Wall clock time and date at job start Tue Mar 31 2020 12:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86792 * 120.00028 * 2 1 4 4 H 1.48497 * 109.47019 * 270.00018 * 3 2 1 5 5 H 1.48499 * 109.47289 * 30.00035 * 3 2 1 6 6 H 1.48497 * 109.46928 * 150.00147 * 3 2 1 7 7 C 1.39946 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00229 * 163.57274 * 7 2 1 9 9 C 1.41401 * 119.99949 * 343.57531 * 7 2 1 10 10 C 1.40728 * 120.24437 * 334.14984 * 9 7 2 11 11 C 1.37595 * 119.74382 * 179.97438 * 10 9 7 12 12 C 1.38660 * 120.24967 * 0.02562 * 11 10 9 13 13 C 1.38610 * 120.50155 * 359.68133 * 12 11 10 14 14 C 1.37645 * 120.24624 * 0.59741 * 13 12 11 15 15 C 1.50695 * 120.12697 * 179.69859 * 14 13 12 16 16 N 1.46901 * 109.47384 * 259.72755 * 15 14 13 17 17 C 1.46952 * 110.99844 * 66.20085 * 16 15 14 18 18 C 1.53051 * 109.38406 * 183.20532 * 17 16 15 19 19 N 1.46975 * 109.34856 * 301.57004 * 18 17 16 20 20 C 1.46938 * 110.88873 * 59.25013 * 19 18 17 21 21 C 1.53060 * 109.49584 * 60.86140 * 20 19 18 22 22 C 1.53059 * 109.26712 * 62.35079 * 21 20 19 23 23 N 1.46844 * 109.51404 * 59.10518 * 22 21 20 24 24 C 1.46843 * 111.23306 * 298.26354 * 23 22 21 25 25 C 1.53052 * 109.51842 * 61.74064 * 24 23 22 26 26 C 1.46972 * 111.00090 * 190.00368 * 16 15 14 27 27 H 0.96996 * 120.00154 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.13019 * 0.02562 * 10 9 7 29 29 H 1.08007 * 119.87647 * 180.02562 * 11 10 9 30 30 H 1.08001 * 119.74991 * 179.97438 * 12 11 10 31 31 H 1.07996 * 119.88077 * 180.30085 * 13 12 11 32 32 H 1.09007 * 109.46885 * 139.72427 * 15 14 13 33 33 H 1.08996 * 109.47357 * 19.73045 * 15 14 13 34 34 H 1.08998 * 109.48823 * 303.17630 * 17 16 15 35 35 H 1.09002 * 109.48440 * 63.21765 * 17 16 15 36 36 H 1.08999 * 109.49109 * 61.53020 * 18 17 16 37 37 H 1.08994 * 109.49486 * 181.58061 * 18 17 16 38 38 H 1.00897 * 110.99439 * 183.11598 * 19 18 17 39 39 H 1.08997 * 109.51092 * 182.28780 * 21 20 19 40 40 H 1.09005 * 109.50738 * 302.41635 * 21 20 19 41 41 H 1.09004 * 109.45914 * 299.09573 * 22 21 20 42 42 H 1.08993 * 109.45818 * 179.11760 * 22 21 20 43 43 H 1.00907 * 110.99642 * 62.37751 * 23 22 21 44 44 H 1.09000 * 109.46286 * 301.72662 * 24 23 22 45 45 H 1.09002 * 109.46496 * 181.76100 * 24 23 22 46 46 H 1.08994 * 109.50638 * 180.94788 * 25 24 23 47 47 H 1.09002 * 109.53661 * 60.84401 * 25 24 23 48 48 H 1.08999 * 109.48738 * 296.87786 * 26 16 15 49 49 H 1.08995 * 109.48470 * 56.91981 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0463 -1.4000 5 1 1.4397 2.6526 0.7000 6 1 3.5397 1.4400 0.7000 7 6 2.0079 -1.2120 0.0005 8 1 3.0549 -1.2313 -0.2640 9 6 1.3441 -2.4114 0.3473 10 6 0.2131 -2.3792 1.1840 11 6 -0.4252 -3.5525 1.5145 12 6 0.0423 -4.7633 1.0269 13 6 1.1518 -4.8064 0.1972 14 6 1.8095 -3.6458 -0.1419 15 6 3.0195 -3.6964 -1.0387 16 7 4.2378 -3.6036 -0.2231 17 6 4.3905 -4.7889 0.6321 18 6 5.6244 -4.6181 1.5214 19 7 6.8112 -4.4264 0.6759 20 6 6.6586 -3.2423 -0.1807 21 6 6.4931 -1.9971 0.6937 22 6 7.7557 -1.8000 1.5361 23 7 8.9175 -1.6495 0.6507 24 6 9.1242 -2.8531 -0.1647 25 6 7.9025 -3.0816 -1.0579 26 6 5.4244 -3.4113 -1.0687 27 1 -0.4850 0.8400 0.0004 28 1 -0.1531 -1.4371 1.5646 29 1 -1.2938 -3.5302 2.1561 30 1 -0.4647 -5.6794 1.2917 31 1 1.5045 -5.7546 -0.1808 32 1 2.9872 -2.8625 -1.7399 33 1 3.0231 -4.6358 -1.5915 34 1 3.5049 -4.9029 1.2571 35 1 4.5116 -5.6743 0.0080 36 1 5.4916 -3.7480 2.1644 37 1 5.7555 -5.5083 2.1365 38 1 7.6477 -4.3617 1.2364 39 1 6.3392 -1.1244 0.0591 40 1 5.6333 -2.1257 1.3514 41 1 7.9007 -2.6665 2.1814 42 1 7.6475 -0.9050 2.1486 43 1 8.8251 -0.8302 0.0690 44 1 9.2629 -3.7148 0.4882 45 1 10.0097 -2.7228 -0.7868 46 1 8.0489 -3.9844 -1.6508 47 1 7.7715 -2.2273 -1.7220 48 1 5.5563 -4.2803 -1.7132 49 1 5.2930 -2.5200 -1.6822 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222105037.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:45 Heat of formation + Delta-G solvation = 28.906376 kcal Electronic energy + Delta-G solvation = -28022.034129 eV Core-core repulsion = 24561.805208 eV Total energy + Delta-G solvation = -3460.228921 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.201 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -40.35612 -37.99052 -36.61402 -33.89206 -33.58284 -31.84515 -30.74575 -30.29068 -29.38230 -27.24944 -26.21816 -25.00550 -23.23767 -23.09931 -22.50207 -20.93452 -20.62515 -19.32789 -18.38950 -17.11576 -16.88595 -15.45716 -15.39837 -14.98016 -14.82296 -14.55198 -14.47474 -14.34768 -14.05251 -13.82507 -13.59569 -13.28648 -13.13252 -12.59490 -12.35734 -12.26086 -12.06124 -11.59463 -11.44793 -11.42981 -11.22799 -11.16548 -11.06051 -11.01664 -10.81569 -10.72288 -10.63596 -10.46608 -10.26530 -10.21643 -9.48140 -9.27532 -9.12732 -8.42427 -8.29799 -7.66184 -7.32131 -7.27742 -6.71526 -4.28914 2.79474 2.97610 3.07727 3.11947 3.26455 3.95486 4.20935 4.26442 4.44939 4.69928 4.81438 4.89852 4.96772 5.13604 5.30590 5.36419 5.42245 5.56771 5.60091 5.70988 5.75801 5.79438 5.83244 5.88592 5.92663 5.95624 6.03910 6.11133 6.19821 6.20714 6.25857 6.36468 6.43917 6.51401 6.51965 6.56892 6.87609 6.95567 7.13150 7.15765 7.25974 7.29994 7.40035 7.43719 7.65065 7.66272 7.76464 7.97721 8.11609 8.17158 8.35676 8.70811 8.97662 9.04800 10.23141 Molecular weight = 315.20amu Principal moments of inertia in cm(-1) A = 0.012418 B = 0.005320 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.311017 B = 5261.847672 C = 6839.101370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.074 3.926 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.445 4.445 8 H 0.088 0.912 9 C 0.132 3.868 10 C -0.164 4.164 11 C -0.107 4.107 12 C -0.246 4.246 13 C -0.086 4.086 14 C -0.193 4.193 15 C 0.127 3.873 16 N -0.519 5.519 17 C 0.062 3.938 18 C 0.057 3.943 19 N -0.679 5.679 20 C 0.124 3.876 21 C -0.178 4.178 22 C 0.054 3.946 23 N -0.688 5.688 24 C 0.057 3.943 25 C -0.144 4.144 26 C 0.070 3.930 27 H 0.278 0.722 28 H 0.115 0.885 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.014 0.986 34 H 0.085 0.915 35 H 0.027 0.973 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.334 0.666 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.340 0.660 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.066 0.934 48 H 0.030 0.970 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.236 -3.315 -0.038 13.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.474 4.474 8 H 0.106 0.894 9 C 0.129 3.871 10 C -0.183 4.183 11 C -0.125 4.125 12 C -0.265 4.265 13 C -0.105 4.105 14 C -0.195 4.195 15 C 0.001 3.999 16 N -0.243 5.243 17 C -0.066 4.066 18 C -0.072 4.072 19 N -0.311 5.311 20 C 0.032 3.968 21 C -0.218 4.218 22 C -0.076 4.076 23 N -0.316 5.316 24 C -0.073 4.073 25 C -0.185 4.185 26 C -0.059 4.059 27 H 0.089 0.911 28 H 0.133 0.867 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.032 0.968 34 H 0.104 0.896 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.154 0.846 39 H 0.083 0.917 40 H 0.109 0.891 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.157 0.843 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.084 0.916 48 H 0.048 0.952 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.245 -3.374 0.254 13.671 hybrid contribution -0.494 0.846 -0.561 1.129 sum 12.751 -2.529 -0.307 13.003 Atomic orbital electron populations 1.69833 1.07555 1.28956 1.35947 1.25947 0.94627 1.01224 0.92526 0.86425 0.80819 0.81101 0.79051 1.19737 1.20339 1.18450 1.19672 0.97973 0.90419 1.39375 0.89403 1.17353 0.90347 0.91502 0.87919 1.21339 0.99248 0.96556 1.01182 1.20671 0.98523 0.93499 0.99838 1.20286 1.01832 0.96084 1.08303 1.20363 0.96192 0.95667 0.98286 1.19425 0.99922 0.93657 1.06459 1.20603 0.87236 0.98438 0.93628 1.62150 1.01383 1.38346 1.22399 1.22071 0.97391 0.91115 0.96064 1.22032 0.90104 1.00353 0.94738 1.60802 1.04951 1.39657 1.25738 1.20835 0.94267 0.88557 0.93140 1.22807 0.99717 0.98750 1.00565 1.22054 0.88193 1.01954 0.95387 1.60709 1.41191 1.05291 1.24444 1.22011 0.96694 0.93382 0.95239 1.22260 0.95270 1.02442 0.98486 1.22074 0.89537 1.00149 0.94139 0.91112 0.86670 0.89791 0.89899 0.90054 0.90744 0.96806 0.89643 0.95434 0.93795 0.91109 0.84619 0.91651 0.89075 0.91623 0.90778 0.84299 0.90845 0.90885 0.90866 0.91579 0.95151 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.38 10.96 55.55 0.61 -19.77 16 2 C 0.07 1.81 5.16 -17.34 -0.09 1.72 16 3 Si 0.90 18.58 29.59 -169.99 -5.03 13.55 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.44 -11.25 8.18 -37.74 -0.31 -11.55 16 8 H 0.09 2.17 6.85 -52.48 -0.36 1.81 16 9 C 0.13 3.36 5.56 -106.82 -0.59 2.77 16 10 C -0.16 -4.22 8.69 -38.88 -0.34 -4.56 16 11 C -0.11 -2.52 10.02 -39.66 -0.40 -2.92 16 12 C -0.25 -5.51 10.05 -39.29 -0.39 -5.90 16 13 C -0.09 -1.90 8.65 -39.66 -0.34 -2.25 16 14 C -0.19 -4.43 4.64 -103.91 -0.48 -4.92 16 15 C 0.13 2.55 4.29 -4.98 -0.02 2.53 16 16 N -0.52 -9.26 3.81 -235.95 -0.90 -10.16 16 17 C 0.06 1.04 5.37 -3.77 -0.02 1.02 16 18 C 0.06 0.80 6.35 -3.76 -0.02 0.78 16 19 N -0.68 -8.65 6.26 -99.81 -0.62 -9.27 16 20 C 0.12 1.60 0.66 -131.53 -0.09 1.52 16 21 C -0.18 -2.43 4.42 -26.67 -0.12 -2.55 16 22 C 0.05 0.62 6.32 -3.82 -0.02 0.60 16 23 N -0.69 -7.22 6.86 -113.80 -0.78 -8.00 16 24 C 0.06 0.55 6.32 -3.83 -0.02 0.53 16 25 C -0.14 -1.56 5.07 -26.68 -0.14 -1.70 16 26 C 0.07 1.08 4.32 -3.80 -0.02 1.06 16 27 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 28 H 0.12 3.08 6.21 -52.49 -0.33 2.76 16 29 H 0.08 1.79 8.06 -52.48 -0.42 1.37 16 30 H 0.08 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.08 1.62 8.03 -52.49 -0.42 1.20 16 32 H 0.07 1.57 7.23 -51.92 -0.38 1.20 16 33 H 0.01 0.27 7.98 -51.93 -0.41 -0.15 16 34 H 0.09 1.59 6.49 -51.93 -0.34 1.26 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.04 0.66 6.30 -51.93 -0.33 0.34 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.33 3.84 5.42 -39.29 -0.21 3.62 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.09 1.51 5.91 -51.93 -0.31 1.20 16 41 H 0.07 0.75 6.81 -51.93 -0.35 0.40 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.34 3.36 8.86 -39.29 -0.35 3.02 16 44 H 0.07 0.72 6.66 -51.93 -0.35 0.38 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.07 1.13 8.07 -51.93 -0.42 0.72 16 LS Contribution 363.24 15.07 5.47 5.47 Total: -1.00 -25.83 363.24 -12.58 -38.41 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -7.91 Total: 13.59 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: -3.42 Total: -23.82 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: -1.70 Total: -47.21 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -25.83 -12.58 -38.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222105037.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.317 kcal (2) G-P(sol) polarization free energy of solvation -25.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds