Wall clock time and date at job start Tue Mar 31 2020 10:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47272 * 2 1 4 4 C 1.52999 * 109.46757 * 239.99891 * 2 1 3 5 5 C 1.53001 * 109.46757 * 179.97438 * 4 2 1 6 6 H 1.09001 * 109.46844 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47478 * 299.99652 * 5 4 2 8 8 C 1.34772 * 120.00038 * 192.25930 * 7 5 4 9 9 O 1.21542 * 120.00284 * 0.02562 * 8 7 5 10 10 C 1.47889 * 119.99559 * 180.02562 * 8 7 5 11 11 C 1.39925 * 120.02782 * 359.97438 * 10 8 7 12 12 C 1.38324 * 120.35950 * 179.97438 * 11 10 8 13 13 C 1.37757 * 120.41151 * 0.28547 * 12 11 10 14 14 C 1.40748 * 120.03949 * 359.44775 * 13 12 11 15 15 C 1.41438 * 120.17979 * 180.28267 * 14 13 12 16 16 H 1.08004 * 119.99828 * 28.70208 * 15 14 13 17 17 C 1.39934 * 119.99866 * 208.70671 * 15 14 13 18 18 N 1.30832 * 120.00274 * 12.87172 * 17 15 14 19 19 Si 1.86800 * 119.99823 * 192.86865 * 17 15 14 20 20 H 1.48499 * 109.47316 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47065 * 120.00475 * 19 17 15 22 22 H 1.48498 * 109.47127 * 239.99995 * 19 17 15 23 23 C 1.38992 * 120.02413 * 179.97438 * 10 8 7 24 24 C 1.53002 * 109.47369 * 60.00206 * 5 4 2 25 25 C 1.52997 * 109.46826 * 300.00287 * 24 5 4 26 26 C 1.53002 * 109.46826 * 179.97438 * 25 24 5 27 27 C 1.53006 * 109.46810 * 299.99222 * 25 24 5 28 28 C 1.52995 * 109.47774 * 59.99424 * 25 24 5 29 29 H 1.09001 * 109.46844 * 300.00056 * 1 2 3 30 30 H 1.08995 * 109.47446 * 59.99746 * 1 2 3 31 31 H 1.08998 * 109.47237 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46766 * 60.00443 * 4 2 1 33 33 H 1.09002 * 109.47319 * 300.00080 * 4 2 1 34 34 H 0.97010 * 119.99546 * 12.26876 * 7 5 4 35 35 H 1.08004 * 119.81784 * 0.02562 * 11 10 8 36 36 H 1.07999 * 119.79372 * 179.97438 * 12 11 10 37 37 H 1.07998 * 119.97779 * 179.72243 * 13 12 11 38 38 H 0.97004 * 120.00267 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.20557 * 0.03643 * 23 10 8 40 40 H 1.09002 * 109.47003 * 59.99738 * 24 5 4 41 41 H 1.08990 * 109.47250 * 179.97438 * 24 5 4 42 42 H 1.09005 * 109.47287 * 59.99730 * 26 25 24 43 43 H 1.09001 * 109.47013 * 179.97438 * 26 25 24 44 44 H 1.09002 * 109.47003 * 299.99452 * 26 25 24 45 45 H 1.09005 * 109.46819 * 76.96710 * 27 25 24 46 46 H 1.09002 * 109.47116 * 196.96724 * 27 25 24 47 47 H 1.08993 * 109.47378 * 316.97322 * 27 25 24 48 48 H 1.09002 * 109.46832 * 60.00072 * 28 25 24 49 49 H 1.09002 * 109.47446 * 179.97438 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5699 -0.7207 -1.2496 6 1 3.9332 -1.2342 -2.1398 7 7 4.0578 0.6606 -1.2500 8 6 5.3576 0.9161 -1.4982 9 8 6.1250 0.0006 -1.7221 10 6 5.8502 2.3106 -1.4980 11 6 4.9671 3.3651 -1.2408 12 6 5.4205 4.6719 -1.2384 13 6 6.7449 4.9509 -1.4949 14 6 7.6492 3.9030 -1.7502 15 6 9.0108 4.1858 -2.0079 16 1 9.4696 5.0658 -1.5819 17 6 9.7635 3.3253 -2.8149 18 7 9.1642 2.4092 -3.5314 19 14 11.6239 3.4847 -2.8693 20 1 12.0524 4.5896 -1.9745 21 1 12.2431 2.2132 -2.4166 22 1 12.0551 3.7777 -4.2598 23 6 7.1907 2.5747 -1.7533 24 6 4.0805 -1.4416 -0.0003 25 6 3.5705 -0.7204 1.2489 26 6 4.0805 -1.4417 2.4981 27 6 4.0801 0.7223 1.2486 28 6 2.0405 -0.7209 1.2492 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6766 -0.2074 -2.1392 33 1 1.6766 -1.7490 -1.2492 34 1 3.4453 1.3914 -1.0715 35 1 3.9260 3.1574 -1.0422 36 1 4.7309 5.4788 -1.0392 37 1 7.0905 5.9742 -1.4957 38 1 9.6859 1.8129 -4.0911 39 1 7.8758 1.7640 -1.9529 40 1 3.7175 -2.4694 -0.0001 41 1 5.1704 -1.4416 -0.0008 42 1 5.1706 -1.4417 2.4981 43 1 3.7175 -0.9276 3.3881 44 1 3.7172 -2.4693 2.4981 45 1 3.4926 1.3149 0.5472 46 1 3.9827 1.1422 2.2497 47 1 5.1278 0.7375 0.9484 48 1 1.6775 -1.7487 1.2495 49 1 1.6772 -0.2074 2.1395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188687585.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:30 Heat of formation + Delta-G solvation = -35.276938 kcal Electronic energy + Delta-G solvation = -27559.957021 eV Core-core repulsion = 24064.652151 eV Total energy + Delta-G solvation = -3495.304870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.69940 -38.38378 -36.85162 -34.25311 -33.86503 -33.58333 -31.02223 -29.50439 -29.26205 -27.10553 -26.58404 -26.35933 -25.28590 -23.07727 -21.48646 -20.89036 -20.29716 -19.61998 -18.27384 -17.78232 -16.30639 -15.67276 -15.21743 -15.16724 -14.75619 -14.55855 -14.35313 -13.95677 -13.86067 -13.40260 -13.18438 -12.94344 -12.86295 -12.60701 -12.52145 -12.44917 -12.11289 -11.90350 -11.75419 -11.64209 -11.53140 -11.24964 -11.15247 -11.08038 -10.92278 -10.78035 -10.69875 -10.47535 -10.30741 -10.14416 -9.96025 -9.89109 -9.66747 -9.23553 -8.91299 -8.33375 -7.59611 -7.46599 -6.73822 -4.40921 2.24265 2.82601 3.09815 3.14516 3.15030 3.76727 3.91331 3.95782 4.57206 4.61999 4.64355 4.70894 4.98412 5.07653 5.23277 5.28520 5.39375 5.47921 5.51814 5.61133 5.63796 5.67698 5.71828 5.74564 5.81312 5.83785 5.88553 6.00621 6.03411 6.07358 6.09091 6.11595 6.18411 6.27012 6.29565 6.36619 6.44425 6.55724 6.66673 6.72985 6.97936 7.02392 7.06250 7.23981 7.40526 7.71027 7.78758 7.94200 8.15125 8.22941 8.53320 8.83829 8.85458 9.04009 10.20953 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.019738 B = 0.003602 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.229972 B = 7771.859377 C = 8208.835306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 H 0.074 0.926 4 C -0.120 4.120 5 C 0.151 3.849 6 H 0.076 0.924 7 N -0.728 5.728 8 C 0.565 3.435 9 O -0.546 6.546 10 C -0.129 4.129 11 C -0.212 4.212 12 C -0.101 4.101 13 C -0.208 4.208 14 C 0.099 3.901 15 C -0.463 4.463 16 H 0.080 0.920 17 C 0.072 3.928 18 N -0.791 5.791 19 Si 0.911 3.089 20 H -0.261 1.261 21 H -0.271 1.271 22 H -0.274 1.274 23 C -0.087 4.087 24 C -0.121 4.121 25 C -0.061 4.061 26 C -0.139 4.139 27 C -0.141 4.141 28 C -0.100 4.100 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.398 0.602 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.283 0.717 39 H 0.133 0.867 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.066 0.934 46 H 0.040 0.960 47 H 0.058 0.942 48 H 0.059 0.941 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.899 -6.155 6.942 16.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.092 0.908 4 C -0.158 4.158 5 C 0.046 3.954 6 H 0.094 0.906 7 N -0.384 5.384 8 C 0.355 3.645 9 O -0.425 6.425 10 C -0.132 4.132 11 C -0.232 4.232 12 C -0.119 4.119 13 C -0.228 4.228 14 C 0.097 3.903 15 C -0.492 4.492 16 H 0.098 0.902 17 C -0.146 4.146 18 N -0.416 5.416 19 Si 0.735 3.265 20 H -0.184 1.184 21 H -0.197 1.197 22 H -0.200 1.200 23 C -0.107 4.107 24 C -0.159 4.159 25 C -0.061 4.061 26 C -0.197 4.197 27 C -0.199 4.199 28 C -0.137 4.137 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.236 0.764 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.151 0.849 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.059 0.941 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.303 -7.014 6.590 16.420 hybrid contribution 0.474 0.402 -0.089 0.627 sum -12.830 -6.612 6.501 15.830 Atomic orbital electron populations 1.21820 0.95258 1.01620 1.01617 1.21220 0.95217 1.00136 0.95013 0.90780 1.21866 0.94384 1.01545 0.98030 1.20772 0.92880 0.83488 0.98237 0.90571 1.46398 1.10322 1.07827 1.73841 1.18737 0.81174 0.89710 0.74857 1.90683 1.55762 1.46889 1.49118 1.19520 0.95716 0.90493 1.07491 1.20340 0.96774 0.92849 1.13235 1.20436 0.95502 0.95023 1.00948 1.21149 0.92968 0.97717 1.10939 1.17615 0.93152 0.90605 0.88968 1.19598 0.94587 1.08377 1.26675 0.90184 1.25930 1.01175 0.93810 0.93669 1.69778 1.38009 1.14953 1.18829 0.86221 0.82100 0.79356 0.78820 1.18439 1.19659 1.19960 1.21650 0.93002 0.97733 0.98303 1.21984 1.02208 0.98081 0.93669 1.20483 0.94549 0.96247 0.94823 1.21860 1.01260 0.99636 0.96924 1.22310 1.01955 0.94955 1.00637 1.21633 0.94809 1.00171 0.97130 0.92762 0.92713 0.92831 0.91402 0.90667 0.76382 0.89464 0.88976 0.88652 0.90633 0.84888 0.91835 0.90544 0.92620 0.92949 0.93099 0.91521 0.94051 0.92309 0.92189 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.19 37.16 0.34 -0.82 16 2 C -0.10 -0.93 2.37 -90.62 -0.21 -1.15 16 3 H 0.07 0.77 5.13 -51.93 -0.27 0.51 16 4 C -0.12 -1.24 4.83 -26.73 -0.13 -1.37 16 5 C 0.15 2.07 2.74 -67.93 -0.19 1.89 16 6 H 0.08 1.17 7.98 -51.93 -0.41 0.76 16 7 N -0.73 -11.62 2.80 -54.74 -0.15 -11.77 16 8 C 0.56 11.98 5.96 -12.31 -0.07 11.91 16 9 O -0.55 -13.39 15.24 5.33 0.08 -13.31 16 10 C -0.13 -2.99 5.87 -105.04 -0.62 -3.61 16 11 C -0.21 -4.37 9.55 -38.92 -0.37 -4.75 16 12 C -0.10 -2.13 10.01 -39.73 -0.40 -2.53 16 13 C -0.21 -4.92 9.78 -38.81 -0.38 -5.30 16 14 C 0.10 2.62 5.54 -106.87 -0.59 2.02 16 15 C -0.46 -12.22 9.06 -37.73 -0.34 -12.57 16 16 H 0.08 2.01 7.88 -52.48 -0.41 1.60 16 17 C 0.07 1.84 5.21 -17.34 -0.09 1.75 16 18 N -0.79 -21.13 10.93 55.55 0.61 -20.53 16 19 Si 0.91 18.99 29.58 -169.99 -5.03 13.96 16 20 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 C -0.09 -2.30 8.20 -38.44 -0.32 -2.62 16 24 C -0.12 -1.62 4.30 -26.73 -0.11 -1.74 16 25 C -0.06 -0.73 0.77 -154.51 -0.12 -0.85 16 26 C -0.14 -1.55 8.40 37.16 0.31 -1.24 16 27 C -0.14 -1.97 7.05 37.16 0.26 -1.71 16 28 C -0.10 -0.98 4.01 -26.73 -0.11 -1.09 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.40 5.70 3.78 -40.82 -0.15 5.54 16 35 H 0.09 1.49 6.38 -52.48 -0.33 1.16 16 36 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 38 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 39 H 0.13 3.85 5.85 -52.49 -0.31 3.54 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 1.28 7.11 -51.93 -0.37 0.91 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.89 3.33 -51.93 -0.17 0.72 16 46 H 0.04 0.54 8.03 -51.93 -0.42 0.12 16 47 H 0.06 1.01 6.57 -51.93 -0.34 0.67 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -28.71 368.73 -9.89 -38.60 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -7.82 Total: 11.24 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -3.13 Total: -23.76 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.45 Total: -32.30 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.08 Total: -13.31 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.71 -9.89 -38.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188687585.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.325 kcal (2) G-P(sol) polarization free energy of solvation -28.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds