Wall clock time and date at job start Tue Mar 31 2020 12:26:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42896 * 1
3 3 C 1.42899 * 114.00152 * 2 1
4 4 H 1.09001 * 107.72071 * 33.75696 * 3 2 1
5 5 C 1.51144 * 107.86750 * 277.52904 * 3 2 1
6 6 C 1.52975 * 110.38088 * 269.84283 * 5 3 2
7 7 C 1.52099 * 106.61832 * 294.63145 * 6 5 3
8 8 C 1.50988 * 111.29937 * 65.51136 * 7 6 5
9 9 H 1.08997 * 108.37973 * 206.40077 * 8 7 6
10 10 C 1.54785 * 109.94301 * 88.35223 * 8 7 6
11 11 N 1.48932 * 103.79635 * 209.03026 * 10 8 7
12 12 C 1.46903 * 111.00042 * 159.91481 * 11 10 8
13 13 C 1.50698 * 109.47042 * 69.87573 * 12 11 10
14 14 C 1.37646 * 120.12386 * 260.29781 * 13 12 11
15 15 C 1.38616 * 120.24310 * 180.25748 * 14 13 12
16 16 C 1.38649 * 120.50344 * 359.43812 * 15 14 13
17 17 C 1.37594 * 120.24938 * 0.28140 * 16 15 14
18 18 C 1.40693 * 120.13452 * 79.99794 * 13 12 11
19 19 C 1.41399 * 120.23790 * 0.04316 * 18 13 12
20 20 H 1.08003 * 120.00245 * 334.16151 * 19 18 13
21 21 C 1.39949 * 119.99747 * 154.15963 * 19 18 13
22 22 N 1.30823 * 119.99950 * 343.51436 * 21 19 18
23 23 Si 1.86797 * 120.00001 * 163.51867 * 21 19 18
24 24 H 1.48498 * 109.47372 * 89.99910 * 23 21 19
25 25 H 1.48503 * 109.47184 * 210.00198 * 23 21 19
26 26 H 1.48504 * 109.47023 * 329.99598 * 23 21 19
27 27 C 1.48905 * 103.58536 * 40.72496 * 11 10 8
28 28 C 1.49242 * 107.89934 * 149.99960 * 3 2 1
29 29 H 1.09007 * 106.89710 * 246.32967 * 28 3 2
30 30 H 1.08996 * 109.47421 * 300.00245 * 1 2 3
31 31 H 1.09011 * 109.46806 * 60.00028 * 1 2 3
32 32 H 1.08997 * 109.47315 * 179.97438 * 1 2 3
33 33 H 1.09002 * 109.32340 * 30.12070 * 5 3 2
34 34 H 1.09003 * 109.32344 * 149.57048 * 5 3 2
35 35 H 1.09002 * 109.90729 * 54.19865 * 6 5 3
36 36 H 1.08995 * 109.91594 * 175.35449 * 6 5 3
37 37 H 1.09009 * 110.12256 * 304.26917 * 7 6 5
38 38 H 1.08996 * 107.83753 * 185.26350 * 7 6 5
39 39 H 1.09002 * 110.56299 * 90.45515 * 10 8 7
40 40 H 1.08999 * 110.56090 * 327.60749 * 10 8 7
41 41 H 1.09001 * 109.46965 * 309.87091 * 12 11 10
42 42 H 1.08995 * 109.46809 * 189.87340 * 12 11 10
43 43 H 1.08004 * 119.87797 * 359.97438 * 14 13 12
44 44 H 1.08003 * 119.74442 * 179.72437 * 15 14 13
45 45 H 1.08001 * 119.87630 * 180.25673 * 16 15 14
46 46 H 1.08002 * 120.13079 * 180.02562 * 17 16 15
47 47 H 0.97002 * 119.99741 * 179.97438 * 22 21 19
48 48 H 1.09001 * 110.54807 * 78.00539 * 27 11 10
49 49 H 1.09005 * 110.54895 * 200.81413 * 27 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 1 1.3566 1.9597 0.5770
5 6 2.0267 1.8057 -1.4261
6 6 3.3328 1.4072 -2.1155
7 6 4.4481 2.1523 -1.3984
8 6 4.5891 1.6854 0.0306
9 1 5.0159 2.4988 0.6174
10 6 5.5584 0.4805 0.0991
11 7 5.0792 -0.2942 1.2774
12 6 5.5546 -1.6831 1.2230
13 6 7.0428 -1.7142 1.4584
14 6 7.9085 -1.8198 0.3935
15 6 9.2776 -1.8541 0.6075
16 6 9.7914 -1.7709 1.8926
17 6 8.9449 -1.6591 2.9716
18 6 7.5529 -1.6292 2.7668
19 6 6.6733 -1.5149 3.8680
20 1 5.6920 -1.0844 3.7330
21 6 7.0742 -1.9598 5.1329
22 7 8.1026 -2.7600 5.2491
23 14 6.1409 -1.4112 6.6551
24 1 5.0456 -2.3732 6.9378
25 1 7.0685 -1.3627 7.8138
26 1 5.5668 -0.0613 6.4239
27 6 3.5963 -0.2325 1.1571
28 6 3.3204 1.2242 0.7101
29 1 3.2224 1.8106 1.6238
30 1 -0.3634 0.5138 0.8899
31 1 -0.3633 0.5139 -0.8901
32 1 -0.3634 -1.0276 -0.0005
33 1 1.1860 1.3742 -1.9695
34 1 1.9347 2.8919 -1.4284
35 1 3.4827 0.3307 -2.0328
36 1 3.3027 1.6991 -3.1652
37 1 4.2493 3.2240 -1.4072
38 1 5.3777 1.9567 -1.9327
39 1 6.5820 0.8210 0.2554
40 1 5.4877 -0.1197 -0.8080
41 1 5.3328 -2.1049 0.2427
42 1 5.0527 -2.2692 1.9928
43 1 7.5195 -1.8808 -0.6122
44 1 9.9494 -1.9416 -0.2336
45 1 10.8600 -1.7944 2.0474
46 1 9.3472 -1.5940 3.9718
47 1 8.3808 -3.0681 6.1259
48 1 3.2441 -0.9371 0.4036
49 1 3.1257 -0.4331 2.1196
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001235515845.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:26:40
Heat of formation + Delta-G solvation = -26.247989 kcal
Electronic energy + Delta-G solvation = -27520.011027 eV
Core-core repulsion = 24025.097681 eV
Total energy + Delta-G solvation = -3494.913345 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-40.40179 -37.95715 -37.08242 -35.16885 -33.51428 -31.83167 -31.00959 -29.50472
-29.08246 -26.70650 -26.59987 -25.56805 -24.54850 -22.24887 -21.86541 -20.89404
-20.69743 -19.30906 -18.12873 -17.03586 -16.80906 -16.19495 -15.67192 -15.25083
-15.01746 -14.51412 -14.18449 -14.08809 -13.97210 -13.70978 -13.31215 -13.08173
-12.76438 -12.60833 -12.42418 -12.29973 -12.00106 -11.60436 -11.51161 -11.43246
-11.19756 -11.13738 -11.02864 -10.90233 -10.87491 -10.56775 -10.42249 -10.38959
-10.21914 -10.08681 -9.91955 -9.42469 -9.38823 -9.16806 -9.04318 -7.71857
-7.24956 -7.19815 -6.63672 -4.20512 2.87400 3.06778 3.14321 3.20338
3.34305 3.71123 4.03812 4.53306 4.56380 4.73591 4.78541 4.93661
5.01836 5.12528 5.16204 5.22317 5.25949 5.39722 5.52052 5.54691
5.60100 5.66939 5.81724 5.84099 5.89049 5.95088 6.07417 6.10655
6.11887 6.19223 6.24426 6.31247 6.34020 6.38744 6.51458 6.54453
6.59342 6.63902 6.66938 6.96871 7.15716 7.22156 7.37590 7.48193
7.56527 7.73471 7.83769 8.04350 8.19123 8.26062 8.43921 8.79479
9.05991 9.13143 10.31031
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.013548 B = 0.004419 C = 0.003618
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2066.295988 B = 6335.083883 C = 7736.262278
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.380 6.380
3 C 0.110 3.890
4 H 0.049 0.951
5 C -0.139 4.139
6 C -0.113 4.113
7 C -0.110 4.110
8 C -0.078 4.078
9 H 0.072 0.928
10 C 0.045 3.955
11 N -0.495 5.495
12 C 0.116 3.884
13 C -0.191 4.191
14 C -0.086 4.086
15 C -0.246 4.246
16 C -0.107 4.107
17 C -0.164 4.164
18 C 0.131 3.869
19 C -0.445 4.445
20 H 0.089 0.911
21 C 0.073 3.927
22 N -0.799 5.799
23 Si 0.903 3.097
24 H -0.272 1.272
25 H -0.279 1.279
26 H -0.260 1.260
27 C 0.048 3.952
28 C -0.083 4.083
29 H 0.069 0.931
30 H 0.038 0.962
31 H 0.037 0.963
32 H 0.082 0.918
33 H 0.066 0.934
34 H 0.065 0.935
35 H 0.069 0.931
36 H 0.061 0.939
37 H 0.060 0.940
38 H 0.063 0.937
39 H 0.080 0.920
40 H 0.036 0.964
41 H 0.016 0.984
42 H 0.075 0.925
43 H 0.080 0.920
44 H 0.082 0.918
45 H 0.083 0.917
46 H 0.115 0.885
47 H 0.277 0.723
48 H 0.055 0.945
49 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.169 8.099 -9.480 17.423
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 O -0.299 6.299
3 C 0.052 3.948
4 H 0.067 0.933
5 C -0.177 4.177
6 C -0.150 4.150
7 C -0.148 4.148
8 C -0.097 4.097
9 H 0.091 0.909
10 C -0.083 4.083
11 N -0.218 5.218
12 C -0.010 4.010
13 C -0.193 4.193
14 C -0.105 4.105
15 C -0.266 4.266
16 C -0.126 4.126
17 C -0.184 4.184
18 C 0.128 3.872
19 C -0.475 4.475
20 H 0.107 0.893
21 C -0.143 4.143
22 N -0.425 5.425
23 Si 0.728 3.272
24 H -0.197 1.197
25 H -0.204 1.204
26 H -0.184 1.184
27 C -0.080 4.080
28 C -0.102 4.102
29 H 0.088 0.912
30 H 0.057 0.943
31 H 0.055 0.945
32 H 0.101 0.899
33 H 0.084 0.916
34 H 0.084 0.916
35 H 0.087 0.913
36 H 0.079 0.921
37 H 0.079 0.921
38 H 0.082 0.918
39 H 0.098 0.902
40 H 0.055 0.945
41 H 0.034 0.966
42 H 0.093 0.907
43 H 0.099 0.901
44 H 0.100 0.900
45 H 0.102 0.898
46 H 0.133 0.867
47 H 0.088 0.912
48 H 0.073 0.927
49 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -11.743 8.002 -8.735 16.680
hybrid contribution -0.777 -0.012 0.038 0.778
sum -12.520 7.990 -8.697 17.212
Atomic orbital electron populations
1.22762 0.82216 1.02456 0.99488 1.88118 1.18645 1.28033 1.95087
1.20897 0.94536 0.84240 0.95121 0.93310 1.21764 0.98992 1.00713
0.96201 1.21287 0.94419 1.01079 0.98248 1.21010 0.99205 0.99385
0.95229 1.20821 0.94627 0.98728 0.95548 0.90926 1.23341 0.98945
0.93699 0.92314 1.65897 1.04848 1.13108 1.37928 1.20751 0.94303
0.87969 0.98025 1.19458 0.92307 1.13756 0.93730 1.20346 0.93396
1.00796 0.95946 1.20269 0.94345 1.16434 0.95549 1.20654 0.97251
1.01278 0.93431 1.21330 0.93519 1.05994 0.97530 1.17365 0.91890
0.86873 0.91112 1.19716 1.01957 1.34347 0.91462 0.89263 1.25955
0.94667 0.92880 1.00832 1.69845 1.23274 1.23532 1.25808 0.86404
0.79890 0.80472 0.80478 1.19726 1.20409 1.18410 1.23097 0.89683
0.94811 1.00366 1.20497 0.92274 0.99024 0.98393 0.91214 0.94293
0.94493 0.89907 0.91579 0.91600 0.91253 0.92075 0.92125 0.91827
0.90195 0.94539 0.96604 0.90656 0.90141 0.89970 0.89840 0.86674
0.91185 0.92734 0.90846
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.25 10.66 101.05 1.08 1.33 16
2 O -0.38 -4.78 7.66 -35.23 -0.27 -5.05 16
3 C 0.11 1.27 2.80 -29.52 -0.08 1.19 16
4 H 0.05 0.51 7.70 -51.93 -0.40 0.11 16
5 C -0.14 -1.39 5.47 -27.68 -0.15 -1.54 16
6 C -0.11 -1.21 5.97 -27.20 -0.16 -1.37 16
7 C -0.11 -1.24 5.17 -28.20 -0.15 -1.39 16
8 C -0.08 -1.08 2.97 -91.63 -0.27 -1.35 16
9 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16
10 C 0.05 0.77 5.09 -1.76 -0.01 0.76 16
11 N -0.49 -9.51 5.13 -230.20 -1.18 -10.69 16
12 C 0.12 2.47 4.15 -4.98 -0.02 2.45 16
13 C -0.19 -4.59 5.00 -103.91 -0.52 -5.11 16
14 C -0.09 -1.97 9.42 -39.66 -0.37 -2.34 16
15 C -0.25 -5.70 10.05 -39.29 -0.39 -6.10 16
16 C -0.11 -2.61 10.02 -39.66 -0.40 -3.01 16
17 C -0.16 -4.37 8.68 -38.88 -0.34 -4.71 16
18 C 0.13 3.47 5.56 -106.83 -0.59 2.88 16
19 C -0.45 -11.77 8.18 -37.74 -0.31 -12.08 16
20 H 0.09 2.33 6.85 -52.48 -0.36 1.97 16
21 C 0.07 1.87 5.16 -17.34 -0.09 1.78 16
22 N -0.80 -20.97 10.97 55.55 0.61 -20.36 16
23 Si 0.90 19.21 29.59 -169.99 -5.03 14.18 16
24 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16
25 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16
26 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16
27 C 0.05 0.80 5.16 -1.73 -0.01 0.79 16
28 C -0.08 -1.14 2.77 -92.43 -0.26 -1.40 16
29 H 0.07 0.97 8.08 -51.92 -0.42 0.55 16
30 H 0.04 0.33 8.04 -51.93 -0.42 -0.09 16
31 H 0.04 0.29 7.13 -51.92 -0.37 -0.08 16
32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16
33 H 0.07 0.62 6.87 -51.93 -0.36 0.27 16
34 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16
35 H 0.07 0.88 8.11 -51.93 -0.42 0.46 16
36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16
37 H 0.06 0.60 8.07 -51.92 -0.42 0.18 16
38 H 0.06 0.72 7.83 -51.93 -0.41 0.31 16
39 H 0.08 1.50 8.12 -51.93 -0.42 1.08 16
40 H 0.04 0.61 7.64 -51.93 -0.40 0.22 16
41 H 0.02 0.32 7.76 -51.93 -0.40 -0.08 16
42 H 0.08 1.69 7.34 -51.93 -0.38 1.31 16
43 H 0.08 1.66 8.03 -52.48 -0.42 1.24 16
44 H 0.08 1.70 8.06 -52.48 -0.42 1.28 16
45 H 0.08 1.83 8.06 -52.49 -0.42 1.41 16
46 H 0.12 3.17 6.21 -52.49 -0.33 2.84 16
47 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16
48 H 0.05 0.93 6.60 -51.93 -0.34 0.58 16
49 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16
LS Contribution 372.39 15.07 5.61 5.61
Total: -1.00 -27.85 372.39 -11.66 -39.51
By element:
Atomic # 1 Polarization: 14.38 SS G_CDS: -8.35 Total: 6.03 kcal
Atomic # 6 Polarization: -26.18 SS G_CDS: -3.05 Total: -29.23 kcal
Atomic # 7 Polarization: -30.48 SS G_CDS: -0.57 Total: -31.05 kcal
Atomic # 8 Polarization: -4.78 SS G_CDS: -0.27 Total: -5.05 kcal
Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal
Total LS contribution 5.61 Total: 5.61 kcal
Total: -27.85 -11.66 -39.51 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001235515845.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.267 kcal
(2) G-P(sol) polarization free energy of solvation -27.855 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.588 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.660 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.515 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.248 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds