Wall clock time and date at job start Tue Mar 31 2020 11:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 110.99994 * 2 1 4 4 C 1.53006 * 109.46626 * 293.95302 * 3 2 1 5 5 C 1.50699 * 109.46866 * 179.97438 * 4 3 2 6 6 O 1.21254 * 120.00163 * 359.97438 * 5 4 3 7 7 C 1.47168 * 120.00090 * 179.97438 * 5 4 3 8 8 C 1.39850 * 120.16989 * 359.72764 * 7 5 4 9 9 C 1.37885 * 119.82291 * 179.70140 * 8 7 5 10 10 C 1.38404 * 120.17201 * 0.57060 * 9 8 7 11 11 C 1.38400 * 120.34939 * 359.72492 * 10 9 8 12 12 C 1.37884 * 120.17231 * 359.97438 * 11 10 9 13 13 C 1.46901 * 111.00062 * 123.94970 * 2 1 3 14 14 C 1.52998 * 109.47210 * 176.04966 * 13 2 1 15 15 C 1.52998 * 109.47316 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47209 * 59.99827 * 15 14 13 17 17 C 1.50700 * 109.47126 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99668 * 119.99923 * 17 16 15 19 19 C 1.37872 * 120.00244 * 300.00203 * 17 16 15 20 20 N 1.31515 * 119.99847 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00211 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47283 * 89.99636 * 21 19 17 23 23 H 1.48496 * 109.47182 * 209.99845 * 21 19 17 24 24 H 1.48501 * 109.46563 * 329.99845 * 21 19 17 25 25 C 1.52998 * 109.47123 * 300.00291 * 16 15 14 26 26 C 1.52997 * 109.47349 * 56.04825 * 13 2 1 27 27 H 1.08992 * 109.47140 * 60.00797 * 1 2 3 28 28 H 1.09002 * 109.46408 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47025 * 299.99832 * 1 2 3 30 30 H 1.08993 * 109.47737 * 173.95434 * 3 2 1 31 31 H 1.09000 * 109.47263 * 53.94996 * 3 2 1 32 32 H 1.09000 * 109.47050 * 299.99824 * 4 3 2 33 33 H 1.09001 * 109.46801 * 59.99937 * 4 3 2 34 34 H 1.08007 * 120.08696 * 359.97438 * 8 7 5 35 35 H 1.08008 * 119.91414 * 180.31507 * 9 8 7 36 36 H 1.08001 * 119.82416 * 179.69622 * 10 9 8 37 37 H 1.07999 * 119.91548 * 179.97438 * 11 10 9 38 38 H 1.07999 * 120.08800 * 180.02562 * 12 11 10 39 39 H 1.08997 * 109.47092 * 296.04997 * 13 2 1 40 40 H 1.08997 * 109.47119 * 300.00014 * 14 13 2 41 41 H 1.09003 * 109.47205 * 59.99714 * 14 13 2 42 42 H 1.08997 * 109.47007 * 300.00044 * 15 14 13 43 43 H 1.09002 * 109.47429 * 179.97438 * 15 14 13 44 44 H 1.09002 * 109.46694 * 59.99781 * 16 15 14 45 45 H 0.97004 * 120.00182 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.46788 * 300.00127 * 25 16 15 47 47 H 1.08990 * 109.47319 * 179.97438 * 25 16 15 48 48 H 1.09002 * 109.46949 * 300.00279 * 26 13 2 49 49 H 1.09007 * 109.47052 * 59.99498 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 -1.3184 5 6 2.1709 3.4645 -1.3182 6 8 2.7854 3.8781 -0.3582 7 6 1.9519 4.3367 -2.4831 8 6 1.2485 3.8615 -3.5946 9 6 1.0422 4.6869 -4.6796 10 6 1.5392 5.9786 -4.6756 11 6 2.2416 6.4542 -3.5820 12 6 2.4510 5.6432 -2.4868 13 6 1.9955 -0.7659 1.1376 14 6 3.5217 -0.8262 1.0493 15 6 4.0700 -1.6245 2.2338 16 6 3.5006 -3.0442 2.1994 17 6 4.0412 -3.8306 3.3658 18 1 3.3639 -4.2458 4.0974 19 6 5.4003 -4.0200 3.4990 20 7 6.2251 -3.5147 2.6078 21 14 6.0704 -4.9954 4.9444 22 1 6.1576 -6.4310 4.5749 23 1 7.4221 -4.4920 5.2972 24 1 5.1638 -4.8384 6.1101 25 6 1.9744 -2.9839 2.2878 26 6 1.4262 -2.1856 1.1039 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.0797 1.3445 0.1082 31 1 1.5611 1.9274 0.8309 32 1 2.0658 1.5014 -2.1492 33 1 0.5471 2.0843 -1.4265 34 1 0.8642 2.8522 -3.6011 35 1 0.4947 4.3231 -5.5367 36 1 1.3785 6.6186 -5.5306 37 1 2.6267 7.4632 -3.5865 38 1 2.9989 6.0158 -1.6339 39 1 1.7044 -0.2798 2.0688 40 1 3.8128 -1.3123 0.1182 41 1 3.9273 0.1852 1.0733 42 1 3.7789 -1.1387 3.1652 43 1 5.1573 -1.6678 2.1707 44 1 3.7917 -3.5299 1.2680 45 1 7.1813 -3.6482 2.7013 46 1 1.6833 -2.4981 3.2191 47 1 1.5688 -3.9952 2.2628 48 1 0.3388 -2.1426 1.1668 49 1 1.7172 -2.6718 0.1727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173339120.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:18 Heat of formation + Delta-G solvation = -24.265266 kcal Electronic energy + Delta-G solvation = -25813.019828 eV Core-core repulsion = 22318.192460 eV Total energy + Delta-G solvation = -3494.827368 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -40.33920 -38.86794 -38.25889 -35.73882 -32.80015 -32.08661 -31.34024 -30.68158 -29.98133 -28.43270 -26.35069 -24.91444 -23.78489 -22.87163 -21.88481 -21.21739 -19.91457 -19.72179 -18.68422 -17.64542 -16.44106 -16.16150 -15.89214 -15.76095 -15.06098 -14.86622 -14.52732 -14.41219 -14.09127 -13.90874 -13.81483 -13.49797 -13.10752 -12.96930 -12.70331 -12.56772 -12.31755 -12.05710 -12.03471 -11.60020 -11.42929 -11.41895 -11.13239 -10.93116 -10.61521 -10.55190 -10.44768 -10.32761 -10.10408 -9.84130 -9.71474 -9.38366 -9.33444 -9.27597 -8.79577 -8.56607 -8.23256 -8.06635 -5.91269 -3.97227 0.35601 0.99070 2.18674 3.34221 3.40989 3.44179 3.46540 3.62572 4.28900 4.44234 4.49521 4.55166 4.66883 4.82181 4.96185 5.01840 5.04266 5.23311 5.33604 5.37533 5.44811 5.47960 5.54585 5.57933 5.60619 5.68750 5.92211 5.94852 5.95723 5.98671 6.04509 6.07868 6.09297 6.22507 6.38528 6.49413 6.49889 6.50951 6.61203 6.77147 6.83650 7.01996 7.19571 7.28288 7.33903 7.38723 7.45869 7.62194 7.82591 8.10627 8.24030 8.54976 9.07060 9.66995 11.14213 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.025168 B = 0.002302 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.239143 B =12158.828316 C =12838.015652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.540 5.540 3 C 0.059 3.941 4 C -0.161 4.161 5 C 0.395 3.605 6 O -0.448 6.448 7 C -0.167 4.167 8 C -0.072 4.072 9 C -0.134 4.134 10 C -0.092 4.092 11 C -0.134 4.134 12 C -0.064 4.064 13 C 0.091 3.909 14 C -0.109 4.109 15 C -0.108 4.108 16 C 0.049 3.951 17 C -0.512 4.512 18 H 0.053 0.947 19 C 0.060 3.940 20 N -0.890 5.890 21 Si 0.888 3.112 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.108 4.108 26 C -0.108 4.108 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.020 0.980 30 H 0.089 0.911 31 H 0.035 0.965 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.133 0.867 39 H 0.034 0.966 40 H 0.060 0.940 41 H 0.043 0.957 42 H 0.030 0.970 43 H 0.093 0.907 44 H 0.026 0.974 45 H 0.259 0.741 46 H 0.044 0.956 47 H 0.048 0.952 48 H 0.045 0.955 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.275 17.535 -15.205 26.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.264 5.264 3 C -0.069 4.069 4 C -0.199 4.199 5 C 0.272 3.728 6 O -0.323 6.323 7 C -0.168 4.168 8 C -0.090 4.090 9 C -0.152 4.152 10 C -0.110 4.110 11 C -0.152 4.152 12 C -0.082 4.082 13 C -0.016 4.016 14 C -0.147 4.147 15 C -0.146 4.146 16 C 0.031 3.969 17 C -0.550 4.550 18 H 0.071 0.929 19 C -0.141 4.141 20 N -0.529 5.529 21 Si 0.716 3.284 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.201 1.201 25 C -0.146 4.146 26 C -0.145 4.145 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.039 0.961 30 H 0.107 0.893 31 H 0.054 0.946 32 H 0.127 0.873 33 H 0.115 0.885 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.049 0.951 43 H 0.111 0.889 44 H 0.044 0.956 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.067 0.933 48 H 0.064 0.936 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.600 17.524 -15.150 25.907 hybrid contribution 0.063 -0.038 1.368 1.370 sum -11.537 17.486 -13.781 25.076 Atomic orbital electron populations 1.22485 0.88574 1.02312 0.99745 1.62079 1.06943 1.12429 1.44903 1.21945 1.02001 0.88292 0.94650 1.22032 1.02824 0.93482 1.01540 1.22565 0.76300 0.89078 0.84845 1.90543 1.31470 1.75811 1.34494 1.20620 1.03289 0.95961 0.96886 1.21532 0.95418 0.99930 0.92131 1.21178 1.01001 0.94252 0.98780 1.21440 0.95776 0.95797 0.98010 1.21175 1.00025 1.00255 0.93764 1.21482 0.95936 0.92529 0.98225 1.21706 0.96574 0.93662 0.89675 1.21735 0.92269 0.99398 1.01317 1.21610 1.03586 0.96026 0.93427 1.18652 0.88446 0.92751 0.97095 1.21245 0.91680 1.32707 1.09382 0.92898 1.24969 0.97191 0.95795 0.96109 1.69880 1.02819 1.45246 1.34971 0.86663 0.78278 0.80308 0.83138 1.20796 1.21320 1.20052 1.21612 0.99691 0.97712 0.95566 1.21650 0.97985 0.94479 1.00421 0.92014 0.90767 0.96126 0.89309 0.94647 0.87344 0.88504 0.84774 0.85335 0.85637 0.85439 0.84895 0.94840 0.92075 0.93862 0.95086 0.88891 0.95627 0.93135 0.93685 0.93347 0.93636 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 8.95 60.07 0.54 0.75 16 2 N -0.54 -7.95 4.63 -234.89 -1.09 -9.03 16 3 C 0.06 0.82 4.06 -3.82 -0.02 0.81 16 4 C -0.16 -1.69 4.24 -27.88 -0.12 -1.81 16 5 C 0.40 4.62 7.12 -30.69 -0.22 4.40 16 6 O -0.45 -6.75 15.98 5.58 0.09 -6.66 16 7 C -0.17 -1.64 5.87 -105.06 -0.62 -2.26 16 8 C -0.07 -0.55 9.47 -39.11 -0.37 -0.92 16 9 C -0.13 -0.87 10.03 -39.65 -0.40 -1.27 16 10 C -0.09 -0.59 10.04 -39.46 -0.40 -0.98 16 11 C -0.13 -0.98 10.03 -39.65 -0.40 -1.38 16 12 C -0.06 -0.60 9.60 -39.11 -0.38 -0.97 16 13 C 0.09 1.60 1.95 -67.71 -0.13 1.47 16 14 C -0.11 -2.19 5.00 -26.73 -0.13 -2.32 16 15 C -0.11 -2.59 4.98 -26.73 -0.13 -2.72 16 16 C 0.05 1.23 2.10 -91.77 -0.19 1.03 16 17 C -0.51 -14.23 8.56 -34.44 -0.29 -14.52 16 18 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 20 N -0.89 -25.75 11.32 55.43 0.63 -25.12 16 21 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C -0.11 -2.26 5.14 -26.76 -0.14 -2.40 16 26 C -0.11 -1.91 4.85 -26.76 -0.13 -2.04 16 27 H 0.06 0.60 6.47 -51.93 -0.34 0.27 16 28 H 0.07 0.90 6.01 -51.93 -0.31 0.59 16 29 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 1.40 5.79 -51.93 -0.30 1.10 16 31 H 0.04 0.52 8.08 -51.93 -0.42 0.10 16 32 H 0.11 1.04 8.08 -51.93 -0.42 0.62 16 33 H 0.10 0.82 6.51 -51.93 -0.34 0.49 16 34 H 0.13 0.77 7.05 -52.48 -0.37 0.40 16 35 H 0.13 0.55 8.06 -52.48 -0.42 0.12 16 36 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 37 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 38 H 0.13 1.27 7.65 -52.49 -0.40 0.87 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.04 0.83 6.20 -51.93 -0.32 0.50 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.05 0.71 6.26 -51.93 -0.32 0.38 16 49 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 379.59 15.07 5.72 5.72 Total: -1.00 -30.76 379.59 -11.34 -42.10 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -8.05 Total: -0.03 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: -3.62 Total: -23.55 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: -0.46 Total: -34.15 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: 0.09 Total: -6.66 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.76 -11.34 -42.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173339120.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.831 kcal (2) G-P(sol) polarization free energy of solvation -30.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds