Wall clock time and date at job start Tue Mar 31 2020 11:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 110.99994 * 2 1 4 4 C 1.53006 * 109.46626 * 293.95302 * 3 2 1 5 5 C 1.50699 * 109.46866 * 179.97438 * 4 3 2 6 6 O 1.21254 * 120.00163 * 359.97438 * 5 4 3 7 7 C 1.47168 * 120.00090 * 179.97438 * 5 4 3 8 8 C 1.39850 * 120.16989 * 359.72764 * 7 5 4 9 9 C 1.37885 * 119.82291 * 179.70140 * 8 7 5 10 10 C 1.38404 * 120.17201 * 0.57060 * 9 8 7 11 11 C 1.38400 * 120.34939 * 359.72492 * 10 9 8 12 12 C 1.37884 * 120.17231 * 359.97438 * 11 10 9 13 13 C 1.46901 * 111.00062 * 123.94970 * 2 1 3 14 14 C 1.52998 * 109.47210 * 176.04966 * 13 2 1 15 15 C 1.52998 * 109.47316 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47209 * 59.99827 * 15 14 13 17 17 C 1.50700 * 109.47126 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99668 * 119.99923 * 17 16 15 19 19 C 1.37872 * 120.00244 * 300.00203 * 17 16 15 20 20 N 1.31515 * 119.99847 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00211 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47283 * 89.99636 * 21 19 17 23 23 H 1.48496 * 109.47182 * 209.99845 * 21 19 17 24 24 H 1.48501 * 109.46563 * 329.99845 * 21 19 17 25 25 C 1.52998 * 109.47123 * 300.00291 * 16 15 14 26 26 C 1.52997 * 109.47349 * 56.04825 * 13 2 1 27 27 H 1.08992 * 109.47140 * 60.00797 * 1 2 3 28 28 H 1.09002 * 109.46408 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47025 * 299.99832 * 1 2 3 30 30 H 1.08993 * 109.47737 * 173.95434 * 3 2 1 31 31 H 1.09000 * 109.47263 * 53.94996 * 3 2 1 32 32 H 1.09000 * 109.47050 * 299.99824 * 4 3 2 33 33 H 1.09001 * 109.46801 * 59.99937 * 4 3 2 34 34 H 1.08007 * 120.08696 * 359.97438 * 8 7 5 35 35 H 1.08008 * 119.91414 * 180.31507 * 9 8 7 36 36 H 1.08001 * 119.82416 * 179.69622 * 10 9 8 37 37 H 1.07999 * 119.91548 * 179.97438 * 11 10 9 38 38 H 1.07999 * 120.08800 * 180.02562 * 12 11 10 39 39 H 1.08997 * 109.47092 * 296.04997 * 13 2 1 40 40 H 1.08997 * 109.47119 * 300.00014 * 14 13 2 41 41 H 1.09003 * 109.47205 * 59.99714 * 14 13 2 42 42 H 1.08997 * 109.47007 * 300.00044 * 15 14 13 43 43 H 1.09002 * 109.47429 * 179.97438 * 15 14 13 44 44 H 1.09002 * 109.46694 * 59.99781 * 16 15 14 45 45 H 0.97004 * 120.00182 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.46788 * 300.00127 * 25 16 15 47 47 H 1.08990 * 109.47319 * 179.97438 * 25 16 15 48 48 H 1.09002 * 109.46949 * 300.00279 * 26 13 2 49 49 H 1.09007 * 109.47052 * 59.99498 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 -1.3184 5 6 2.1709 3.4645 -1.3182 6 8 2.7854 3.8781 -0.3582 7 6 1.9519 4.3367 -2.4831 8 6 1.2485 3.8615 -3.5946 9 6 1.0422 4.6869 -4.6796 10 6 1.5392 5.9786 -4.6756 11 6 2.2416 6.4542 -3.5820 12 6 2.4510 5.6432 -2.4868 13 6 1.9955 -0.7659 1.1376 14 6 3.5217 -0.8262 1.0493 15 6 4.0700 -1.6245 2.2338 16 6 3.5006 -3.0442 2.1994 17 6 4.0412 -3.8306 3.3658 18 1 3.3639 -4.2458 4.0974 19 6 5.4003 -4.0200 3.4990 20 7 6.2251 -3.5147 2.6078 21 14 6.0704 -4.9954 4.9444 22 1 6.1576 -6.4310 4.5749 23 1 7.4221 -4.4920 5.2972 24 1 5.1638 -4.8384 6.1101 25 6 1.9744 -2.9839 2.2878 26 6 1.4262 -2.1856 1.1039 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.0797 1.3445 0.1082 31 1 1.5611 1.9274 0.8309 32 1 2.0658 1.5014 -2.1492 33 1 0.5471 2.0843 -1.4265 34 1 0.8642 2.8522 -3.6011 35 1 0.4947 4.3231 -5.5367 36 1 1.3785 6.6186 -5.5306 37 1 2.6267 7.4632 -3.5865 38 1 2.9989 6.0158 -1.6339 39 1 1.7044 -0.2798 2.0688 40 1 3.8128 -1.3123 0.1182 41 1 3.9273 0.1852 1.0733 42 1 3.7789 -1.1387 3.1652 43 1 5.1573 -1.6678 2.1707 44 1 3.7917 -3.5299 1.2680 45 1 7.1813 -3.6482 2.7013 46 1 1.6833 -2.4981 3.2191 47 1 1.5688 -3.9952 2.2628 48 1 0.3388 -2.1426 1.1668 49 1 1.7172 -2.6718 0.1727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173339120.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:18 Heat of formation + Delta-G solvation = -40.404168 kcal Electronic energy + Delta-G solvation = -25813.719663 eV Core-core repulsion = 22318.192460 eV Total energy + Delta-G solvation = -3495.527203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.17140 -40.14683 -39.12054 -37.26752 -34.56558 -33.12202 -31.94683 -31.77929 -31.54472 -29.99823 -27.52438 -26.49331 -24.88472 -23.60864 -23.14162 -22.65940 -21.38028 -20.60074 -20.37707 -18.43263 -18.33789 -17.25955 -16.74892 -16.67243 -16.53505 -15.99989 -15.70597 -15.63157 -15.05457 -15.01339 -14.75530 -14.58813 -14.48557 -14.37782 -14.17324 -13.76440 -13.42317 -13.33050 -13.13994 -12.93825 -12.78487 -12.61428 -12.58740 -12.31997 -12.15912 -12.00190 -11.97919 -11.82445 -11.68998 -11.61278 -11.18773 -10.77366 -10.68717 -10.42868 -10.35500 -9.93834 -9.92966 -9.27070 -8.06404 -6.20542 -0.31470 0.44275 1.39986 1.40689 1.43464 1.50840 2.43510 2.67003 2.87481 3.19312 3.27877 3.80650 3.87801 3.95177 4.00304 4.06028 4.12551 4.21331 4.33863 4.42844 4.45000 4.50374 4.55014 4.58002 4.64307 4.68489 4.75358 4.79403 4.85699 4.88694 4.92474 4.98307 4.99463 5.05391 5.09339 5.13536 5.23140 5.35652 5.38666 5.42068 5.48052 5.49113 5.52182 5.62500 5.70443 5.97538 6.04613 6.11639 6.14349 6.26536 6.42697 6.50973 6.92638 7.47260 8.97460 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.025168 B = 0.002302 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.239143 B =12158.828316 C =12838.015652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.538 5.538 3 C 0.061 3.939 4 C -0.151 4.151 5 C 0.397 3.603 6 O -0.498 6.498 7 C -0.191 4.191 8 C -0.070 4.070 9 C -0.135 4.135 10 C -0.087 4.087 11 C -0.140 4.140 12 C -0.086 4.086 13 C 0.099 3.901 14 C -0.098 4.098 15 C -0.100 4.100 16 C 0.046 3.954 17 C -0.534 4.534 18 H 0.051 0.949 19 C 0.009 3.991 20 N -0.917 5.917 21 Si 0.952 3.048 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.269 1.269 25 C -0.102 4.102 26 C -0.097 4.097 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.020 0.980 30 H 0.061 0.939 31 H 0.023 0.977 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.145 0.855 38 H 0.117 0.883 39 H 0.025 0.975 40 H 0.051 0.949 41 H 0.046 0.954 42 H 0.020 0.980 43 H 0.057 0.943 44 H -0.006 1.006 45 H 0.259 0.741 46 H 0.043 0.957 47 H 0.051 0.949 48 H 0.078 0.922 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.831 17.960 -17.268 28.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.262 5.262 3 C -0.067 4.067 4 C -0.188 4.188 5 C 0.278 3.722 6 O -0.376 6.376 7 C -0.192 4.192 8 C -0.088 4.088 9 C -0.153 4.153 10 C -0.105 4.105 11 C -0.158 4.158 12 C -0.104 4.104 13 C -0.009 4.009 14 C -0.136 4.136 15 C -0.139 4.139 16 C 0.028 3.972 17 C -0.572 4.572 18 H 0.069 0.931 19 C -0.189 4.189 20 N -0.557 5.557 21 Si 0.778 3.222 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.140 4.140 26 C -0.135 4.135 27 H 0.112 0.888 28 H 0.097 0.903 29 H 0.039 0.961 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.174 0.826 35 H 0.176 0.824 36 H 0.172 0.828 37 H 0.162 0.838 38 H 0.135 0.865 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.039 0.961 43 H 0.076 0.924 44 H 0.013 0.987 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.070 0.930 48 H 0.097 0.903 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.183 17.947 -17.231 28.639 hybrid contribution 0.856 -0.117 1.933 2.117 sum -13.327 17.830 -15.298 27.010 Atomic orbital electron populations 1.22634 0.86239 1.03179 1.01352 1.62045 1.08930 1.12378 1.42872 1.21882 1.00295 0.88083 0.96465 1.21996 1.04627 0.92392 0.99752 1.22965 0.74870 0.89687 0.84721 1.90531 1.33955 1.76776 1.36378 1.20566 1.05397 0.95991 0.97221 1.21803 0.94464 1.01096 0.91439 1.21586 1.00487 0.94055 0.99150 1.21856 0.94195 0.96259 0.98203 1.21423 1.00118 1.00854 0.93427 1.21548 0.96810 0.93224 0.98824 1.21462 0.94467 0.94314 0.90675 1.21542 0.94654 0.98609 0.98818 1.21400 1.01488 0.96301 0.94696 1.18623 0.91490 0.92462 0.94672 1.21647 0.92156 1.33209 1.10209 0.93067 1.25769 0.97584 0.96828 0.98713 1.70032 1.02947 1.46162 1.36563 0.85649 0.77551 0.79004 0.80019 1.20015 1.21047 1.19373 1.21485 0.96632 0.98705 0.97148 1.21542 0.99773 0.93638 0.98527 0.88835 0.90259 0.96094 0.92024 0.95829 0.85823 0.85511 0.82638 0.82429 0.82759 0.83752 0.86532 0.95723 0.92999 0.93517 0.96078 0.92413 0.98741 0.93180 0.93822 0.92975 0.90314 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 8.95 127.69 1.14 1.42 16 2 N -0.54 -14.93 4.63 -897.05 -4.15 -19.09 16 3 C 0.06 1.67 4.06 86.31 0.35 2.02 16 4 C -0.15 -2.89 4.24 29.85 0.13 -2.76 16 5 C 0.40 9.30 7.12 28.03 0.20 9.50 16 6 O -0.50 -15.90 15.98 -2.95 -0.05 -15.95 16 7 C -0.19 -3.62 5.87 -20.15 -0.12 -3.73 16 8 C -0.07 -0.87 9.47 22.58 0.21 -0.66 16 9 C -0.14 -1.26 10.03 22.23 0.22 -1.04 16 10 C -0.09 -0.84 10.04 22.35 0.22 -0.61 16 11 C -0.14 -1.86 10.03 22.22 0.22 -1.64 16 12 C -0.09 -1.63 9.60 22.58 0.22 -1.42 16 13 C 0.10 3.43 1.95 44.91 0.09 3.52 16 14 C -0.10 -4.07 5.00 30.59 0.15 -3.91 16 15 C -0.10 -5.03 4.98 30.60 0.15 -4.87 16 16 C 0.05 2.38 2.10 -11.54 -0.02 2.35 16 17 C -0.53 -30.43 8.56 25.60 0.22 -30.21 16 18 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 19 C 0.01 0.53 5.30 84.65 0.45 0.98 16 20 N -0.92 -54.89 11.32 21.45 0.24 -54.65 16 21 Si 0.95 44.98 29.54 68.60 2.03 47.01 16 22 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 23 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 24 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 25 C -0.10 -4.25 5.14 30.58 0.16 -4.10 16 26 C -0.10 -3.32 4.85 30.58 0.15 -3.17 16 27 H 0.09 1.38 6.47 -2.39 -0.02 1.36 16 28 H 0.08 1.60 6.01 -2.39 -0.01 1.58 16 29 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 2.02 5.79 -2.39 -0.01 2.01 16 31 H 0.02 0.70 8.08 -2.39 -0.02 0.68 16 32 H 0.12 2.05 8.08 -2.39 -0.02 2.03 16 33 H 0.13 1.68 6.51 -2.39 -0.02 1.66 16 34 H 0.16 1.17 7.05 -2.91 -0.02 1.14 16 35 H 0.16 0.56 8.06 -2.91 -0.02 0.54 16 36 H 0.15 0.57 8.06 -2.91 -0.02 0.55 16 37 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 38 H 0.12 2.47 7.65 -2.91 -0.02 2.45 16 39 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.05 1.87 6.20 -2.39 -0.01 1.86 16 42 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 44 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 45 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 46 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.08 2.20 6.26 -2.39 -0.01 2.19 16 49 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -70.53 379.59 3.13 -67.40 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.92 Total: 13.61 kcal Atomic # 6 Polarization: -42.48 SS G_CDS: 4.14 Total: -38.33 kcal Atomic # 7 Polarization: -69.82 SS G_CDS: -3.91 Total: -73.73 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.05 Total: -15.95 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -70.53 3.13 -67.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173339120.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.997 kcal (2) G-P(sol) polarization free energy of solvation -70.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds