Wall clock time and date at job start Tue Mar 31 2020 12:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 116.99781 * 2 1 4 4 C 1.38753 * 120.05890 * 359.97438 * 3 2 1 5 5 C 1.38118 * 119.94817 * 180.02562 * 4 3 2 6 6 C 1.38294 * 120.05698 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.10901 * 0.04069 * 6 5 4 8 8 C 1.50695 * 119.97171 * 179.97438 * 7 6 5 9 9 N 1.46897 * 115.55030 * 156.55154 * 8 7 6 10 10 C 1.46897 * 111.00101 * 275.70399 * 9 8 7 11 11 C 1.52999 * 109.47248 * 118.41866 * 10 9 8 12 12 C 1.53003 * 109.47407 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.46543 * 299.99741 * 12 11 10 14 14 C 1.50704 * 109.46647 * 180.02562 * 13 12 11 15 15 H 1.08007 * 119.99545 * 240.00222 * 14 13 12 16 16 C 1.37868 * 120.00181 * 59.99947 * 14 13 12 17 17 N 1.31515 * 120.00108 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99872 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47479 * 90.00043 * 18 16 14 20 20 H 1.48507 * 109.47118 * 209.99889 * 18 16 14 21 21 H 1.48507 * 109.47283 * 329.99743 * 18 16 14 22 22 C 1.52999 * 109.47057 * 60.00046 * 13 12 11 23 23 C 1.52990 * 109.47372 * 299.99603 * 22 13 12 24 24 C 1.53002 * 117.51723 * 302.25393 * 8 7 6 25 25 C 1.52997 * 60.00171 * 107.48116 * 24 8 7 26 26 C 1.38175 * 120.05465 * 0.23727 * 7 6 5 27 27 H 1.08998 * 109.47227 * 300.00378 * 1 2 3 28 28 H 1.09001 * 109.46845 * 60.00525 * 1 2 3 29 29 H 1.09000 * 109.46697 * 180.02562 * 1 2 3 30 30 H 1.08009 * 120.02413 * 0.03871 * 4 3 2 31 31 H 1.08009 * 119.97560 * 179.97438 * 5 4 3 32 32 H 1.07999 * 119.94157 * 180.02562 * 6 5 4 33 33 H 1.00898 * 111.00337 * 39.66189 * 9 8 7 34 34 H 1.09000 * 109.47290 * 358.41633 * 10 9 8 35 35 H 1.09001 * 109.46750 * 299.99828 * 11 10 9 36 36 H 1.09000 * 109.47678 * 59.99814 * 11 10 9 37 37 H 1.08994 * 109.47373 * 179.97438 * 12 11 10 38 38 H 1.09000 * 109.47156 * 59.99124 * 12 11 10 39 39 H 1.08992 * 109.47211 * 299.99439 * 13 12 11 40 40 H 0.97003 * 119.99672 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.46907 * 179.97438 * 22 13 12 42 42 H 1.09000 * 109.47166 * 60.00106 * 22 13 12 43 43 H 1.09000 * 109.47386 * 300.00368 * 23 22 13 44 44 H 1.09003 * 109.47524 * 180.02562 * 23 22 13 45 45 H 1.09003 * 117.49875 * 214.97085 * 24 8 7 46 46 H 1.08997 * 117.50079 * 359.97438 * 24 8 7 47 47 H 1.09003 * 117.49779 * 252.51240 * 25 24 8 48 48 H 1.09001 * 117.51806 * 107.48037 * 25 24 8 49 49 H 1.08003 * 120.02236 * 179.74259 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9207 3.6047 -0.0011 6 6 3.3019 3.6759 -0.0005 7 6 4.0559 2.5172 -0.0003 8 6 5.5607 2.5984 -0.0003 9 7 6.2588 1.4185 0.5273 10 6 6.3599 1.4776 1.9916 11 6 5.6186 0.2867 2.6025 12 6 5.7233 0.3486 4.1277 13 6 7.1959 0.2988 4.5401 14 6 7.2990 0.3591 6.0424 15 1 7.8392 1.1665 6.5146 16 6 6.7038 -0.6162 6.8140 17 7 6.0464 -1.5995 6.2390 18 14 6.8310 -0.5409 8.6761 19 1 5.6883 0.2364 9.2195 20 1 6.8008 -1.9183 9.2304 21 1 8.1052 0.1189 9.0590 22 6 7.9371 1.4897 3.9292 23 6 7.8324 1.4278 2.4042 24 6 6.2276 3.3593 -1.1480 25 6 6.1944 3.9673 0.2556 26 6 3.4311 1.2849 -0.0056 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2127 2.3203 -0.0003 31 1 1.3338 4.5114 -0.0019 32 1 3.7920 4.6382 -0.0005 33 1 5.8057 0.5673 0.2302 34 1 5.9139 2.4056 2.3494 35 1 4.5695 0.3224 2.3089 36 1 6.0645 -0.6413 2.2447 37 1 5.1948 -0.4995 4.5629 38 1 5.2771 1.2766 4.4851 39 1 7.6421 -0.6292 4.1827 40 1 5.6273 -2.2854 6.7819 41 1 8.9861 1.4544 4.2234 42 1 7.4909 2.4176 4.2867 43 1 8.2786 0.4998 2.0466 44 1 8.3609 2.2760 1.9689 45 1 7.1844 2.9844 -1.5116 46 1 5.5780 3.8011 -1.9036 47 1 5.5228 4.8093 0.4236 48 1 7.1291 3.9924 0.8158 49 1 4.0207 0.3800 -0.0096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173334261.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:16 Heat of formation + Delta-G solvation = -0.109669 kcal Electronic energy + Delta-G solvation = -26966.711322 eV Core-core repulsion = 23472.931419 eV Total energy + Delta-G solvation = -3493.779903 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -40.48495 -39.06227 -37.50456 -36.25287 -33.43423 -31.78234 -30.92887 -29.91394 -29.55477 -28.01790 -27.33489 -24.36743 -23.19005 -22.71716 -22.08585 -21.49499 -20.52580 -19.62996 -18.74928 -17.90626 -16.34284 -16.32412 -16.23525 -15.85332 -15.59755 -14.86961 -14.73522 -14.46407 -13.89212 -13.61459 -13.29901 -13.16522 -13.08838 -12.88075 -12.57689 -12.30799 -12.05338 -11.89706 -11.76410 -11.42658 -11.26444 -11.22166 -10.97662 -10.93336 -10.74858 -10.70001 -10.41281 -10.39452 -10.11013 -10.03910 -9.75392 -9.32344 -8.90782 -8.75892 -8.55092 -8.29229 -8.25449 -8.05589 -5.91240 -3.97137 1.19548 1.37052 3.13382 3.33839 3.40533 3.43909 3.52130 3.97296 4.24608 4.49190 4.50081 4.66144 4.89014 4.93583 4.96291 4.98119 5.04086 5.22932 5.28538 5.36247 5.37900 5.49126 5.50760 5.65662 5.70835 5.75977 5.87306 5.93508 6.06192 6.19344 6.20718 6.26347 6.32057 6.36795 6.42383 6.50620 6.55065 6.65152 6.73958 6.76431 6.90023 7.01045 7.21135 7.29274 7.31293 7.45533 7.61715 7.66343 7.82557 8.11219 8.23658 8.55557 9.07304 9.67128 11.14144 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012555 B = 0.003838 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.645355 B = 7293.629804 C = 8754.913646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.134 3.866 4 C -0.216 4.216 5 C -0.077 4.077 6 C -0.156 4.156 7 C -0.022 4.022 8 C 0.073 3.927 9 N -0.649 5.649 10 C 0.094 3.906 11 C -0.133 4.133 12 C -0.103 4.103 13 C 0.049 3.951 14 C -0.511 4.511 15 H 0.053 0.947 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.887 3.113 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.109 4.109 23 C -0.097 4.097 24 C -0.148 4.148 25 C -0.160 4.160 26 C -0.145 4.145 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.099 0.901 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.343 0.657 34 H 0.060 0.940 35 H 0.041 0.959 36 H 0.056 0.944 37 H 0.091 0.909 38 H 0.030 0.970 39 H 0.024 0.976 40 H 0.258 0.742 41 H 0.046 0.954 42 H 0.044 0.956 43 H 0.056 0.944 44 H 0.044 0.956 45 H 0.104 0.896 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.105 0.895 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.162 8.931 -16.585 20.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.088 3.912 4 C -0.235 4.235 5 C -0.096 4.096 6 C -0.175 4.175 7 C -0.024 4.024 8 C -0.020 4.020 9 N -0.279 5.279 10 C -0.015 4.015 11 C -0.172 4.172 12 C -0.142 4.142 13 C 0.031 3.969 14 C -0.550 4.550 15 H 0.071 0.929 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.715 3.285 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.147 4.147 23 C -0.135 4.135 24 C -0.186 4.186 25 C -0.198 4.198 26 C -0.164 4.164 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.164 0.836 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.049 0.951 39 H 0.043 0.957 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.122 0.878 46 H 0.110 0.890 47 H 0.114 0.886 48 H 0.123 0.877 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.528 8.801 -16.637 20.663 hybrid contribution -1.334 -0.150 1.393 1.934 sum -9.862 8.651 -15.244 20.111 Atomic orbital electron populations 1.23046 0.78488 1.03960 1.01185 1.86102 1.21297 1.26869 1.88586 1.18933 0.92127 0.84205 0.95894 1.21190 0.99866 0.92460 1.09940 1.20871 0.94434 0.96889 0.97368 1.20915 0.93622 0.98081 1.04846 1.19474 0.94305 0.92408 0.96201 1.20096 0.86371 0.91450 1.04092 1.60588 1.52930 1.02689 1.11679 1.21645 0.96855 0.98718 0.84265 1.22138 0.97777 0.97150 1.00125 1.21539 1.00947 1.01716 0.89998 1.18646 0.91238 0.92667 0.94380 1.21261 1.32980 1.09155 0.91558 0.92883 1.24961 0.95400 0.95432 0.98213 1.69884 1.35408 1.12896 1.34814 0.86677 0.78379 0.77129 0.86284 1.20838 1.21319 1.19982 1.21634 0.99903 1.00427 0.92747 1.21521 0.94641 1.00636 0.96742 1.23153 1.02375 1.01863 0.91190 1.23176 1.02886 0.94197 0.99510 1.20145 0.91398 0.98259 1.06608 0.92618 0.92828 0.88217 0.85667 0.85865 0.85752 0.83626 0.92205 0.94035 0.92532 0.89117 0.95107 0.95739 0.93183 0.93493 0.93743 0.92548 0.93693 0.87809 0.88960 0.88563 0.87713 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.13 10.50 -19.41 -0.20 -4.33 16 3 C 0.13 1.80 6.69 -39.22 -0.26 1.54 16 4 C -0.22 -2.47 9.04 -39.44 -0.36 -2.83 16 5 C -0.08 -0.84 10.04 -39.60 -0.40 -1.24 16 6 C -0.16 -1.83 9.26 -39.56 -0.37 -2.20 16 7 C -0.02 -0.29 5.59 -104.65 -0.59 -0.87 16 8 C 0.07 0.95 2.03 -132.75 -0.27 0.68 16 9 N -0.65 -9.66 6.47 -94.21 -0.61 -10.27 16 10 C 0.09 1.63 2.44 -67.71 -0.16 1.46 16 11 C -0.13 -2.64 5.02 -26.73 -0.13 -2.77 16 12 C -0.10 -2.48 4.98 -26.73 -0.13 -2.62 16 13 C 0.05 1.24 2.10 -91.77 -0.19 1.04 16 14 C -0.51 -14.28 8.56 -34.44 -0.29 -14.57 16 15 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 16 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 17 N -0.89 -25.82 11.32 55.43 0.63 -25.20 16 18 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.11 -2.32 5.14 -26.74 -0.14 -2.46 16 23 C -0.10 -1.77 5.53 -26.73 -0.15 -1.92 16 24 C -0.15 -1.62 10.06 -26.73 -0.27 -1.89 16 25 C -0.16 -1.88 8.93 -26.73 -0.24 -2.12 16 26 C -0.15 -2.05 8.72 -39.43 -0.34 -2.40 16 27 H 0.06 0.44 7.66 -51.93 -0.40 0.05 16 28 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 29 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.13 1.13 6.30 -52.48 -0.33 0.80 16 31 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 32 H 0.12 1.24 6.07 -52.49 -0.32 0.92 16 33 H 0.34 5.06 6.05 -39.29 -0.24 4.82 16 34 H 0.06 1.10 7.12 -51.93 -0.37 0.73 16 35 H 0.04 0.79 7.45 -51.93 -0.39 0.41 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 46 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.10 0.98 6.23 -51.93 -0.32 0.66 16 48 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 49 H 0.13 1.85 6.26 -52.48 -0.33 1.52 16 LS Contribution 378.94 15.07 5.71 5.71 Total: -1.00 -29.93 378.94 -10.91 -40.84 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -8.02 Total: 6.96 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: -3.40 Total: -30.31 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.02 Total: -35.47 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -0.20 Total: -4.33 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.93 -10.91 -40.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334261.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.731 kcal (2) G-P(sol) polarization free energy of solvation -29.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds