Wall clock time and date at job start Tue Mar 31 2020 12:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00152 * 2 1 4 4 H 1.09001 * 107.72071 * 33.75696 * 3 2 1 5 5 C 1.51144 * 107.86750 * 277.52904 * 3 2 1 6 6 C 1.52975 * 110.38088 * 269.84283 * 5 3 2 7 7 C 1.52099 * 106.61832 * 294.63145 * 6 5 3 8 8 C 1.50988 * 111.29937 * 65.51136 * 7 6 5 9 9 H 1.08997 * 108.37973 * 206.40077 * 8 7 6 10 10 C 1.54785 * 109.94301 * 88.35223 * 8 7 6 11 11 N 1.48932 * 103.79635 * 209.03026 * 10 8 7 12 12 C 1.46903 * 111.00042 * 159.91481 * 11 10 8 13 13 C 1.50698 * 109.47042 * 69.87573 * 12 11 10 14 14 C 1.37646 * 120.12386 * 260.29781 * 13 12 11 15 15 C 1.38616 * 120.24310 * 180.25748 * 14 13 12 16 16 C 1.38649 * 120.50344 * 359.43812 * 15 14 13 17 17 C 1.37594 * 120.24938 * 0.28140 * 16 15 14 18 18 C 1.40693 * 120.13452 * 79.99794 * 13 12 11 19 19 C 1.41399 * 120.23790 * 0.04316 * 18 13 12 20 20 H 1.08003 * 120.00245 * 334.16151 * 19 18 13 21 21 C 1.39949 * 119.99747 * 154.15963 * 19 18 13 22 22 N 1.30823 * 119.99950 * 343.51436 * 21 19 18 23 23 Si 1.86797 * 120.00001 * 163.51867 * 21 19 18 24 24 H 1.48498 * 109.47372 * 89.99910 * 23 21 19 25 25 H 1.48503 * 109.47184 * 210.00198 * 23 21 19 26 26 H 1.48504 * 109.47023 * 329.99598 * 23 21 19 27 27 C 1.48905 * 103.58536 * 40.72496 * 11 10 8 28 28 C 1.49242 * 107.89934 * 149.99960 * 3 2 1 29 29 H 1.09007 * 106.89710 * 246.32967 * 28 3 2 30 30 H 1.08996 * 109.47421 * 300.00245 * 1 2 3 31 31 H 1.09011 * 109.46806 * 60.00028 * 1 2 3 32 32 H 1.08997 * 109.47315 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.32340 * 30.12070 * 5 3 2 34 34 H 1.09003 * 109.32344 * 149.57048 * 5 3 2 35 35 H 1.09002 * 109.90729 * 54.19865 * 6 5 3 36 36 H 1.08995 * 109.91594 * 175.35449 * 6 5 3 37 37 H 1.09009 * 110.12256 * 304.26917 * 7 6 5 38 38 H 1.08996 * 107.83753 * 185.26350 * 7 6 5 39 39 H 1.09002 * 110.56299 * 90.45515 * 10 8 7 40 40 H 1.08999 * 110.56090 * 327.60749 * 10 8 7 41 41 H 1.09001 * 109.46965 * 309.87091 * 12 11 10 42 42 H 1.08995 * 109.46809 * 189.87340 * 12 11 10 43 43 H 1.08004 * 119.87797 * 359.97438 * 14 13 12 44 44 H 1.08003 * 119.74442 * 179.72437 * 15 14 13 45 45 H 1.08001 * 119.87630 * 180.25673 * 16 15 14 46 46 H 1.08002 * 120.13079 * 180.02562 * 17 16 15 47 47 H 0.97002 * 119.99741 * 179.97438 * 22 21 19 48 48 H 1.09001 * 110.54807 * 78.00539 * 27 11 10 49 49 H 1.09005 * 110.54895 * 200.81413 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3566 1.9597 0.5770 5 6 2.0267 1.8057 -1.4261 6 6 3.3328 1.4072 -2.1155 7 6 4.4481 2.1523 -1.3984 8 6 4.5891 1.6854 0.0306 9 1 5.0159 2.4988 0.6174 10 6 5.5584 0.4805 0.0991 11 7 5.0792 -0.2942 1.2774 12 6 5.5546 -1.6831 1.2230 13 6 7.0428 -1.7142 1.4584 14 6 7.9085 -1.8198 0.3935 15 6 9.2776 -1.8541 0.6075 16 6 9.7914 -1.7709 1.8926 17 6 8.9449 -1.6591 2.9716 18 6 7.5529 -1.6292 2.7668 19 6 6.6733 -1.5149 3.8680 20 1 5.6920 -1.0844 3.7330 21 6 7.0742 -1.9598 5.1329 22 7 8.1026 -2.7600 5.2491 23 14 6.1409 -1.4112 6.6551 24 1 5.0456 -2.3732 6.9378 25 1 7.0685 -1.3627 7.8138 26 1 5.5668 -0.0613 6.4239 27 6 3.5963 -0.2325 1.1571 28 6 3.3204 1.2242 0.7101 29 1 3.2224 1.8106 1.6238 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.1860 1.3742 -1.9695 34 1 1.9347 2.8919 -1.4284 35 1 3.4827 0.3307 -2.0328 36 1 3.3027 1.6991 -3.1652 37 1 4.2493 3.2240 -1.4072 38 1 5.3777 1.9567 -1.9327 39 1 6.5820 0.8210 0.2554 40 1 5.4877 -0.1197 -0.8080 41 1 5.3328 -2.1049 0.2427 42 1 5.0527 -2.2692 1.9928 43 1 7.5195 -1.8808 -0.6122 44 1 9.9494 -1.9416 -0.2336 45 1 10.8600 -1.7944 2.0474 46 1 9.3472 -1.5940 3.9718 47 1 8.3808 -3.0681 6.1259 48 1 3.2441 -0.9371 0.4036 49 1 3.1257 -0.4331 2.1196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235515845.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:40 Heat of formation + Delta-G solvation = -26.247989 kcal Electronic energy + Delta-G solvation = -27520.011027 eV Core-core repulsion = 24025.097681 eV Total energy + Delta-G solvation = -3494.913345 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.40179 -37.95715 -37.08242 -35.16885 -33.51428 -31.83167 -31.00959 -29.50472 -29.08246 -26.70650 -26.59987 -25.56805 -24.54850 -22.24887 -21.86541 -20.89404 -20.69743 -19.30906 -18.12873 -17.03586 -16.80906 -16.19495 -15.67192 -15.25083 -15.01746 -14.51412 -14.18449 -14.08809 -13.97210 -13.70978 -13.31215 -13.08173 -12.76438 -12.60833 -12.42418 -12.29973 -12.00106 -11.60436 -11.51161 -11.43246 -11.19756 -11.13738 -11.02864 -10.90233 -10.87491 -10.56775 -10.42249 -10.38959 -10.21914 -10.08681 -9.91955 -9.42469 -9.38823 -9.16806 -9.04318 -7.71857 -7.24956 -7.19815 -6.63672 -4.20512 2.87400 3.06778 3.14321 3.20338 3.34305 3.71123 4.03812 4.53306 4.56380 4.73591 4.78541 4.93661 5.01836 5.12528 5.16204 5.22317 5.25949 5.39722 5.52052 5.54691 5.60100 5.66939 5.81724 5.84099 5.89049 5.95088 6.07417 6.10655 6.11887 6.19223 6.24426 6.31247 6.34020 6.38744 6.51458 6.54453 6.59342 6.63902 6.66938 6.96871 7.15716 7.22156 7.37590 7.48193 7.56527 7.73471 7.83769 8.04350 8.19123 8.26062 8.43921 8.79479 9.05991 9.13143 10.31031 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013548 B = 0.004419 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.295988 B = 6335.083883 C = 7736.262278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.380 6.380 3 C 0.110 3.890 4 H 0.049 0.951 5 C -0.139 4.139 6 C -0.113 4.113 7 C -0.110 4.110 8 C -0.078 4.078 9 H 0.072 0.928 10 C 0.045 3.955 11 N -0.495 5.495 12 C 0.116 3.884 13 C -0.191 4.191 14 C -0.086 4.086 15 C -0.246 4.246 16 C -0.107 4.107 17 C -0.164 4.164 18 C 0.131 3.869 19 C -0.445 4.445 20 H 0.089 0.911 21 C 0.073 3.927 22 N -0.799 5.799 23 Si 0.903 3.097 24 H -0.272 1.272 25 H -0.279 1.279 26 H -0.260 1.260 27 C 0.048 3.952 28 C -0.083 4.083 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.036 0.964 41 H 0.016 0.984 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.115 0.885 47 H 0.277 0.723 48 H 0.055 0.945 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.169 8.099 -9.480 17.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.299 6.299 3 C 0.052 3.948 4 H 0.067 0.933 5 C -0.177 4.177 6 C -0.150 4.150 7 C -0.148 4.148 8 C -0.097 4.097 9 H 0.091 0.909 10 C -0.083 4.083 11 N -0.218 5.218 12 C -0.010 4.010 13 C -0.193 4.193 14 C -0.105 4.105 15 C -0.266 4.266 16 C -0.126 4.126 17 C -0.184 4.184 18 C 0.128 3.872 19 C -0.475 4.475 20 H 0.107 0.893 21 C -0.143 4.143 22 N -0.425 5.425 23 Si 0.728 3.272 24 H -0.197 1.197 25 H -0.204 1.204 26 H -0.184 1.184 27 C -0.080 4.080 28 C -0.102 4.102 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.055 0.945 41 H 0.034 0.966 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.133 0.867 47 H 0.088 0.912 48 H 0.073 0.927 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.743 8.002 -8.735 16.680 hybrid contribution -0.777 -0.012 0.038 0.778 sum -12.520 7.990 -8.697 17.212 Atomic orbital electron populations 1.22762 0.82216 1.02456 0.99488 1.88118 1.18645 1.28033 1.95087 1.20897 0.94536 0.84240 0.95121 0.93310 1.21764 0.98992 1.00713 0.96201 1.21287 0.94419 1.01079 0.98248 1.21010 0.99205 0.99385 0.95229 1.20821 0.94627 0.98728 0.95548 0.90926 1.23341 0.98945 0.93699 0.92314 1.65897 1.04848 1.13108 1.37928 1.20751 0.94303 0.87969 0.98025 1.19458 0.92307 1.13756 0.93730 1.20346 0.93396 1.00796 0.95946 1.20269 0.94345 1.16434 0.95549 1.20654 0.97251 1.01278 0.93431 1.21330 0.93519 1.05994 0.97530 1.17365 0.91890 0.86873 0.91112 1.19716 1.01957 1.34347 0.91462 0.89263 1.25955 0.94667 0.92880 1.00832 1.69845 1.23274 1.23532 1.25808 0.86404 0.79890 0.80472 0.80478 1.19726 1.20409 1.18410 1.23097 0.89683 0.94811 1.00366 1.20497 0.92274 0.99024 0.98393 0.91214 0.94293 0.94493 0.89907 0.91579 0.91600 0.91253 0.92075 0.92125 0.91827 0.90195 0.94539 0.96604 0.90656 0.90141 0.89970 0.89840 0.86674 0.91185 0.92734 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.66 101.05 1.08 1.33 16 2 O -0.38 -4.78 7.66 -35.23 -0.27 -5.05 16 3 C 0.11 1.27 2.80 -29.52 -0.08 1.19 16 4 H 0.05 0.51 7.70 -51.93 -0.40 0.11 16 5 C -0.14 -1.39 5.47 -27.68 -0.15 -1.54 16 6 C -0.11 -1.21 5.97 -27.20 -0.16 -1.37 16 7 C -0.11 -1.24 5.17 -28.20 -0.15 -1.39 16 8 C -0.08 -1.08 2.97 -91.63 -0.27 -1.35 16 9 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 10 C 0.05 0.77 5.09 -1.76 -0.01 0.76 16 11 N -0.49 -9.51 5.13 -230.20 -1.18 -10.69 16 12 C 0.12 2.47 4.15 -4.98 -0.02 2.45 16 13 C -0.19 -4.59 5.00 -103.91 -0.52 -5.11 16 14 C -0.09 -1.97 9.42 -39.66 -0.37 -2.34 16 15 C -0.25 -5.70 10.05 -39.29 -0.39 -6.10 16 16 C -0.11 -2.61 10.02 -39.66 -0.40 -3.01 16 17 C -0.16 -4.37 8.68 -38.88 -0.34 -4.71 16 18 C 0.13 3.47 5.56 -106.83 -0.59 2.88 16 19 C -0.45 -11.77 8.18 -37.74 -0.31 -12.08 16 20 H 0.09 2.33 6.85 -52.48 -0.36 1.97 16 21 C 0.07 1.87 5.16 -17.34 -0.09 1.78 16 22 N -0.80 -20.97 10.97 55.55 0.61 -20.36 16 23 Si 0.90 19.21 29.59 -169.99 -5.03 14.18 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 25 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 26 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 27 C 0.05 0.80 5.16 -1.73 -0.01 0.79 16 28 C -0.08 -1.14 2.77 -92.43 -0.26 -1.40 16 29 H 0.07 0.97 8.08 -51.92 -0.42 0.55 16 30 H 0.04 0.33 8.04 -51.93 -0.42 -0.09 16 31 H 0.04 0.29 7.13 -51.92 -0.37 -0.08 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.62 6.87 -51.93 -0.36 0.27 16 34 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 35 H 0.07 0.88 8.11 -51.93 -0.42 0.46 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.60 8.07 -51.92 -0.42 0.18 16 38 H 0.06 0.72 7.83 -51.93 -0.41 0.31 16 39 H 0.08 1.50 8.12 -51.93 -0.42 1.08 16 40 H 0.04 0.61 7.64 -51.93 -0.40 0.22 16 41 H 0.02 0.32 7.76 -51.93 -0.40 -0.08 16 42 H 0.08 1.69 7.34 -51.93 -0.38 1.31 16 43 H 0.08 1.66 8.03 -52.48 -0.42 1.24 16 44 H 0.08 1.70 8.06 -52.48 -0.42 1.28 16 45 H 0.08 1.83 8.06 -52.49 -0.42 1.41 16 46 H 0.12 3.17 6.21 -52.49 -0.33 2.84 16 47 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 48 H 0.05 0.93 6.60 -51.93 -0.34 0.58 16 49 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 372.39 15.07 5.61 5.61 Total: -1.00 -27.85 372.39 -11.66 -39.51 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -8.35 Total: 6.03 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: -3.05 Total: -29.23 kcal Atomic # 7 Polarization: -30.48 SS G_CDS: -0.57 Total: -31.05 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.27 Total: -5.05 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -27.85 -11.66 -39.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235515845.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.267 kcal (2) G-P(sol) polarization free energy of solvation -27.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds