Wall clock time and date at job start Tue Mar 31 2020 11:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99975 * 2 1 4 4 C 1.52995 * 109.47079 * 293.95603 * 3 2 1 5 5 H 1.08997 * 110.80940 * 308.31038 * 4 3 2 6 6 C 1.54712 * 110.74922 * 185.00008 * 4 3 2 7 7 C 1.51645 * 101.94009 * 216.33367 * 6 4 3 8 8 C 1.37743 * 132.17834 * 195.70623 * 7 6 4 9 9 C 1.38354 * 119.97557 * 179.66516 * 8 7 6 10 10 C 1.38286 * 119.76840 * 359.97438 * 9 8 7 11 11 C 1.37930 * 120.34924 * 0.17257 * 10 9 8 12 12 C 1.38886 * 107.03256 * 15.65574 * 7 6 4 13 13 O 1.36130 * 111.24924 * 0.64505 * 12 7 6 14 14 C 1.46898 * 111.00072 * 123.95356 * 2 1 3 15 15 C 1.53001 * 109.47091 * 176.04719 * 14 2 1 16 16 C 1.53001 * 109.47279 * 179.97438 * 15 14 2 17 17 C 1.53004 * 109.47008 * 59.99941 * 16 15 14 18 18 C 1.50701 * 109.46974 * 59.99984 * 17 16 15 19 19 H 1.07997 * 120.00184 * 240.00019 * 18 17 16 20 20 C 1.37875 * 119.99918 * 60.00045 * 18 17 16 21 21 N 1.31513 * 120.00127 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00115 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47042 * 60.00238 * 22 20 18 24 24 H 1.48495 * 109.47242 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47443 * 300.00400 * 22 20 18 26 26 C 1.53001 * 109.47149 * 300.00139 * 17 16 15 27 27 C 1.53001 * 109.47279 * 60.00027 * 26 17 16 28 28 H 1.08998 * 109.47002 * 60.00347 * 1 2 3 29 29 H 1.09004 * 109.46558 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47187 * 299.99407 * 1 2 3 31 31 H 1.09001 * 109.47120 * 173.95501 * 3 2 1 32 32 H 1.09001 * 109.47115 * 53.95313 * 3 2 1 33 33 H 1.09002 * 110.94497 * 98.16067 * 6 4 3 34 34 H 1.08997 * 110.93964 * 334.50388 * 6 4 3 35 35 H 1.07998 * 120.01140 * 359.62132 * 8 7 6 36 36 H 1.07999 * 120.11380 * 179.97438 * 9 8 7 37 37 H 1.07993 * 119.82414 * 180.14192 * 10 9 8 38 38 H 1.08002 * 119.87743 * 180.02562 * 11 10 9 39 39 H 1.09007 * 109.47388 * 296.04605 * 14 2 1 40 40 H 1.09000 * 109.47294 * 300.00169 * 15 14 2 41 41 H 1.09002 * 109.47337 * 60.00303 * 15 14 2 42 42 H 1.09000 * 109.47240 * 300.00379 * 16 15 14 43 43 H 1.08999 * 109.47522 * 179.97438 * 16 15 14 44 44 H 1.08997 * 109.47304 * 180.02562 * 17 16 15 45 45 H 0.97001 * 120.00174 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.47294 * 299.99681 * 26 17 16 47 47 H 1.09002 * 109.47337 * 179.97438 * 26 17 16 48 48 H 1.08997 * 109.47109 * 180.02562 * 27 26 17 49 49 H 1.09000 * 109.47240 * 59.99621 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 -1.3182 5 1 1.9282 1.4439 -2.1688 6 6 2.2777 3.4606 -1.4026 7 6 1.2039 4.2580 -2.1173 8 6 1.2283 5.4795 -2.7535 9 6 0.0779 5.9768 -3.3395 10 6 -1.0931 5.2434 -3.2839 11 6 -1.1205 4.0215 -2.6448 12 6 0.0325 3.5151 -2.0495 13 8 0.2246 2.3519 -1.3688 14 6 1.9955 -0.7660 1.1376 15 6 3.5217 -0.8263 1.0492 16 6 4.0701 -1.6235 2.2343 17 6 3.5008 -3.0433 2.2011 18 6 3.9032 -3.7159 0.9139 19 1 3.1461 -4.0653 0.2276 20 6 5.2379 -3.8851 0.6125 21 7 6.1599 -3.4600 1.4485 22 14 5.7368 -4.7194 -0.9826 23 1 5.2044 -3.9461 -2.1332 24 1 7.2181 -4.7773 -1.0688 25 1 5.1843 -6.0974 -1.0144 26 6 1.9745 -2.9830 2.2895 27 6 1.4261 -2.1857 1.1043 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 3.0797 1.3444 0.1082 32 1 1.5611 1.9274 0.8309 33 1 3.1965 3.4318 -1.9884 34 1 2.4649 3.8637 -0.4074 35 1 2.1450 6.0491 -2.7942 36 1 0.0944 6.9345 -3.8385 37 1 -1.9911 5.6297 -3.7430 38 1 -2.0392 3.4549 -2.6064 39 1 1.7044 -0.2799 2.0688 40 1 3.8128 -1.3124 0.1180 41 1 3.9274 0.1851 1.0733 42 1 3.7790 -1.1371 3.1653 43 1 5.1574 -1.6670 2.1711 44 1 3.8911 -3.6112 3.0456 45 1 7.0989 -3.5787 1.2363 46 1 1.6834 -2.4965 3.2205 47 1 1.5689 -3.9944 2.2654 48 1 0.3389 -2.1424 1.1676 49 1 1.7172 -2.6722 0.1734 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173338034.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:30 Heat of formation + Delta-G solvation = -9.739905 kcal Electronic energy + Delta-G solvation = -26862.303857 eV Core-core repulsion = 23368.106356 eV Total energy + Delta-G solvation = -3494.197501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -41.27849 -38.73267 -37.56282 -35.51258 -33.01292 -32.14047 -30.38872 -30.20608 -29.81533 -28.30385 -26.57110 -25.01505 -23.79470 -22.48970 -21.79818 -21.63740 -20.96611 -19.91051 -18.64478 -17.59197 -16.92844 -16.24531 -15.76708 -15.65660 -15.15523 -14.65536 -14.47663 -14.21205 -13.84581 -13.64753 -13.39704 -13.28144 -13.02989 -12.85552 -12.62412 -12.46346 -12.26803 -12.11147 -11.82235 -11.69377 -11.40586 -11.05022 -10.95665 -10.94258 -10.83148 -10.68718 -10.58743 -10.40216 -10.27342 -10.04409 -9.57018 -9.13285 -9.08928 -8.78464 -8.56504 -8.26277 -8.22448 -7.93558 -5.91039 -3.94645 1.09955 1.20804 3.13729 3.36510 3.40801 3.44506 3.54128 4.04021 4.29349 4.50229 4.59290 4.74896 4.85915 4.93956 5.05146 5.13955 5.21350 5.39100 5.40349 5.42470 5.54597 5.57589 5.64555 5.68531 5.79583 5.88967 5.99417 6.00226 6.07571 6.10997 6.20355 6.27613 6.31145 6.40465 6.46755 6.52127 6.55634 6.59354 6.71689 6.78853 6.86847 7.11365 7.15423 7.25454 7.43052 7.44647 7.56426 7.70509 7.80408 7.99004 8.20760 8.54905 9.07238 9.68275 11.14966 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.020205 B = 0.002979 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.477026 B = 9396.827794 C = 9901.597904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.535 5.535 3 C 0.056 3.944 4 C 0.088 3.912 5 H 0.098 0.902 6 C -0.106 4.106 7 C -0.175 4.175 8 C -0.071 4.071 9 C -0.156 4.156 10 C -0.087 4.087 11 C -0.144 4.144 12 C 0.110 3.890 13 O -0.295 6.295 14 C 0.094 3.906 15 C -0.093 4.093 16 C -0.107 4.107 17 C 0.044 3.956 18 C -0.497 4.497 19 H 0.055 0.945 20 C 0.061 3.939 21 N -0.893 5.893 22 Si 0.884 3.116 23 H -0.277 1.277 24 H -0.290 1.290 25 H -0.279 1.279 26 C -0.107 4.107 27 C -0.099 4.099 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.016 0.984 31 H 0.103 0.897 32 H 0.039 0.961 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.024 0.976 40 H 0.080 0.920 41 H 0.030 0.970 42 H 0.011 0.989 43 H 0.092 0.908 44 H 0.023 0.977 45 H 0.258 0.742 46 H 0.030 0.970 47 H 0.047 0.953 48 H 0.037 0.963 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.927 17.406 -6.623 21.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.258 5.258 3 C -0.072 4.072 4 C 0.032 3.968 5 H 0.115 0.885 6 C -0.144 4.144 7 C -0.175 4.175 8 C -0.089 4.089 9 C -0.174 4.174 10 C -0.105 4.105 11 C -0.163 4.163 12 C 0.064 3.936 13 O -0.209 6.209 14 C -0.013 4.013 15 C -0.130 4.130 16 C -0.146 4.146 17 C 0.025 3.975 18 C -0.535 4.535 19 H 0.073 0.927 20 C -0.139 4.139 21 N -0.533 5.533 22 Si 0.712 3.288 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.205 1.205 26 C -0.145 4.145 27 C -0.136 4.136 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.035 0.965 31 H 0.121 0.879 32 H 0.057 0.943 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.042 0.958 40 H 0.099 0.901 41 H 0.049 0.951 42 H 0.030 0.970 43 H 0.111 0.889 44 H 0.041 0.959 45 H 0.068 0.932 46 H 0.049 0.951 47 H 0.066 0.934 48 H 0.056 0.944 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.721 17.003 -6.917 21.258 hybrid contribution 0.181 0.070 -0.152 0.246 sum -10.541 17.073 -7.069 21.273 Atomic orbital electron populations 1.22571 0.87806 1.01720 1.00677 1.62059 1.07588 1.11353 1.44845 1.22324 1.01680 0.89478 0.93754 1.23550 0.77575 0.95160 1.00499 0.88465 1.21832 0.97894 0.93360 1.01269 1.20844 0.95956 0.97037 1.03707 1.20321 0.98558 0.93857 0.96194 1.20997 0.92781 1.00692 1.02926 1.20850 0.98270 0.93524 0.97893 1.20279 0.96953 0.97702 1.01336 1.19746 0.94807 0.86870 0.92145 1.86992 1.27413 1.37059 1.69459 1.21699 0.96888 0.93766 0.88996 1.21486 0.91544 0.97667 1.02343 1.21521 1.03713 0.96354 0.92976 1.18688 0.88671 0.92942 0.97163 1.21106 0.91389 1.36742 1.04277 0.92705 1.24919 0.96814 0.95753 0.96452 1.69857 1.00267 1.47250 1.35935 0.86786 0.77184 0.80187 0.84615 1.20261 1.21536 1.20495 1.21563 0.99759 0.97878 0.95273 1.21517 0.96806 0.94169 1.01138 0.90391 0.91258 0.96542 0.87947 0.94315 0.88821 0.89119 0.85941 0.85712 0.85406 0.85592 0.95771 0.90123 0.95143 0.97040 0.88927 0.95871 0.93195 0.95083 0.93401 0.94427 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.65 60.07 0.52 0.82 16 2 N -0.53 -8.77 4.63 -234.88 -1.09 -9.85 16 3 C 0.06 0.79 4.57 -3.83 -0.02 0.77 16 4 C 0.09 1.12 3.63 -25.83 -0.09 1.03 16 5 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 6 C -0.11 -1.13 6.64 -26.52 -0.18 -1.31 16 7 C -0.17 -1.99 6.27 -104.10 -0.65 -2.65 16 8 C -0.07 -0.69 10.03 -39.72 -0.40 -1.09 16 9 C -0.16 -1.36 10.07 -39.52 -0.40 -1.75 16 10 C -0.09 -0.78 10.02 -39.68 -0.40 -1.18 16 11 C -0.14 -1.55 10.06 -39.30 -0.40 -1.95 16 12 C 0.11 1.38 7.04 -38.95 -0.27 1.11 16 13 O -0.29 -4.06 7.96 -20.15 -0.16 -4.22 16 14 C 0.09 1.72 1.94 -67.71 -0.13 1.59 16 15 C -0.09 -1.90 4.78 -26.73 -0.13 -2.03 16 16 C -0.11 -2.47 5.24 -26.73 -0.14 -2.61 16 17 C 0.04 1.07 2.59 -91.77 -0.24 0.83 16 18 C -0.50 -13.12 6.61 -34.44 -0.23 -13.35 16 19 H 0.05 1.45 6.71 -52.49 -0.35 1.10 16 20 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 21 N -0.89 -25.06 11.32 55.43 0.63 -24.44 16 22 Si 0.88 21.17 29.54 -169.99 -5.02 16.15 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C -0.11 -2.21 5.41 -26.73 -0.14 -2.36 16 27 C -0.10 -1.90 4.63 -26.73 -0.12 -2.02 16 28 H 0.08 1.15 5.50 -51.93 -0.29 0.86 16 29 H 0.07 1.04 6.01 -51.93 -0.31 0.72 16 30 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.10 1.43 5.83 -51.93 -0.30 1.13 16 32 H 0.04 0.55 8.12 -51.93 -0.42 0.13 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 0.91 7.92 -51.93 -0.41 0.49 16 35 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 1.87 7.22 -51.93 -0.37 1.50 16 41 H 0.03 0.56 6.20 -51.93 -0.32 0.24 16 42 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 44 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 48 H 0.04 0.65 6.26 -51.93 -0.33 0.32 16 49 H 0.08 1.68 6.62 -51.93 -0.34 1.33 16 LS Contribution 366.38 15.07 5.52 5.52 Total: -1.00 -28.33 366.38 -11.61 -39.94 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.97 Total: 1.47 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: -3.51 Total: -24.57 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: -0.46 Total: -34.29 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.16 Total: -4.22 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.33 -11.61 -39.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338034.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.201 kcal (2) G-P(sol) polarization free energy of solvation -28.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds