Wall clock time and date at job start Tue Mar 31 2020 12:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 116.99781 * 2 1 4 4 C 1.38753 * 120.05890 * 359.97438 * 3 2 1 5 5 C 1.38118 * 119.94817 * 180.02562 * 4 3 2 6 6 C 1.38294 * 120.05698 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.10901 * 0.04069 * 6 5 4 8 8 C 1.50695 * 119.97171 * 179.97438 * 7 6 5 9 9 N 1.46897 * 115.55030 * 156.55154 * 8 7 6 10 10 C 1.46897 * 111.00101 * 275.70399 * 9 8 7 11 11 C 1.52999 * 109.47248 * 118.41866 * 10 9 8 12 12 C 1.53003 * 109.47407 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.46543 * 299.99741 * 12 11 10 14 14 C 1.50704 * 109.46647 * 180.02562 * 13 12 11 15 15 H 1.08007 * 119.99545 * 240.00222 * 14 13 12 16 16 C 1.37868 * 120.00181 * 59.99947 * 14 13 12 17 17 N 1.31515 * 120.00108 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99872 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47479 * 90.00043 * 18 16 14 20 20 H 1.48507 * 109.47118 * 209.99889 * 18 16 14 21 21 H 1.48507 * 109.47283 * 329.99743 * 18 16 14 22 22 C 1.52999 * 109.47057 * 60.00046 * 13 12 11 23 23 C 1.52990 * 109.47372 * 299.99603 * 22 13 12 24 24 C 1.53002 * 117.51723 * 302.25393 * 8 7 6 25 25 C 1.52997 * 60.00171 * 107.48116 * 24 8 7 26 26 C 1.38175 * 120.05465 * 0.23727 * 7 6 5 27 27 H 1.08998 * 109.47227 * 300.00378 * 1 2 3 28 28 H 1.09001 * 109.46845 * 60.00525 * 1 2 3 29 29 H 1.09000 * 109.46697 * 180.02562 * 1 2 3 30 30 H 1.08009 * 120.02413 * 0.03871 * 4 3 2 31 31 H 1.08009 * 119.97560 * 179.97438 * 5 4 3 32 32 H 1.07999 * 119.94157 * 180.02562 * 6 5 4 33 33 H 1.00898 * 111.00337 * 39.66189 * 9 8 7 34 34 H 1.09000 * 109.47290 * 358.41633 * 10 9 8 35 35 H 1.09001 * 109.46750 * 299.99828 * 11 10 9 36 36 H 1.09000 * 109.47678 * 59.99814 * 11 10 9 37 37 H 1.08994 * 109.47373 * 179.97438 * 12 11 10 38 38 H 1.09000 * 109.47156 * 59.99124 * 12 11 10 39 39 H 1.08992 * 109.47211 * 299.99439 * 13 12 11 40 40 H 0.97003 * 119.99672 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.46907 * 179.97438 * 22 13 12 42 42 H 1.09000 * 109.47166 * 60.00106 * 22 13 12 43 43 H 1.09000 * 109.47386 * 300.00368 * 23 22 13 44 44 H 1.09003 * 109.47524 * 180.02562 * 23 22 13 45 45 H 1.09003 * 117.49875 * 214.97085 * 24 8 7 46 46 H 1.08997 * 117.50079 * 359.97438 * 24 8 7 47 47 H 1.09003 * 117.49779 * 252.51240 * 25 24 8 48 48 H 1.09001 * 117.51806 * 107.48037 * 25 24 8 49 49 H 1.08003 * 120.02236 * 179.74259 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9207 3.6047 -0.0011 6 6 3.3019 3.6759 -0.0005 7 6 4.0559 2.5172 -0.0003 8 6 5.5607 2.5984 -0.0003 9 7 6.2588 1.4185 0.5273 10 6 6.3599 1.4776 1.9916 11 6 5.6186 0.2867 2.6025 12 6 5.7233 0.3486 4.1277 13 6 7.1959 0.2988 4.5401 14 6 7.2990 0.3591 6.0424 15 1 7.8392 1.1665 6.5146 16 6 6.7038 -0.6162 6.8140 17 7 6.0464 -1.5995 6.2390 18 14 6.8310 -0.5409 8.6761 19 1 5.6883 0.2364 9.2195 20 1 6.8008 -1.9183 9.2304 21 1 8.1052 0.1189 9.0590 22 6 7.9371 1.4897 3.9292 23 6 7.8324 1.4278 2.4042 24 6 6.2276 3.3593 -1.1480 25 6 6.1944 3.9673 0.2556 26 6 3.4311 1.2849 -0.0056 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2127 2.3203 -0.0003 31 1 1.3338 4.5114 -0.0019 32 1 3.7920 4.6382 -0.0005 33 1 5.8057 0.5673 0.2302 34 1 5.9139 2.4056 2.3494 35 1 4.5695 0.3224 2.3089 36 1 6.0645 -0.6413 2.2447 37 1 5.1948 -0.4995 4.5629 38 1 5.2771 1.2766 4.4851 39 1 7.6421 -0.6292 4.1827 40 1 5.6273 -2.2854 6.7819 41 1 8.9861 1.4544 4.2234 42 1 7.4909 2.4176 4.2867 43 1 8.2786 0.4998 2.0466 44 1 8.3609 2.2760 1.9689 45 1 7.1844 2.9844 -1.5116 46 1 5.5780 3.8011 -1.9036 47 1 5.5228 4.8093 0.4236 48 1 7.1291 3.9924 0.8158 49 1 4.0207 0.3800 -0.0096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173334261.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:14 Heat of formation + Delta-G solvation = -15.861803 kcal Electronic energy + Delta-G solvation = -26967.394386 eV Core-core repulsion = 23472.931419 eV Total energy + Delta-G solvation = -3494.462966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -41.41859 -40.16380 -38.91162 -37.29748 -35.18185 -33.38069 -31.98598 -31.31670 -30.76154 -29.63790 -28.13908 -26.25580 -24.11800 -23.77231 -23.21580 -22.96981 -22.10138 -20.69792 -20.37455 -18.91285 -18.38941 -17.24084 -17.22449 -16.74102 -16.65798 -16.51714 -16.10526 -15.73198 -15.10563 -14.85587 -14.62112 -14.56173 -14.29873 -14.12545 -13.88464 -13.79489 -13.45992 -13.08553 -12.89130 -12.78125 -12.77603 -12.57729 -12.45217 -12.23277 -12.21066 -12.00700 -11.84512 -11.80532 -11.57949 -11.52054 -11.28599 -11.08195 -10.74553 -10.57062 -10.37898 -9.63549 -9.40653 -9.14523 -8.06596 -6.21110 0.29487 0.46207 1.39901 1.40289 1.50845 2.33341 2.43443 2.62056 2.93149 3.19120 3.23011 3.59117 3.83261 3.93169 4.02516 4.07753 4.13751 4.19843 4.25126 4.34327 4.35538 4.43273 4.49215 4.54838 4.62881 4.67610 4.68429 4.80257 4.82468 4.85004 4.87867 4.94696 4.98770 5.08324 5.12424 5.23512 5.31343 5.31859 5.36262 5.39751 5.46857 5.47070 5.55859 5.62503 5.68823 5.80270 6.04059 6.17133 6.19431 6.40732 6.42965 6.45881 6.91983 7.46936 8.97072 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012555 B = 0.003838 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.645355 B = 7293.629804 C = 8754.913646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.115 3.885 4 C -0.218 4.218 5 C -0.075 4.075 6 C -0.162 4.162 7 C -0.031 4.031 8 C 0.049 3.951 9 N -0.645 5.645 10 C 0.111 3.889 11 C -0.120 4.120 12 C -0.094 4.094 13 C 0.047 3.953 14 C -0.535 4.535 15 H 0.051 0.949 16 C 0.011 3.989 17 N -0.918 5.918 18 Si 0.951 3.049 19 H -0.276 1.276 20 H -0.284 1.284 21 H -0.267 1.267 22 C -0.101 4.101 23 C -0.088 4.088 24 C -0.129 4.129 25 C -0.157 4.157 26 C -0.173 4.173 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.114 0.886 30 H 0.149 0.851 31 H 0.155 0.845 32 H 0.145 0.855 33 H 0.343 0.657 34 H 0.055 0.945 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.021 0.979 39 H -0.009 1.009 40 H 0.259 0.741 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.049 0.951 44 H 0.069 0.931 45 H 0.104 0.896 46 H 0.110 0.890 47 H 0.114 0.886 48 H 0.097 0.903 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.844 11.309 -17.423 22.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.257 6.257 3 C 0.070 3.930 4 C -0.237 4.237 5 C -0.093 4.093 6 C -0.180 4.180 7 C -0.033 4.033 8 C -0.043 4.043 9 N -0.274 5.274 10 C 0.002 3.998 11 C -0.159 4.159 12 C -0.133 4.133 13 C 0.028 3.972 14 C -0.573 4.573 15 H 0.069 0.931 16 C -0.187 4.187 17 N -0.558 5.558 18 Si 0.777 3.223 19 H -0.202 1.202 20 H -0.209 1.209 21 H -0.192 1.192 22 C -0.139 4.139 23 C -0.127 4.127 24 C -0.167 4.167 25 C -0.194 4.194 26 C -0.192 4.192 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.132 0.868 30 H 0.166 0.834 31 H 0.173 0.827 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.009 0.991 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.088 0.912 45 H 0.122 0.878 46 H 0.128 0.872 47 H 0.132 0.868 48 H 0.115 0.885 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.209 11.189 -17.490 22.713 hybrid contribution -1.177 -0.921 1.630 2.211 sum -10.386 10.268 -15.860 21.560 Atomic orbital electron populations 1.23324 0.76432 1.05418 1.02285 1.86061 1.23591 1.27286 1.88720 1.19166 0.92246 0.85074 0.96485 1.21506 1.01067 0.92009 1.09113 1.21288 0.94459 0.97815 0.95747 1.21199 0.94169 0.98280 1.04363 1.19549 0.94420 0.92654 0.96646 1.20251 0.86558 0.91236 1.06248 1.60546 1.53634 1.03757 1.09461 1.21336 0.95667 0.96839 0.86003 1.21967 0.98508 0.98241 0.97180 1.21314 0.99675 0.99524 0.92774 1.18613 0.92146 0.92871 0.93551 1.21653 1.33116 1.09279 0.93224 0.93054 1.25752 0.95030 0.95088 1.02841 1.70038 1.35930 1.13426 1.36386 0.85659 0.78659 0.77249 0.80720 1.20198 1.20930 1.19178 1.21498 0.99192 0.98439 0.94781 1.21424 0.95472 1.01327 0.94443 1.23204 1.02247 1.00195 0.91049 1.23266 1.02615 0.93667 0.99822 1.20213 0.92079 0.98308 1.08606 0.92069 0.91036 0.86761 0.83363 0.82701 0.83722 0.83711 0.92661 0.93668 0.93394 0.92663 0.95971 0.99066 0.93213 0.93461 0.93557 0.93230 0.91202 0.87756 0.87177 0.86792 0.88465 0.86828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.34 -9.05 10.50 -92.39 -0.97 -10.01 16 3 C 0.12 3.08 6.69 22.51 0.15 3.23 16 4 C -0.22 -4.59 9.04 22.36 0.20 -4.39 16 5 C -0.08 -1.42 10.04 22.25 0.22 -1.19 16 6 C -0.16 -3.39 9.26 22.28 0.21 -3.18 16 7 C -0.03 -0.78 5.59 -19.88 -0.11 -0.89 16 8 C 0.05 1.22 2.03 2.78 0.01 1.23 16 9 N -0.64 -18.82 6.47 -451.97 -2.92 -21.74 16 10 C 0.11 3.83 2.44 44.92 0.11 3.94 16 11 C -0.12 -4.92 5.02 30.60 0.15 -4.76 16 12 C -0.09 -4.70 4.98 30.60 0.15 -4.55 16 13 C 0.05 2.43 2.10 -11.54 -0.02 2.40 16 14 C -0.53 -30.54 8.56 25.60 0.22 -30.32 16 15 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 16 C 0.01 0.63 5.30 84.65 0.45 1.08 16 17 N -0.92 -54.91 11.32 21.44 0.24 -54.66 16 18 Si 0.95 44.82 29.54 68.60 2.03 46.84 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 22 C -0.10 -4.31 5.14 30.59 0.16 -4.15 16 23 C -0.09 -3.17 5.53 30.59 0.17 -3.00 16 24 C -0.13 -2.49 10.06 30.59 0.31 -2.19 16 25 C -0.16 -3.25 8.93 30.59 0.27 -2.97 16 26 C -0.17 -4.95 8.72 22.37 0.20 -4.75 16 27 H 0.06 0.90 7.66 -2.39 -0.02 0.88 16 28 H 0.07 0.88 7.66 -2.39 -0.02 0.86 16 29 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.15 2.29 6.30 -2.91 -0.02 2.27 16 31 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 32 H 0.15 2.35 6.07 -2.91 -0.02 2.33 16 33 H 0.34 10.23 6.05 -89.70 -0.54 9.69 16 34 H 0.06 1.99 7.12 -2.39 -0.02 1.97 16 35 H 0.04 1.79 7.45 -2.39 -0.02 1.78 16 36 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.05 3.14 6.07 -2.39 -0.01 3.13 16 38 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 39 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 40 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 41 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.11 1.93 6.23 -2.39 -0.01 1.92 16 48 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 49 H 0.11 3.45 6.26 -2.91 -0.02 3.43 16 Total: -1.00 -66.51 378.94 2.72 -63.79 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.39 Total: 28.82 kcal Atomic # 6 Polarization: -56.98 SS G_CDS: 3.95 Total: -53.03 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -2.68 Total: -76.41 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.97 Total: -10.01 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -66.51 2.72 -63.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334261.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.926 kcal (2) G-P(sol) polarization free energy of solvation -66.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds