Wall clock time and date at job start Tue Mar 31 2020 11:57:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42906 * 1
3 3 C 1.35895 * 117.00434 * 2 1
4 4 C 1.38750 * 120.08782 * 359.97438 * 3 2 1
5 5 C 1.38005 * 119.87902 * 180.02562 * 4 3 2
6 6 C 1.38549 * 120.28701 * 359.97377 * 5 4 3
7 7 C 1.38257 * 119.93736 * 0.02773 * 6 5 4
8 8 C 1.38408 * 119.90652 * 359.75084 * 7 6 5
9 9 C 1.51390 * 109.75192 * 179.97438 * 7 6 5
10 10 C 1.54339 * 105.17105 * 342.80157 * 9 7 6
11 11 C 1.51395 * 130.32035 * 180.02562 * 6 5 4
12 12 H 1.08995 * 110.30178 * 78.17945 * 11 6 5
13 13 N 1.46899 * 110.29999 * 316.12945 * 11 6 5
14 14 C 1.46901 * 110.99768 * 155.71608 * 13 11 6
15 15 C 1.52991 * 109.47487 * 273.53974 * 14 13 11
16 16 C 1.53006 * 109.47248 * 179.97438 * 15 14 13
17 17 C 1.52999 * 109.46809 * 60.00197 * 16 15 14
18 18 C 1.50698 * 109.46980 * 179.97438 * 17 16 15
19 19 H 1.08000 * 120.00145 * 119.99451 * 18 17 16
20 20 C 1.37882 * 120.00062 * 300.00144 * 18 17 16
21 21 N 1.31510 * 119.99836 * 179.97438 * 20 18 17
22 22 Si 1.86795 * 119.99883 * 359.97438 * 20 18 17
23 23 H 1.48504 * 109.46869 * 90.00320 * 22 20 18
24 24 H 1.48503 * 109.47237 * 209.99909 * 22 20 18
25 25 H 1.48498 * 109.47378 * 330.00168 * 22 20 18
26 26 C 1.53001 * 109.47085 * 299.99927 * 17 16 15
27 27 C 1.52995 * 109.46974 * 60.00481 * 26 17 16
28 28 H 1.08994 * 109.46888 * 300.00440 * 1 2 3
29 29 H 1.09001 * 109.47059 * 60.00290 * 1 2 3
30 30 H 1.08999 * 109.47015 * 180.02562 * 1 2 3
31 31 H 1.08005 * 120.06446 * 0.02562 * 4 3 2
32 32 H 1.08000 * 119.86141 * 180.02562 * 5 4 3
33 33 H 1.08008 * 119.91286 * 180.02562 * 8 7 6
34 34 H 1.08994 * 110.29909 * 101.72794 * 9 7 6
35 35 H 1.08999 * 110.29883 * 223.88222 * 9 7 6
36 36 H 1.09000 * 110.82624 * 268.14437 * 10 9 7
37 37 H 1.09004 * 110.98495 * 144.66885 * 10 9 7
38 38 H 1.00896 * 111.00091 * 279.67168 * 13 11 6
39 39 H 1.09002 * 109.47101 * 33.54805 * 14 13 11
40 40 H 1.09001 * 109.47669 * 299.99952 * 15 14 13
41 41 H 1.09003 * 109.47113 * 59.99840 * 15 14 13
42 42 H 1.08999 * 109.47002 * 300.00057 * 16 15 14
43 43 H 1.09004 * 109.46957 * 179.97438 * 16 15 14
44 44 H 1.08999 * 109.47453 * 60.00136 * 17 16 15
45 45 H 0.97001 * 119.99871 * 180.02562 * 21 20 18
46 46 H 1.08999 * 109.47106 * 299.99842 * 26 17 16
47 47 H 1.09004 * 109.46539 * 180.02562 * 26 17 16
48 48 H 1.09004 * 109.46693 * 180.02562 * 27 26 17
49 49 H 1.08999 * 109.47726 * 59.99741 * 27 26 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0461 1.2108 0.0000
4 6 1.2923 2.3757 -0.0005
5 6 1.9234 3.6030 -0.0011
6 6 3.3069 3.6772 -0.0005
7 6 4.0601 2.5179 0.0000
8 6 3.4300 1.2856 0.0052
9 6 5.5336 2.8651 -0.0001
10 6 5.6004 4.3426 -0.4412
11 6 4.2232 4.8824 -0.0004
12 1 4.2850 5.3104 1.0001
13 7 3.7414 5.8891 -0.9556
14 6 4.2158 7.2306 -0.5907
15 6 3.2446 7.8604 0.4097
16 6 3.7392 9.2575 0.7903
17 6 3.8166 10.1302 -0.4640
18 6 4.3030 11.5064 -0.0891
19 1 5.2142 11.8933 -0.5210
20 6 3.5850 12.2715 0.8053
21 7 4.0098 13.4722 1.1328
22 14 2.0088 11.6026 1.5518
23 1 2.3253 10.8769 2.8083
24 1 1.0855 12.7271 1.8489
25 1 1.3625 10.6719 0.5920
26 6 4.7878 9.5003 -1.4645
27 6 4.2932 8.1034 -1.8450
28 1 -0.3633 0.5139 0.8899
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 0.2136 2.3221 -0.0005
32 1 1.3364 4.5095 -0.0011
33 1 4.0183 0.3798 0.0060
34 1 5.9493 2.7500 1.0008
35 1 6.0707 2.2343 -0.7085
36 1 5.7192 4.4194 -1.5220
37 1 6.4050 4.8677 0.0737
38 1 4.0140 5.6530 -1.8979
39 1 5.2050 7.1558 -0.1390
40 1 2.2554 7.9354 -0.0420
41 1 3.1898 7.2389 1.3034
42 1 4.7282 9.1822 1.2422
43 1 3.0469 9.7064 1.5027
44 1 2.8276 10.2055 -0.9159
45 1 3.5048 14.0104 1.7623
46 1 5.7769 9.4251 -1.0126
47 1 4.8432 10.1224 -2.3578
48 1 4.9855 7.6546 -2.5574
49 1 3.3042 8.1787 -2.2969
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001173333551.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:57:09
Heat of formation + Delta-G solvation = -25.566867 kcal
Electronic energy + Delta-G solvation = -26345.289915 eV
Core-core repulsion = 22850.406106 eV
Total energy + Delta-G solvation = -3494.883810 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.71041 -39.18373 -38.04191 -35.57138 -33.74930 -32.21558 -31.07206 -30.13746
-29.00542 -28.66823 -27.52639 -25.56599 -23.71904 -22.95200 -22.23207 -21.00386
-20.68881 -20.21237 -18.92645 -17.86509 -16.65187 -16.50761 -16.27298 -15.97181
-15.49027 -15.05586 -14.80565 -14.48313 -13.85791 -13.66524 -13.54604 -13.36919
-13.20506 -13.08094 -12.82917 -12.57093 -12.41114 -12.18466 -11.98822 -11.96167
-11.69936 -11.58518 -11.37504 -11.13840 -10.95113 -10.76721 -10.63541 -10.56402
-10.44359 -9.99104 -9.78079 -9.48831 -8.99025 -8.92785 -8.86121 -8.48653
-8.25389 -8.17232 -6.03306 -4.01660 1.18452 1.32034 2.98641 3.30546
3.41559 3.44479 3.58101 4.18093 4.40319 4.45290 4.45980 4.67185
4.80067 4.84564 4.87957 4.97408 5.08162 5.15480 5.18997 5.22361
5.29349 5.32680 5.35597 5.50821 5.56007 5.68175 5.72219 5.75664
5.87469 5.97102 6.00417 6.10621 6.15029 6.16318 6.23170 6.29039
6.31670 6.33975 6.57653 6.58950 6.60516 6.69523 6.76768 6.96058
7.06156 7.18924 7.27282 7.32751 7.54192 7.62763 7.83717 8.57477
9.01225 9.60175 11.10160
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.020761 B = 0.002857 C = 0.002630
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1348.353807 B = 9798.788824 C =10643.731953
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.321 6.321
3 C 0.124 3.876
4 C -0.212 4.212
5 C -0.043 4.043
6 C -0.114 4.114
7 C -0.061 4.061
8 C -0.146 4.146
9 C -0.077 4.077
10 C -0.149 4.149
11 C 0.129 3.871
12 H 0.093 0.907
13 N -0.679 5.679
14 C 0.093 3.907
15 C -0.106 4.106
16 C -0.120 4.120
17 C 0.014 3.986
18 C -0.512 4.512
19 H 0.072 0.928
20 C 0.067 3.933
21 N -0.904 5.904
22 Si 0.888 3.112
23 H -0.280 1.280
24 H -0.300 1.300
25 H -0.264 1.264
26 C -0.095 4.095
27 C -0.119 4.119
28 H 0.055 0.945
29 H 0.055 0.945
30 H 0.098 0.902
31 H 0.127 0.873
32 H 0.129 0.871
33 H 0.125 0.875
34 H 0.082 0.918
35 H 0.075 0.925
36 H 0.074 0.926
37 H 0.078 0.922
38 H 0.340 0.660
39 H 0.043 0.957
40 H 0.060 0.940
41 H 0.045 0.955
42 H 0.056 0.944
43 H 0.046 0.954
44 H 0.026 0.974
45 H 0.262 0.738
46 H 0.052 0.948
47 H 0.055 0.945
48 H 0.047 0.953
49 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.669 -26.740 -3.013 27.041
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.234 6.234
3 C 0.079 3.921
4 C -0.231 4.231
5 C -0.061 4.061
6 C -0.115 4.115
7 C -0.062 4.062
8 C -0.164 4.164
9 C -0.115 4.115
10 C -0.188 4.188
11 C 0.019 3.981
12 H 0.110 0.890
13 N -0.309 5.309
14 C -0.016 4.016
15 C -0.144 4.144
16 C -0.158 4.158
17 C -0.004 4.004
18 C -0.550 4.550
19 H 0.090 0.910
20 C -0.134 4.134
21 N -0.543 5.543
22 Si 0.719 3.281
23 H -0.207 1.207
24 H -0.227 1.227
25 H -0.189 1.189
26 C -0.134 4.134
27 C -0.157 4.157
28 H 0.073 0.927
29 H 0.074 0.926
30 H 0.116 0.884
31 H 0.145 0.855
32 H 0.147 0.853
33 H 0.143 0.857
34 H 0.101 0.899
35 H 0.094 0.906
36 H 0.093 0.907
37 H 0.096 0.904
38 H 0.159 0.841
39 H 0.061 0.939
40 H 0.079 0.921
41 H 0.064 0.936
42 H 0.075 0.925
43 H 0.064 0.936
44 H 0.044 0.956
45 H 0.072 0.928
46 H 0.071 0.929
47 H 0.074 0.926
48 H 0.066 0.934
49 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -3.237 -26.672 -2.612 26.995
hybrid contribution -0.275 -0.206 0.364 0.500
sum -3.512 -26.878 -2.249 27.200
Atomic orbital electron populations
1.23035 0.78421 1.03746 1.01465 1.86031 1.21332 1.27082 1.88995
1.18793 0.92047 0.84070 0.97194 1.21152 0.99871 0.92177 1.09905
1.20458 0.93510 0.96981 0.95166 1.20401 0.93464 0.94588 1.03057
1.20319 0.96091 0.92284 0.97476 1.19670 0.91136 0.97454 1.08167
1.20986 0.91837 0.96467 1.02199 1.23055 0.98621 0.95442 1.01671
1.21044 0.89757 0.89864 0.97440 0.88960 1.60522 1.63800 1.01441
1.05144 1.21551 0.96514 0.86981 0.96553 1.21596 0.99008 0.96542
0.97248 1.21971 1.00157 0.93497 1.00132 1.19143 0.95522 0.94347
0.91438 1.21105 1.10412 0.97862 1.25615 0.91020 1.25038 0.97398
0.94691 0.96246 1.69907 1.39598 1.10190 1.34597 0.86831 0.83838
0.77618 0.79856 1.20733 1.22745 1.18909 1.21398 0.99425 0.93031
0.99512 1.21772 1.01230 0.96921 0.95794 0.92652 0.92626 0.88382
0.85536 0.85332 0.85718 0.89925 0.90622 0.90743 0.90355 0.84125
0.93852 0.92078 0.93642 0.92509 0.93600 0.95600 0.92791 0.92925
0.92610 0.93396 0.91702
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.19 9.81 101.05 0.99 1.18 16
2 O -0.32 -3.32 10.50 -19.41 -0.20 -3.53 16
3 C 0.12 1.39 6.68 -39.26 -0.26 1.13 16
4 C -0.21 -2.30 9.04 -39.48 -0.36 -2.65 16
5 C -0.04 -0.51 9.99 -39.55 -0.40 -0.90 16
6 C -0.11 -1.36 5.79 -104.16 -0.60 -1.96 16
7 C -0.06 -0.67 6.13 -104.21 -0.64 -1.31 16
8 C -0.15 -1.61 9.98 -39.39 -0.39 -2.00 16
9 C -0.08 -0.69 6.77 -26.84 -0.18 -0.87 16
10 C -0.15 -1.42 6.65 -25.32 -0.17 -1.59 16
11 C 0.13 1.50 2.95 -67.82 -0.20 1.30 16
12 H 0.09 1.17 7.30 -51.93 -0.38 0.79 16
13 N -0.68 -8.62 6.09 -99.85 -0.61 -9.23 16
14 C 0.09 1.38 2.34 -67.71 -0.16 1.22 16
15 C -0.11 -1.85 5.43 -26.73 -0.15 -1.99 16
16 C -0.12 -2.54 4.69 -26.73 -0.13 -2.67 16
17 C 0.01 0.33 1.69 -91.77 -0.16 0.17 16
18 C -0.51 -14.33 9.14 -34.44 -0.31 -14.65 16
19 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16
20 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16
21 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16
22 Si 0.89 22.26 24.37 -169.99 -4.14 18.12 16
23 H -0.28 -6.86 6.87 56.52 0.39 -6.47 16
24 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16
25 H -0.26 -6.35 6.53 56.52 0.37 -5.99 16
26 C -0.10 -1.84 5.14 -26.73 -0.14 -1.97 16
27 C -0.12 -1.85 5.18 -26.73 -0.14 -1.99 16
28 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16
29 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16
30 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16
31 H 0.13 1.10 6.31 -52.48 -0.33 0.77 16
32 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16
33 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16
34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16
35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16
36 H 0.07 0.69 7.62 -51.93 -0.40 0.29 16
37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16
38 H 0.34 3.97 7.73 -39.29 -0.30 3.67 16
39 H 0.04 0.65 7.79 -51.93 -0.40 0.25 16
40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
41 H 0.04 0.74 7.59 -51.93 -0.39 0.35 16
42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16
43 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16
44 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16
45 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16
46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
47 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16
48 H 0.05 0.64 8.12 -51.93 -0.42 0.22 16
49 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
LS Contribution 372.22 15.07 5.61 5.61
Total: -1.00 -30.93 372.22 -10.27 -41.20
By element:
Atomic # 1 Polarization: 10.87 SS G_CDS: -8.22 Total: 2.65 kcal
Atomic # 6 Polarization: -24.22 SS G_CDS: -3.48 Total: -27.70 kcal
Atomic # 7 Polarization: -36.52 SS G_CDS: 0.17 Total: -36.35 kcal
Atomic # 8 Polarization: -3.32 SS G_CDS: -0.20 Total: -3.53 kcal
Atomic # 14 Polarization: 22.26 SS G_CDS: -4.14 Total: 18.12 kcal
Total LS contribution 5.61 Total: 5.61 kcal
Total: -30.93 -10.27 -41.20 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001173333551.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.633 kcal
(2) G-P(sol) polarization free energy of solvation -30.927 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.294 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.200 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.567 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds