Wall clock time and date at job start Tue Mar 31 2020 11:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99975 * 2 1 4 4 C 1.52995 * 109.47079 * 293.95603 * 3 2 1 5 5 H 1.08997 * 110.80940 * 308.31038 * 4 3 2 6 6 C 1.54712 * 110.74922 * 185.00008 * 4 3 2 7 7 C 1.51645 * 101.94009 * 216.33367 * 6 4 3 8 8 C 1.37743 * 132.17834 * 195.70623 * 7 6 4 9 9 C 1.38354 * 119.97557 * 179.66516 * 8 7 6 10 10 C 1.38286 * 119.76840 * 359.97438 * 9 8 7 11 11 C 1.37930 * 120.34924 * 0.17257 * 10 9 8 12 12 C 1.38886 * 107.03256 * 15.65574 * 7 6 4 13 13 O 1.36130 * 111.24924 * 0.64505 * 12 7 6 14 14 C 1.46898 * 111.00072 * 123.95356 * 2 1 3 15 15 C 1.53001 * 109.47091 * 176.04719 * 14 2 1 16 16 C 1.53001 * 109.47279 * 179.97438 * 15 14 2 17 17 C 1.53004 * 109.47008 * 59.99941 * 16 15 14 18 18 C 1.50701 * 109.46974 * 59.99984 * 17 16 15 19 19 H 1.07997 * 120.00184 * 240.00019 * 18 17 16 20 20 C 1.37875 * 119.99918 * 60.00045 * 18 17 16 21 21 N 1.31513 * 120.00127 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00115 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47042 * 60.00238 * 22 20 18 24 24 H 1.48495 * 109.47242 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47443 * 300.00400 * 22 20 18 26 26 C 1.53001 * 109.47149 * 300.00139 * 17 16 15 27 27 C 1.53001 * 109.47279 * 60.00027 * 26 17 16 28 28 H 1.08998 * 109.47002 * 60.00347 * 1 2 3 29 29 H 1.09004 * 109.46558 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47187 * 299.99407 * 1 2 3 31 31 H 1.09001 * 109.47120 * 173.95501 * 3 2 1 32 32 H 1.09001 * 109.47115 * 53.95313 * 3 2 1 33 33 H 1.09002 * 110.94497 * 98.16067 * 6 4 3 34 34 H 1.08997 * 110.93964 * 334.50388 * 6 4 3 35 35 H 1.07998 * 120.01140 * 359.62132 * 8 7 6 36 36 H 1.07999 * 120.11380 * 179.97438 * 9 8 7 37 37 H 1.07993 * 119.82414 * 180.14192 * 10 9 8 38 38 H 1.08002 * 119.87743 * 180.02562 * 11 10 9 39 39 H 1.09007 * 109.47388 * 296.04605 * 14 2 1 40 40 H 1.09000 * 109.47294 * 300.00169 * 15 14 2 41 41 H 1.09002 * 109.47337 * 60.00303 * 15 14 2 42 42 H 1.09000 * 109.47240 * 300.00379 * 16 15 14 43 43 H 1.08999 * 109.47522 * 179.97438 * 16 15 14 44 44 H 1.08997 * 109.47304 * 180.02562 * 17 16 15 45 45 H 0.97001 * 120.00174 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.47294 * 299.99681 * 26 17 16 47 47 H 1.09002 * 109.47337 * 179.97438 * 26 17 16 48 48 H 1.08997 * 109.47109 * 180.02562 * 27 26 17 49 49 H 1.09000 * 109.47240 * 59.99621 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 -1.3182 5 1 1.9282 1.4439 -2.1688 6 6 2.2777 3.4606 -1.4026 7 6 1.2039 4.2580 -2.1173 8 6 1.2283 5.4795 -2.7535 9 6 0.0779 5.9768 -3.3395 10 6 -1.0931 5.2434 -3.2839 11 6 -1.1205 4.0215 -2.6448 12 6 0.0325 3.5151 -2.0495 13 8 0.2246 2.3519 -1.3688 14 6 1.9955 -0.7660 1.1376 15 6 3.5217 -0.8263 1.0492 16 6 4.0701 -1.6235 2.2343 17 6 3.5008 -3.0433 2.2011 18 6 3.9032 -3.7159 0.9139 19 1 3.1461 -4.0653 0.2276 20 6 5.2379 -3.8851 0.6125 21 7 6.1599 -3.4600 1.4485 22 14 5.7368 -4.7194 -0.9826 23 1 5.2044 -3.9461 -2.1332 24 1 7.2181 -4.7773 -1.0688 25 1 5.1843 -6.0974 -1.0144 26 6 1.9745 -2.9830 2.2895 27 6 1.4261 -2.1857 1.1043 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 3.0797 1.3444 0.1082 32 1 1.5611 1.9274 0.8309 33 1 3.1965 3.4318 -1.9884 34 1 2.4649 3.8637 -0.4074 35 1 2.1450 6.0491 -2.7942 36 1 0.0944 6.9345 -3.8385 37 1 -1.9911 5.6297 -3.7430 38 1 -2.0392 3.4549 -2.6064 39 1 1.7044 -0.2799 2.0688 40 1 3.8128 -1.3124 0.1180 41 1 3.9274 0.1851 1.0733 42 1 3.7790 -1.1371 3.1653 43 1 5.1574 -1.6670 2.1711 44 1 3.8911 -3.6112 3.0456 45 1 7.0989 -3.5787 1.2363 46 1 1.6834 -2.4965 3.2205 47 1 1.5689 -3.9944 2.2654 48 1 0.3389 -2.1424 1.1676 49 1 1.7172 -2.6722 0.1734 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173338034.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:28 Heat of formation + Delta-G solvation = -23.436760 kcal Electronic energy + Delta-G solvation = -26862.897797 eV Core-core repulsion = 23368.106356 eV Total energy + Delta-G solvation = -3494.791441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.14670 -40.19215 -38.47857 -36.99384 -34.23667 -33.71039 -31.68737 -31.35900 -30.92192 -29.83159 -27.68412 -26.86363 -25.11714 -23.32917 -23.08905 -22.58619 -22.29369 -21.39563 -20.43988 -18.44881 -17.87217 -17.69103 -17.16725 -16.93455 -16.52389 -16.14697 -15.65210 -15.32758 -15.09016 -14.88527 -14.75924 -14.46425 -14.24741 -14.01784 -13.92961 -13.79863 -13.34708 -13.21833 -13.19057 -12.96336 -12.79854 -12.73143 -12.46588 -12.39230 -12.24664 -12.04188 -11.93269 -11.83751 -11.71475 -11.58583 -11.42321 -10.93305 -10.65265 -10.39379 -10.25876 -9.82285 -9.22913 -9.07379 -7.99460 -6.08474 0.36252 0.44572 1.43939 1.44868 1.51464 2.26605 2.48988 2.76790 2.88962 3.28900 3.45345 3.68644 3.91278 3.99548 4.01738 4.10237 4.11108 4.23477 4.35137 4.44998 4.46895 4.49330 4.55315 4.64826 4.66988 4.69587 4.74925 4.82058 4.86811 4.91042 4.93381 4.94087 5.00665 5.03420 5.11326 5.18431 5.24953 5.42094 5.44777 5.51923 5.57294 5.57621 5.67421 5.71775 5.75465 5.77320 6.00330 6.16621 6.21843 6.28166 6.31233 6.50226 7.00084 7.56833 9.05263 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.020205 B = 0.002979 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.477026 B = 9396.827794 C = 9901.597904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.059 3.941 4 C 0.090 3.910 5 H 0.086 0.914 6 C -0.100 4.100 7 C -0.188 4.188 8 C -0.079 4.079 9 C -0.152 4.152 10 C -0.088 4.088 11 C -0.157 4.157 12 C 0.075 3.925 13 O -0.312 6.312 14 C 0.103 3.897 15 C -0.082 4.082 16 C -0.102 4.102 17 C 0.038 3.962 18 C -0.502 4.502 19 H 0.051 0.949 20 C 0.015 3.985 21 N -0.919 5.919 22 Si 0.939 3.061 23 H -0.274 1.274 24 H -0.288 1.288 25 H -0.276 1.276 26 C -0.101 4.101 27 C -0.092 4.092 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.020 0.980 31 H 0.102 0.898 32 H 0.041 0.959 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.143 0.857 36 H 0.154 0.846 37 H 0.156 0.844 38 H 0.131 0.869 39 H 0.030 0.970 40 H 0.050 0.950 41 H 0.049 0.951 42 H 0.024 0.976 43 H 0.061 0.939 44 H -0.011 1.011 45 H 0.257 0.743 46 H 0.047 0.953 47 H 0.047 0.953 48 H 0.063 0.937 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.222 19.523 -7.861 24.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.269 5.269 3 C -0.069 4.069 4 C 0.034 3.966 5 H 0.104 0.896 6 C -0.137 4.137 7 C -0.189 4.189 8 C -0.097 4.097 9 C -0.170 4.170 10 C -0.105 4.105 11 C -0.175 4.175 12 C 0.030 3.970 13 O -0.227 6.227 14 C -0.004 4.004 15 C -0.120 4.120 16 C -0.141 4.141 17 C 0.019 3.981 18 C -0.540 4.540 19 H 0.069 0.931 20 C -0.182 4.182 21 N -0.560 5.560 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.214 1.214 25 H -0.201 1.201 26 C -0.139 4.139 27 C -0.130 4.130 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.038 0.962 31 H 0.120 0.880 32 H 0.059 0.941 33 H 0.125 0.875 34 H 0.115 0.885 35 H 0.161 0.839 36 H 0.172 0.828 37 H 0.174 0.826 38 H 0.149 0.851 39 H 0.048 0.952 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.043 0.957 43 H 0.079 0.921 44 H 0.007 0.993 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.081 0.919 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.031 19.124 -8.163 24.023 hybrid contribution 0.536 -0.525 0.219 0.781 sum -11.496 18.599 -7.944 23.263 Atomic orbital electron populations 1.22523 0.86791 1.01774 1.01007 1.61997 1.08510 1.12650 1.43785 1.22323 1.01496 0.88307 0.94732 1.23412 0.77937 0.96145 0.99084 0.89568 1.21799 0.98155 0.91873 1.01894 1.21036 0.95645 0.97822 1.04379 1.20669 0.99943 0.93389 0.95670 1.21423 0.92174 1.01548 1.01851 1.21237 0.99616 0.92661 0.97035 1.20573 0.96785 0.98648 1.01524 1.20075 0.96132 0.87033 0.93740 1.86924 1.27576 1.38001 1.70216 1.21465 0.95130 0.93740 0.90084 1.21299 0.93392 0.97831 0.99435 1.21373 1.01754 0.96176 0.94799 1.18695 0.91328 0.93108 0.94939 1.21335 0.91378 1.36450 1.04838 0.93127 1.25569 0.97008 0.96527 0.99118 1.69994 1.00302 1.48314 1.37360 0.85904 0.76769 0.79307 0.81429 1.19888 1.21372 1.20127 1.21469 0.96983 0.98588 0.96909 1.21421 0.98286 0.94183 0.99067 0.90111 0.91242 0.96182 0.88024 0.94076 0.87471 0.88505 0.83901 0.82823 0.82599 0.85076 0.95163 0.93161 0.93200 0.95697 0.92087 0.99326 0.93417 0.93387 0.93410 0.91894 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 8.65 127.69 1.10 1.87 16 2 N -0.55 -17.36 4.63 -897.03 -4.15 -21.51 16 3 C 0.06 1.62 4.57 86.30 0.39 2.01 16 4 C 0.09 2.25 3.63 31.18 0.11 2.36 16 5 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 6 C -0.10 -2.01 6.64 30.73 0.20 -1.80 16 7 C -0.19 -4.03 6.27 -19.52 -0.12 -4.15 16 8 C -0.08 -1.33 10.03 22.18 0.22 -1.11 16 9 C -0.15 -2.17 10.07 22.31 0.22 -1.94 16 10 C -0.09 -1.33 10.02 22.21 0.22 -1.11 16 11 C -0.16 -3.18 10.06 22.45 0.23 -2.95 16 12 C 0.08 1.83 7.04 22.68 0.16 1.99 16 13 O -0.31 -8.46 7.96 -95.03 -0.76 -9.21 16 14 C 0.10 3.69 1.94 44.92 0.09 3.78 16 15 C -0.08 -3.34 4.78 30.60 0.15 -3.20 16 16 C -0.10 -4.78 5.24 30.60 0.16 -4.62 16 17 C 0.04 1.87 2.59 -11.54 -0.03 1.84 16 18 C -0.50 -27.02 6.61 25.60 0.17 -26.85 16 19 H 0.05 2.72 6.71 -2.91 -0.02 2.70 16 20 C 0.02 0.85 5.30 84.65 0.45 1.30 16 21 N -0.92 -52.89 11.32 21.45 0.24 -52.65 16 22 Si 0.94 44.00 29.54 68.60 2.03 46.02 16 23 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 26 C -0.10 -4.16 5.41 30.60 0.17 -3.99 16 27 C -0.09 -3.44 4.63 30.60 0.14 -3.30 16 28 H 0.08 2.31 5.50 -2.39 -0.01 2.29 16 29 H 0.07 1.96 6.01 -2.38 -0.01 1.95 16 30 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.10 2.74 5.83 -2.39 -0.01 2.73 16 32 H 0.04 1.11 8.12 -2.39 -0.02 1.09 16 33 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.10 1.80 7.92 -2.39 -0.02 1.78 16 35 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 36 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 37 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 39 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.05 2.36 7.22 -2.39 -0.02 2.34 16 41 H 0.05 1.82 6.20 -2.39 -0.01 1.80 16 42 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 44 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 45 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 46 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.06 2.04 6.26 -2.39 -0.01 2.03 16 49 H 0.06 2.36 6.62 -2.39 -0.02 2.35 16 Total: -1.00 -61.88 366.38 2.32 -59.56 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.92 Total: 17.66 kcal Atomic # 6 Polarization: -43.91 SS G_CDS: 4.04 Total: -39.87 kcal Atomic # 7 Polarization: -70.25 SS G_CDS: -3.91 Total: -74.16 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.76 Total: -9.21 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -61.88 2.32 -59.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338034.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.126 kcal (2) G-P(sol) polarization free energy of solvation -61.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds