Wall clock time and date at job start Tue Mar 31 2020 10:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47272 * 2 1 4 4 C 1.52999 * 109.46757 * 239.99891 * 2 1 3 5 5 C 1.53001 * 109.46757 * 179.97438 * 4 2 1 6 6 H 1.09001 * 109.46844 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47478 * 299.99652 * 5 4 2 8 8 C 1.34772 * 120.00038 * 192.25930 * 7 5 4 9 9 O 1.21542 * 120.00284 * 0.02562 * 8 7 5 10 10 C 1.47889 * 119.99559 * 180.02562 * 8 7 5 11 11 C 1.39925 * 120.02782 * 359.97438 * 10 8 7 12 12 C 1.38324 * 120.35950 * 179.97438 * 11 10 8 13 13 C 1.37757 * 120.41151 * 0.28547 * 12 11 10 14 14 C 1.40748 * 120.03949 * 359.44775 * 13 12 11 15 15 C 1.41438 * 120.17979 * 180.28267 * 14 13 12 16 16 H 1.08004 * 119.99828 * 28.70208 * 15 14 13 17 17 C 1.39934 * 119.99866 * 208.70671 * 15 14 13 18 18 N 1.30832 * 120.00274 * 12.87172 * 17 15 14 19 19 Si 1.86800 * 119.99823 * 192.86865 * 17 15 14 20 20 H 1.48499 * 109.47316 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47065 * 120.00475 * 19 17 15 22 22 H 1.48498 * 109.47127 * 239.99995 * 19 17 15 23 23 C 1.38992 * 120.02413 * 179.97438 * 10 8 7 24 24 C 1.53002 * 109.47369 * 60.00206 * 5 4 2 25 25 C 1.52997 * 109.46826 * 300.00287 * 24 5 4 26 26 C 1.53002 * 109.46826 * 179.97438 * 25 24 5 27 27 C 1.53006 * 109.46810 * 299.99222 * 25 24 5 28 28 C 1.52995 * 109.47774 * 59.99424 * 25 24 5 29 29 H 1.09001 * 109.46844 * 300.00056 * 1 2 3 30 30 H 1.08995 * 109.47446 * 59.99746 * 1 2 3 31 31 H 1.08998 * 109.47237 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46766 * 60.00443 * 4 2 1 33 33 H 1.09002 * 109.47319 * 300.00080 * 4 2 1 34 34 H 0.97010 * 119.99546 * 12.26876 * 7 5 4 35 35 H 1.08004 * 119.81784 * 0.02562 * 11 10 8 36 36 H 1.07999 * 119.79372 * 179.97438 * 12 11 10 37 37 H 1.07998 * 119.97779 * 179.72243 * 13 12 11 38 38 H 0.97004 * 120.00267 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.20557 * 0.03643 * 23 10 8 40 40 H 1.09002 * 109.47003 * 59.99738 * 24 5 4 41 41 H 1.08990 * 109.47250 * 179.97438 * 24 5 4 42 42 H 1.09005 * 109.47287 * 59.99730 * 26 25 24 43 43 H 1.09001 * 109.47013 * 179.97438 * 26 25 24 44 44 H 1.09002 * 109.47003 * 299.99452 * 26 25 24 45 45 H 1.09005 * 109.46819 * 76.96710 * 27 25 24 46 46 H 1.09002 * 109.47116 * 196.96724 * 27 25 24 47 47 H 1.08993 * 109.47378 * 316.97322 * 27 25 24 48 48 H 1.09002 * 109.46832 * 60.00072 * 28 25 24 49 49 H 1.09002 * 109.47446 * 179.97438 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5699 -0.7207 -1.2496 6 1 3.9332 -1.2342 -2.1398 7 7 4.0578 0.6606 -1.2500 8 6 5.3576 0.9161 -1.4982 9 8 6.1250 0.0006 -1.7221 10 6 5.8502 2.3106 -1.4980 11 6 4.9671 3.3651 -1.2408 12 6 5.4205 4.6719 -1.2384 13 6 6.7449 4.9509 -1.4949 14 6 7.6492 3.9030 -1.7502 15 6 9.0108 4.1858 -2.0079 16 1 9.4696 5.0658 -1.5819 17 6 9.7635 3.3253 -2.8149 18 7 9.1642 2.4092 -3.5314 19 14 11.6239 3.4847 -2.8693 20 1 12.0524 4.5896 -1.9745 21 1 12.2431 2.2132 -2.4166 22 1 12.0551 3.7777 -4.2598 23 6 7.1907 2.5747 -1.7533 24 6 4.0805 -1.4416 -0.0003 25 6 3.5705 -0.7204 1.2489 26 6 4.0805 -1.4417 2.4981 27 6 4.0801 0.7223 1.2486 28 6 2.0405 -0.7209 1.2492 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6766 -0.2074 -2.1392 33 1 1.6766 -1.7490 -1.2492 34 1 3.4453 1.3914 -1.0715 35 1 3.9260 3.1574 -1.0422 36 1 4.7309 5.4788 -1.0392 37 1 7.0905 5.9742 -1.4957 38 1 9.6859 1.8129 -4.0911 39 1 7.8758 1.7640 -1.9529 40 1 3.7175 -2.4694 -0.0001 41 1 5.1704 -1.4416 -0.0008 42 1 5.1706 -1.4417 2.4981 43 1 3.7175 -0.9276 3.3881 44 1 3.7172 -2.4693 2.4981 45 1 3.4926 1.3149 0.5472 46 1 3.9827 1.1422 2.2497 47 1 5.1278 0.7375 0.9484 48 1 1.6775 -1.7487 1.2495 49 1 1.6772 -0.2074 2.1395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188687585.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:29 Heat of formation + Delta-G solvation = -49.117337 kcal Electronic energy + Delta-G solvation = -27560.557186 eV Core-core repulsion = 24064.652151 eV Total energy + Delta-G solvation = -3495.905035 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.93166 -39.92282 -38.61052 -35.66040 -35.32788 -34.81492 -32.55126 -31.31661 -30.82595 -28.12639 -27.38989 -27.27044 -27.19414 -24.68384 -22.89884 -22.46107 -21.40961 -21.06300 -19.55547 -19.36868 -17.98923 -17.06279 -16.80266 -16.45636 -16.36386 -15.85977 -15.69737 -15.19332 -15.08414 -14.79811 -14.70113 -14.42870 -14.25655 -13.91146 -13.69378 -13.49866 -13.39045 -13.05167 -12.94979 -12.81388 -12.74458 -12.66782 -12.56349 -12.45089 -12.24389 -12.18600 -11.94596 -11.84310 -11.68783 -11.49711 -11.19266 -11.11714 -11.07031 -10.86591 -10.64032 -9.80030 -9.40868 -9.34808 -8.62857 -6.40366 0.40907 1.00590 1.35299 1.45110 1.51245 2.15036 2.20350 2.33330 2.81870 3.65008 3.68785 3.74403 3.78108 4.04729 4.06694 4.14773 4.34033 4.38528 4.43255 4.44484 4.56146 4.65087 4.69955 4.79441 4.81550 4.87045 4.89714 4.91413 4.96911 5.01849 5.06836 5.09873 5.11862 5.15954 5.19261 5.22216 5.30622 5.31931 5.36032 5.47836 5.49591 5.52487 5.54879 5.62724 5.72329 5.86848 5.92638 6.05632 6.29408 6.53707 6.73175 6.89104 6.94975 7.40763 8.33856 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.019738 B = 0.003602 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.229972 B = 7771.859377 C = 8208.835306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 H 0.067 0.933 4 C -0.111 4.111 5 C 0.145 3.855 6 H 0.055 0.945 7 N -0.701 5.701 8 C 0.563 3.437 9 O -0.590 6.590 10 C -0.138 4.138 11 C -0.191 4.191 12 C -0.097 4.097 13 C -0.213 4.213 14 C 0.068 3.932 15 C -0.500 4.500 16 H 0.082 0.918 17 C 0.027 3.973 18 N -0.833 5.833 19 Si 0.984 3.016 20 H -0.251 1.251 21 H -0.272 1.272 22 H -0.264 1.264 23 C -0.125 4.125 24 C -0.118 4.118 25 C -0.058 4.058 26 C -0.138 4.138 27 C -0.139 4.139 28 C -0.093 4.093 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.409 0.591 35 H 0.133 0.867 36 H 0.139 0.861 37 H 0.108 0.892 38 H 0.284 0.716 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.031 0.969 42 H 0.032 0.968 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.051 0.949 47 H 0.014 0.986 48 H 0.075 0.925 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.555 -5.641 8.185 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 H 0.085 0.915 4 C -0.149 4.149 5 C 0.041 3.959 6 H 0.073 0.927 7 N -0.357 5.357 8 C 0.353 3.647 9 O -0.472 6.472 10 C -0.141 4.141 11 C -0.210 4.210 12 C -0.115 4.115 13 C -0.233 4.233 14 C 0.065 3.935 15 C -0.530 4.530 16 H 0.100 0.900 17 C -0.186 4.186 18 N -0.460 5.460 19 Si 0.804 3.196 20 H -0.175 1.175 21 H -0.197 1.197 22 H -0.189 1.189 23 C -0.146 4.146 24 C -0.156 4.156 25 C -0.058 4.058 26 C -0.196 4.196 27 C -0.196 4.196 28 C -0.131 4.131 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.250 0.750 35 H 0.150 0.850 36 H 0.157 0.843 37 H 0.126 0.874 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.104 0.896 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.070 0.930 47 H 0.034 0.966 48 H 0.094 0.906 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.024 -6.480 7.852 19.836 hybrid contribution 1.418 0.235 -0.400 1.492 sum -15.606 -6.245 7.452 18.387 Atomic orbital electron populations 1.21768 0.93389 1.02467 1.02186 1.21218 0.96652 0.99393 0.94182 0.91519 1.21855 0.90714 1.03273 0.99025 1.21010 0.95716 0.81589 0.97568 0.92678 1.46207 1.08378 1.09574 1.71508 1.18589 0.82612 0.88586 0.74944 1.90659 1.57356 1.47796 1.51371 1.19837 0.95129 0.92543 1.06622 1.20822 0.98316 0.91985 1.09924 1.20924 0.95079 0.96460 0.99065 1.21451 0.94000 0.97662 1.10169 1.17947 0.94146 0.91294 0.90066 1.19874 0.95571 1.09421 1.28170 0.89965 1.26827 1.05977 0.93072 0.92758 1.69892 1.39780 1.16228 1.20085 0.85136 0.75855 0.79315 0.79271 1.17451 1.19683 1.18879 1.21428 0.94257 0.97071 1.01842 1.21932 0.99484 0.99682 0.94535 1.20475 0.96588 0.94568 0.94184 1.21852 0.99879 1.00787 0.97054 1.22283 0.99302 0.96846 1.01213 1.21599 0.92184 1.01467 0.97829 0.92084 0.92341 0.91882 0.90660 0.88553 0.75047 0.84968 0.84308 0.87362 0.90553 0.88698 0.89640 0.95029 0.94903 0.91625 0.91441 0.90909 0.93033 0.96641 0.90590 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.19 71.98 0.66 -0.91 16 2 C -0.10 -1.44 2.37 -10.79 -0.03 -1.47 16 3 H 0.07 1.11 5.13 -2.39 -0.01 1.10 16 4 C -0.11 -1.91 4.83 30.59 0.15 -1.77 16 5 C 0.15 3.88 2.74 44.99 0.12 4.00 16 6 H 0.06 1.73 7.98 -2.39 -0.02 1.71 16 7 N -0.70 -22.09 2.80 -445.37 -1.25 -23.33 16 8 C 0.56 24.90 5.96 86.80 0.52 25.42 16 9 O -0.59 -31.20 15.24 -3.85 -0.06 -31.26 16 10 C -0.14 -6.60 5.87 -20.13 -0.12 -6.71 16 11 C -0.19 -7.50 9.55 22.70 0.22 -7.28 16 12 C -0.10 -3.86 10.01 22.18 0.22 -3.64 16 13 C -0.21 -10.05 9.78 22.77 0.22 -9.83 16 14 C 0.07 3.74 5.54 -21.32 -0.12 3.62 16 15 C -0.50 -27.85 9.06 23.47 0.21 -27.64 16 16 H 0.08 4.33 7.88 -2.91 -0.02 4.30 16 17 C 0.03 1.46 5.21 85.25 0.44 1.90 16 18 N -0.83 -47.76 10.93 21.82 0.24 -47.52 16 19 Si 0.98 40.76 29.58 68.60 2.03 42.79 16 20 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 22 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 23 C -0.13 -7.10 8.20 23.01 0.19 -6.91 16 24 C -0.12 -3.15 4.30 30.59 0.13 -3.01 16 25 C -0.06 -1.29 0.77 -52.18 -0.04 -1.33 16 26 C -0.14 -2.89 8.40 71.98 0.60 -2.29 16 27 C -0.14 -3.76 7.05 71.98 0.51 -3.25 16 28 C -0.09 -1.46 4.01 30.59 0.12 -1.34 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.41 10.77 3.78 -92.70 -0.35 10.42 16 35 H 0.13 3.95 6.38 -2.91 -0.02 3.94 16 36 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 37 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 38 H 0.28 15.02 8.30 -92.71 -0.77 14.25 16 39 H 0.09 6.04 5.85 -2.91 -0.02 6.03 16 40 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.03 1.12 7.11 -2.39 -0.02 1.11 16 42 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.07 1.79 3.33 -2.38 -0.01 1.79 16 46 H 0.05 1.26 8.03 -2.39 -0.02 1.24 16 47 H 0.01 0.53 6.57 -2.39 -0.02 0.51 16 48 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -69.96 368.73 5.57 -64.39 By element: Atomic # 1 Polarization: 36.78 SS G_CDS: 0.59 Total: 37.37 kcal Atomic # 6 Polarization: -46.46 SS G_CDS: 4.02 Total: -42.44 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: -1.01 Total: -70.85 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.06 Total: -31.26 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -69.96 5.57 -64.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188687585.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.272 kcal (2) G-P(sol) polarization free energy of solvation -69.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds