Wall clock time and date at job start Tue Mar 31 2020 12:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86792 * 120.00028 * 2 1 4 4 H 1.48497 * 109.47019 * 270.00018 * 3 2 1 5 5 H 1.48499 * 109.47289 * 30.00035 * 3 2 1 6 6 H 1.48497 * 109.46928 * 150.00147 * 3 2 1 7 7 C 1.39946 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00229 * 163.57274 * 7 2 1 9 9 C 1.41401 * 119.99949 * 343.57531 * 7 2 1 10 10 C 1.40728 * 120.24437 * 334.14984 * 9 7 2 11 11 C 1.37595 * 119.74382 * 179.97438 * 10 9 7 12 12 C 1.38660 * 120.24967 * 0.02562 * 11 10 9 13 13 C 1.38610 * 120.50155 * 359.68133 * 12 11 10 14 14 C 1.37645 * 120.24624 * 0.59741 * 13 12 11 15 15 C 1.50695 * 120.12697 * 179.69859 * 14 13 12 16 16 N 1.46901 * 109.47384 * 259.72755 * 15 14 13 17 17 C 1.46952 * 110.99844 * 66.20085 * 16 15 14 18 18 C 1.53051 * 109.38406 * 183.20532 * 17 16 15 19 19 N 1.46975 * 109.34856 * 301.57004 * 18 17 16 20 20 C 1.46938 * 110.88873 * 59.25013 * 19 18 17 21 21 C 1.53060 * 109.49584 * 60.86140 * 20 19 18 22 22 C 1.53059 * 109.26712 * 62.35079 * 21 20 19 23 23 N 1.46844 * 109.51404 * 59.10518 * 22 21 20 24 24 C 1.46843 * 111.23306 * 298.26354 * 23 22 21 25 25 C 1.53052 * 109.51842 * 61.74064 * 24 23 22 26 26 C 1.46972 * 111.00090 * 190.00368 * 16 15 14 27 27 H 0.96996 * 120.00154 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.13019 * 0.02562 * 10 9 7 29 29 H 1.08007 * 119.87647 * 180.02562 * 11 10 9 30 30 H 1.08001 * 119.74991 * 179.97438 * 12 11 10 31 31 H 1.07996 * 119.88077 * 180.30085 * 13 12 11 32 32 H 1.09007 * 109.46885 * 139.72427 * 15 14 13 33 33 H 1.08996 * 109.47357 * 19.73045 * 15 14 13 34 34 H 1.08998 * 109.48823 * 303.17630 * 17 16 15 35 35 H 1.09002 * 109.48440 * 63.21765 * 17 16 15 36 36 H 1.08999 * 109.49109 * 61.53020 * 18 17 16 37 37 H 1.08994 * 109.49486 * 181.58061 * 18 17 16 38 38 H 1.00897 * 110.99439 * 183.11598 * 19 18 17 39 39 H 1.08997 * 109.51092 * 182.28780 * 21 20 19 40 40 H 1.09005 * 109.50738 * 302.41635 * 21 20 19 41 41 H 1.09004 * 109.45914 * 299.09573 * 22 21 20 42 42 H 1.08993 * 109.45818 * 179.11760 * 22 21 20 43 43 H 1.00907 * 110.99642 * 62.37751 * 23 22 21 44 44 H 1.09000 * 109.46286 * 301.72662 * 24 23 22 45 45 H 1.09002 * 109.46496 * 181.76100 * 24 23 22 46 46 H 1.08994 * 109.50638 * 180.94788 * 25 24 23 47 47 H 1.09002 * 109.53661 * 60.84401 * 25 24 23 48 48 H 1.08999 * 109.48738 * 296.87786 * 26 16 15 49 49 H 1.08995 * 109.48470 * 56.91981 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0463 -1.4000 5 1 1.4397 2.6526 0.7000 6 1 3.5397 1.4400 0.7000 7 6 2.0079 -1.2120 0.0005 8 1 3.0549 -1.2313 -0.2640 9 6 1.3441 -2.4114 0.3473 10 6 0.2131 -2.3792 1.1840 11 6 -0.4252 -3.5525 1.5145 12 6 0.0423 -4.7633 1.0269 13 6 1.1518 -4.8064 0.1972 14 6 1.8095 -3.6458 -0.1419 15 6 3.0195 -3.6964 -1.0387 16 7 4.2378 -3.6036 -0.2231 17 6 4.3905 -4.7889 0.6321 18 6 5.6244 -4.6181 1.5214 19 7 6.8112 -4.4264 0.6759 20 6 6.6586 -3.2423 -0.1807 21 6 6.4931 -1.9971 0.6937 22 6 7.7557 -1.8000 1.5361 23 7 8.9175 -1.6495 0.6507 24 6 9.1242 -2.8531 -0.1647 25 6 7.9025 -3.0816 -1.0579 26 6 5.4244 -3.4113 -1.0687 27 1 -0.4850 0.8400 0.0004 28 1 -0.1531 -1.4371 1.5646 29 1 -1.2938 -3.5302 2.1561 30 1 -0.4647 -5.6794 1.2917 31 1 1.5045 -5.7546 -0.1808 32 1 2.9872 -2.8625 -1.7399 33 1 3.0231 -4.6358 -1.5915 34 1 3.5049 -4.9029 1.2571 35 1 4.5116 -5.6743 0.0080 36 1 5.4916 -3.7480 2.1644 37 1 5.7555 -5.5083 2.1365 38 1 7.6477 -4.3617 1.2364 39 1 6.3392 -1.1244 0.0591 40 1 5.6333 -2.1257 1.3514 41 1 7.9007 -2.6665 2.1814 42 1 7.6475 -0.9050 2.1486 43 1 8.8251 -0.8302 0.0690 44 1 9.2629 -3.7148 0.4882 45 1 10.0097 -2.7228 -0.7868 46 1 8.0489 -3.9844 -1.6508 47 1 7.7715 -2.2273 -1.7220 48 1 5.5563 -4.2803 -1.7132 49 1 5.2930 -2.5200 -1.6822 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222105037.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:43 Heat of formation + Delta-G solvation = 12.673275 kcal Electronic energy + Delta-G solvation = -28022.738049 eV Core-core repulsion = 24561.805208 eV Total energy + Delta-G solvation = -3460.932841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.201 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.47082 -39.65539 -37.92228 -35.47408 -35.13054 -32.92762 -32.00451 -31.70434 -31.22118 -28.47697 -27.72524 -26.72021 -24.63873 -24.09676 -23.57987 -22.76694 -21.87117 -21.00527 -19.51165 -18.98674 -17.97522 -17.17674 -16.65585 -16.34238 -16.05068 -15.90802 -15.76162 -15.59394 -15.35557 -15.25059 -14.86948 -14.75586 -14.46653 -14.31530 -13.57946 -13.39674 -13.34360 -13.23453 -12.90389 -12.82842 -12.72702 -12.64169 -12.56719 -12.39823 -12.19522 -12.12078 -12.02112 -11.80213 -11.53526 -11.36105 -11.30682 -11.04299 -10.97233 -9.44044 -9.29458 -9.23317 -9.18731 -8.96873 -8.56703 -6.22000 1.00885 1.13663 1.36584 1.47184 1.54305 2.21546 2.79388 3.10944 3.17585 3.38760 3.79768 3.86418 3.88804 3.92079 4.18261 4.20295 4.25964 4.34750 4.35292 4.41312 4.47285 4.54512 4.57432 4.70808 4.71394 4.73823 4.74500 4.82313 4.83505 4.98056 5.01357 5.02609 5.04547 5.12914 5.14220 5.25793 5.33959 5.39112 5.40899 5.56440 5.80606 5.99087 6.05408 6.09040 6.16337 6.24486 6.29801 6.37499 6.45014 6.48650 6.51433 6.80405 7.07619 7.15520 8.39894 Molecular weight = 315.20amu Principal moments of inertia in cm(-1) A = 0.012418 B = 0.005320 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.311017 B = 5261.847672 C = 6839.101370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.034 3.966 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.466 4.466 8 H 0.084 0.916 9 C 0.104 3.896 10 C -0.193 4.193 11 C -0.115 4.115 12 C -0.244 4.244 13 C -0.090 4.090 14 C -0.194 4.194 15 C 0.136 3.864 16 N -0.529 5.529 17 C 0.066 3.934 18 C 0.064 3.936 19 N -0.671 5.671 20 C 0.128 3.872 21 C -0.170 4.170 22 C 0.063 3.937 23 N -0.686 5.686 24 C 0.061 3.939 25 C -0.137 4.137 26 C 0.070 3.930 27 H 0.283 0.717 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.057 0.943 33 H 0.023 0.977 34 H 0.063 0.937 35 H 0.029 0.971 36 H 0.031 0.969 37 H 0.091 0.909 38 H 0.347 0.653 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.344 0.656 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.031 0.969 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.538 -4.175 -0.185 16.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.180 4.180 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.496 4.496 8 H 0.102 0.898 9 C 0.101 3.899 10 C -0.213 4.213 11 C -0.133 4.133 12 C -0.263 4.263 13 C -0.108 4.108 14 C -0.196 4.196 15 C 0.009 3.991 16 N -0.253 5.253 17 C -0.062 4.062 18 C -0.066 4.066 19 N -0.305 5.305 20 C 0.036 3.964 21 C -0.212 4.212 22 C -0.067 4.067 23 N -0.314 5.314 24 C -0.069 4.069 25 C -0.177 4.177 26 C -0.058 4.058 27 H 0.093 0.907 28 H 0.113 0.887 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.075 0.925 33 H 0.042 0.958 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.110 0.890 38 H 0.168 0.832 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.162 0.838 44 H 0.095 0.905 45 H 0.110 0.890 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.050 0.950 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.563 -4.246 0.109 16.133 hybrid contribution -1.254 0.991 -0.525 1.682 sum 14.310 -3.255 -0.416 14.681 Atomic orbital electron populations 1.69900 1.08879 1.29972 1.37002 1.26685 0.95287 1.04195 0.91821 0.85417 0.79346 0.77016 0.79262 1.18947 1.19705 1.18407 1.19779 0.97875 0.91293 1.40617 0.89785 1.17676 0.90882 0.92757 0.88588 1.21312 1.00586 0.96647 1.02750 1.20921 0.98982 0.93368 1.00036 1.20648 1.01659 0.96640 1.07371 1.20662 0.95881 0.96373 0.97914 1.19763 1.00615 0.93253 1.05925 1.20422 0.87512 0.98111 0.93040 1.62052 1.01412 1.39186 1.22668 1.22014 0.97791 0.90601 0.95815 1.21936 0.89576 1.00785 0.94257 1.60776 1.04875 1.39273 1.25571 1.20798 0.94232 0.88298 0.93046 1.22711 0.99702 0.98580 1.00158 1.21942 0.87424 1.02110 0.95224 1.60728 1.40058 1.05943 1.24714 1.22051 0.96643 0.93052 0.95118 1.22215 0.94408 1.02801 0.98266 1.22127 0.89592 0.99740 0.94354 0.90660 0.88688 0.87968 0.87051 0.87538 0.92451 0.95848 0.91879 0.95249 0.95082 0.89036 0.83244 0.92953 0.92280 0.91166 0.90907 0.83773 0.90536 0.88988 0.90393 0.91364 0.95049 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.01 10.96 21.83 0.24 -43.77 16 2 C 0.03 1.71 5.16 85.26 0.44 2.15 16 3 Si 0.97 38.98 29.59 68.60 2.03 41.01 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 6 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 7 C -0.47 -24.48 8.18 23.46 0.19 -24.29 16 8 H 0.08 4.34 6.85 -2.91 -0.02 4.32 16 9 C 0.10 5.48 5.56 -21.29 -0.12 5.36 16 10 C -0.19 -10.32 8.69 22.73 0.20 -10.13 16 11 C -0.11 -5.44 10.02 22.22 0.22 -5.22 16 12 C -0.24 -10.67 10.05 22.46 0.23 -10.44 16 13 C -0.09 -3.88 8.65 22.22 0.19 -3.69 16 14 C -0.19 -9.04 4.64 -19.40 -0.09 -9.13 16 15 C 0.14 5.53 4.29 85.56 0.37 5.89 16 16 N -0.53 -19.02 3.81 -900.41 -3.43 -22.44 16 17 C 0.07 2.17 5.37 86.31 0.46 2.63 16 18 C 0.06 1.72 6.35 86.31 0.55 2.27 16 19 N -0.67 -15.74 6.26 -469.69 -2.94 -18.68 16 20 C 0.13 3.15 0.66 3.55 0.00 3.16 16 21 C -0.17 -4.59 4.42 30.63 0.14 -4.45 16 22 C 0.06 1.36 6.32 86.33 0.55 1.91 16 23 N -0.69 -12.68 6.86 -513.96 -3.53 -16.21 16 24 C 0.06 0.99 6.32 86.33 0.55 1.54 16 25 C -0.14 -2.63 5.07 30.63 0.16 -2.47 16 26 C 0.07 2.14 4.32 86.28 0.37 2.52 16 27 H 0.28 13.73 8.30 -92.71 -0.77 12.96 16 28 H 0.10 5.36 6.21 -2.91 -0.02 5.35 16 29 H 0.10 4.35 8.06 -2.91 -0.02 4.33 16 30 H 0.11 4.20 8.06 -2.91 -0.02 4.17 16 31 H 0.11 4.04 8.03 -2.91 -0.02 4.01 16 32 H 0.06 2.50 7.23 -2.38 -0.02 2.49 16 33 H 0.02 0.89 7.98 -2.39 -0.02 0.87 16 34 H 0.06 2.35 6.49 -2.39 -0.02 2.33 16 35 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.03 0.93 6.30 -2.39 -0.02 0.91 16 37 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.35 6.98 5.42 -89.70 -0.49 6.50 16 39 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.06 1.99 5.91 -2.38 -0.01 1.97 16 41 H 0.07 1.46 6.81 -2.38 -0.02 1.44 16 42 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.34 6.01 8.86 -89.69 -0.79 5.21 16 44 H 0.08 1.23 6.66 -2.39 -0.02 1.22 16 45 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.06 2.03 8.07 -2.39 -0.02 2.01 16 Total: -1.00 -56.96 363.24 -3.56 -60.52 By element: Atomic # 1 Polarization: 42.30 SS G_CDS: -0.33 Total: 41.97 kcal Atomic # 6 Polarization: -46.79 SS G_CDS: 4.40 Total: -42.40 kcal Atomic # 7 Polarization: -91.45 SS G_CDS: -9.66 Total: -101.11 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -56.96 -3.56 -60.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222105037.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.190 kcal (2) G-P(sol) polarization free energy of solvation -56.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds