1 2 3 28 28 H 1.08997 * 109.46671 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46885 * 300.00507 * 1 2 3 30 30 H 1.07995 * 120.12213 * 0.09073 * 4 3 2 31 31 H 1.08000 * 119.78193 * 180.02562 * 5 4 3 32 32 H 1.08003 * 119.82843 * 359.94259 * 8 3 2 33 33 H 1.09001 * 109.27331 * 222.14763 * 9 7 6 34 34 H 1.09004 * 109.24255 * 102.66433 * 9 7 6 35 35 H 1.08996 * 109.46883 * 186.04619 * 11 10 9 36 36 H 1.09002 * 109.47070 * 60.00054 * 12 11 10 37 37 H 1.08996 * 109.47407 * 299.99654 * 12 11 10 38 38 H 1.09001 * 109.47502 * 300.00518 * 13 12 11 39 39 H 1.09001 * 109.47289 * 180.02562 * 13 12 11 40 40 H 1.08993 * 109.46955 * 60.00011 * 14 13 12 41 41 H 0.96996 * 120.00505 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.46719 * 180.02562 * 23 14 13 43 43 H 1.08993 * 109.47839 * 299.99931 * 23 14 13 44 44 H 1.09001 * 109.46993 * 300.00132 * 24 11 10 45 45 H 1.09000 * 109.47380 * 59.99238 * 24 11 10 46 46 H 1.09007 * 109.63102 * 48.42958 * 25 10 9 47 47 H 1.08995 * 109.63287 * 169.01808 * 25 10 9 48 48 H 1.09003 * 109.38759 * 283.44120 * 26 6 5 49 49 H 1.09001 * 109.39116 * 43.24043 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2928 2.3762 -0.0006 5 6 1.9267 3.6013 -0.0029 6 6 3.3119 3.6756 -0.0052 7 6 4.0631 2.5194 -0.0016 8 6 3.4290 1.2864 -0.0005 9 6 5.5691 2.5500 0.0019 10 7 6.0569 3.8687 -0.4140 11 6 7.5213 3.9412 -0.3227 12 6 8.1438 2.9847 -1.3418 13 6 9.6689 3.0607 -1.2471 14 6 10.1128 2.6636 0.1623 15 6 11.6150 2.7390 0.2557 16 1 12.1952 3.0397 -0.6042 17 6 12.2489 2.4232 1.4387 18 7 11.5425 2.0566 2.4857 19 14 14.1109 2.5160 1.5544 20 1 14.5562 3.9034 1.2681 21 1 14.5418 2.1307 2.9223 22 1 14.7152 1.5881 0.5649 23 6 9.4904 3.6201 1.1813 24 6 7.9647 3.5438 1.0867 25 6 5.4252 4.9237 0.3944 26 6 3.9575 5.0377 -0.0179 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2141 2.3243 0.0003 31 1 1.3408 4.5085 -0.0029 32 1 4.0165 0.3801 0.0000 33 1 5.9459 1.7935 -0.6865 34 1 5.9305 2.3333 1.0072 35 1 7.8485 4.9594 -0.5329 36 1 7.8279 3.2679 -2.3459 37 1 7.8166 1.9665 -1.1316 38 1 9.9958 4.0790 -1.4576 39 1 10.1125 2.3797 -1.9735 40 1 9.7860 1.6453 0.3727 41 1 11.9884 1.8341 3.3179 42 1 9.8069 3.3375 2.1854 43 1 9.8172 4.6383 0.9709 44 1 7.5212 4.2251 1.8128 45 1 7.6374 2.5255 1.2970 46 1 5.4896 4.6634 1.4510 47 1 5.9304 5.8730 0.2169 48 1 3.8952 5.4583 -1.0216 49 1 3.4365 5.6916 0.6814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173331921.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:51 Heat of formation + Delta-G solvation = -41.458414 kcal Electronic energy + Delta-G solvation = -26662.185553 eV Core-core repulsion = 23166.612634 eV Total energy + Delta-G solvation = -3495.572919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -41.55399 -40.41845 -38.87055 -36.88431 -34.63470 -33.55793 -32.40630 -31.36124 -30.31862 -29.78376 -27.82835 -26.78671 -25.44099 -24.00270 -23.23852 -23.16177 -22.02670 -20.68376 -19.91413 -18.57984 -18.37906 -17.47217 -16.71808 -16.67223 -16.58986 -16.43546 -15.94930 -15.50018 -15.24860 -14.97991 -14.70718 -14.60208 -14.40851 -14.09920 -14.01299 -13.73546 -13.44371 -13.32123 -13.04869 -12.91072 -12.87492 -12.76426 -12.56067 -12.45758 -12.16004 -11.99717 -11.81682 -11.77282 -11.64157 -11.55028 -11.45506 -11.07242 -10.78639 -10.55106 -10.36603 -9.81175 -9.14456 -8.95561 -8.06101 -6.20478 0.34892 0.47771 1.41083 1.42087 1.49652 2.36207 2.43909 2.74384 2.95912 3.19774 3.72129 3.80078 3.90676 3.98594 4.09830 4.15637 4.25955 4.33181 4.38104 4.38237 4.40960 4.47518 4.52088 4.54204 4.62482 4.69824 4.74379 4.79999 4.81713 4.83907 4.90280 4.92285 5.00240 5.06547 5.07077 5.19295 5.25284 5.34715 5.36255 5.38952 5.44672 5.46817 5.61295 5.64592 5.69095 5.86039 6.04772 6.13952 6.19620 6.22354 6.43384 6.48777 6.92658 7.47519 8.97096 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.023108 B = 0.002759 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.417139 B =10144.698226 C =10714.822654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.111 3.889 4 C -0.207 4.207 5 C -0.079 4.079 6 C -0.117 4.117 7 C -0.047 4.047 8 C -0.172 4.172 9 C 0.088 3.912 10 N -0.523 5.523 11 C 0.098 3.902 12 C -0.097 4.097 13 C -0.100 4.100 14 C 0.046 3.954 15 C -0.534 4.534 16 H 0.052 0.948 17 C 0.011 3.989 18 N -0.918 5.918 19 Si 0.951 3.049 20 H -0.270 1.270 21 H -0.286 1.286 22 H -0.272 1.272 23 C -0.096 4.096 24 C -0.135 4.135 25 C 0.045 3.955 26 C -0.063 4.063 27 H 0.066 0.934 28 H 0.116 0.884 29 H 0.065 0.935 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.121 0.879 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.047 0.953 38 H 0.051 0.949 39 H 0.046 0.954 40 H -0.012 1.012 41 H 0.259 0.741 42 H 0.054 0.946 43 H 0.029 0.971 44 H 0.052 0.948 45 H 0.044 0.956 46 H 0.030 0.970 47 H 0.090 0.910 48 H 0.088 0.912 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.409 3.884 -4.929 25.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.066 3.934 4 C -0.225 4.225 5 C -0.097 4.097 6 C -0.117 4.117 7 C -0.047 4.047 8 C -0.191 4.191 9 C -0.040 4.040 10 N -0.245 5.245 11 C -0.010 4.010 12 C -0.134 4.134 13 C -0.138 4.138 14 C 0.028 3.972 15 C -0.572 4.572 16 H 0.070 0.930 17 C -0.187 4.187 18 N -0.558 5.558 19 Si 0.777 3.223 20 H -0.195 1.195 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.134 4.134 24 C -0.174 4.174 25 C -0.083 4.083 26 C -0.100 4.100 27 H 0.085 0.915 28 H 0.134 0.866 29 H 0.084 0.916 30 H 0.171 0.829 31 H 0.171 0.829 32 H 0.139 0.861 33 H 0.101 0.899 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.006 0.994 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.048 0.952 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.048 0.952 47 H 0.108 0.892 48 H 0.106 0.894 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -24.455 3.717 -5.258 25.288 hybrid contribution 1.468 -0.586 1.337 2.070 sum -22.987 3.131 -3.921 23.528 Atomic orbital electron populations 1.23331 0.76386 1.05452 1.02323 1.86045 1.23573 1.27013 1.88904 1.18988 0.92010 0.85070 0.97292 1.21445 1.01080 0.91689 1.08298 1.21198 0.93314 0.98211 0.96966 1.19778 0.93842 0.95117 1.02989 1.19443 0.94667 0.92501 0.98105 1.20354 0.92377 0.98000 1.08370 1.20967 0.90732 0.92815 0.99467 1.62624 1.05348 1.02796 1.53733 1.21658 0.85804 1.00064 0.93503 1.21468 0.94652 0.98436 0.98880 1.21479 0.94540 1.00215 0.97557 1.18618 0.93569 0.93336 0.91715 1.21625 0.93514 1.45106 0.96964 0.93014 1.25744 1.02338 0.94988 0.95671 1.70020 1.36531 1.46915 1.02321 0.85726 0.80910 0.78723 0.76984 1.19550 1.21124 1.19761 1.21330 0.92422 0.97825 1.01870 1.22121 0.97348 0.99985 0.97919 1.22268 0.95680 0.95520 0.94850 1.20492 0.93284 0.92939 1.03268 0.91532 0.86611 0.91636 0.82927 0.82871 0.86090 0.89933 0.93849 0.89637 0.90747 0.93387 0.92980 0.93560 0.99412 0.93228 0.92775 0.95179 0.92931 0.93777 0.95190 0.89207 0.89378 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.82 113.37 1.11 1.34 16 2 O -0.34 -7.59 10.50 -92.48 -0.97 -8.56 16 3 C 0.11 2.66 6.68 22.46 0.15 2.81 16 4 C -0.21 -3.87 9.04 22.32 0.20 -3.67 16 5 C -0.08 -1.46 9.65 22.31 0.22 -1.24 16 6 C -0.12 -2.67 5.77 -19.82 -0.11 -2.78 16 7 C -0.05 -1.27 5.79 -19.87 -0.12 -1.39 16 8 C -0.17 -4.67 9.59 22.43 0.22 -4.46 16 9 C 0.09 2.62 4.48 85.59 0.38 3.00 16 10 N -0.52 -14.96 4.64 -875.91 -4.07 -19.03 16 11 C 0.10 3.21 2.19 44.91 0.10 3.31 16 12 C -0.10 -3.35 5.12 30.59 0.16 -3.19 16 13 C -0.10 -4.13 5.14 30.60 0.16 -3.97 16 14 C 0.05 2.34 2.10 -11.54 -0.02 2.31 16 15 C -0.53 -29.94 8.56 25.60 0.22 -29.72 16 16 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 17 C 0.01 0.61 5.30 84.65 0.45 1.06 16 18 N -0.92 -54.18 11.32 21.45 0.24 -53.94 16 19 Si 0.95 44.34 29.54 68.60 2.03 46.36 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 23 C -0.10 -4.57 4.98 30.61 0.15 -4.41 16 24 C -0.13 -5.18 4.46 30.61 0.14 -5.04 16 25 C 0.04 1.07 4.98 86.22 0.43 1.50 16 26 C -0.06 -1.21 5.94 29.82 0.18 -1.03 16 27 H 0.07 0.63 7.67 -2.39 -0.02 0.61 16 28 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 0.63 7.67 -2.38 -0.02 0.61 16 30 H 0.15 1.89 6.32 -2.91 -0.02 1.88 16 31 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 32 H 0.12 3.32 8.06 -2.91 -0.02 3.29 16 33 H 0.08 2.55 6.62 -2.39 -0.02 2.54 16 34 H 0.04 1.43 5.94 -2.38 -0.01 1.42 16 35 H 0.09 2.73 7.91 -2.39 -0.02 2.71 16 36 H 0.07 2.30 8.14 -2.39 -0.02 2.29 16 37 H 0.05 1.72 6.63 -2.39 -0.02 1.71 16 38 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 40 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 41 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 42 H 0.05 2.97 6.07 -2.39 -0.01 2.96 16 43 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.05 1.88 7.01 -2.39 -0.02 1.86 16 45 H 0.04 1.80 6.23 -2.39 -0.01 1.78 16 46 H 0.03 0.78 7.23 -2.38 -0.02 0.77 16 47 H 0.09 1.95 7.87 -2.39 -0.02 1.93 16 48 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -65.17 367.38 2.16 -63.01 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.92 Total: 17.72 kcal Atomic # 6 Polarization: -49.58 SS G_CDS: 4.00 Total: -45.58 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -3.82 Total: -72.96 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.97 Total: -8.56 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -65.17 2.16 -63.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331921.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.554 kcal (2) G-P(sol) polarization free energy of solvation -65.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds