Wall clock time and date at job start Tue Mar 31 2020 12:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00152 * 2 1 4 4 H 1.09001 * 107.72071 * 33.75696 * 3 2 1 5 5 C 1.51144 * 107.86750 * 277.52904 * 3 2 1 6 6 C 1.52975 * 110.38088 * 269.84283 * 5 3 2 7 7 C 1.52099 * 106.61832 * 294.63145 * 6 5 3 8 8 C 1.50988 * 111.29937 * 65.51136 * 7 6 5 9 9 H 1.08997 * 108.37973 * 206.40077 * 8 7 6 10 10 C 1.54785 * 109.94301 * 88.35223 * 8 7 6 11 11 N 1.48932 * 103.79635 * 209.03026 * 10 8 7 12 12 C 1.46903 * 111.00042 * 159.91481 * 11 10 8 13 13 C 1.50698 * 109.47042 * 69.87573 * 12 11 10 14 14 C 1.37646 * 120.12386 * 260.29781 * 13 12 11 15 15 C 1.38616 * 120.24310 * 180.25748 * 14 13 12 16 16 C 1.38649 * 120.50344 * 359.43812 * 15 14 13 17 17 C 1.37594 * 120.24938 * 0.28140 * 16 15 14 18 18 C 1.40693 * 120.13452 * 79.99794 * 13 12 11 19 19 C 1.41399 * 120.23790 * 0.04316 * 18 13 12 20 20 H 1.08003 * 120.00245 * 334.16151 * 19 18 13 21 21 C 1.39949 * 119.99747 * 154.15963 * 19 18 13 22 22 N 1.30823 * 119.99950 * 343.51436 * 21 19 18 23 23 Si 1.86797 * 120.00001 * 163.51867 * 21 19 18 24 24 H 1.48498 * 109.47372 * 89.99910 * 23 21 19 25 25 H 1.48503 * 109.47184 * 210.00198 * 23 21 19 26 26 H 1.48504 * 109.47023 * 329.99598 * 23 21 19 27 27 C 1.48905 * 103.58536 * 40.72496 * 11 10 8 28 28 C 1.49242 * 107.89934 * 149.99960 * 3 2 1 29 29 H 1.09007 * 106.89710 * 246.32967 * 28 3 2 30 30 H 1.08996 * 109.47421 * 300.00245 * 1 2 3 31 31 H 1.09011 * 109.46806 * 60.00028 * 1 2 3 32 32 H 1.08997 * 109.47315 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.32340 * 30.12070 * 5 3 2 34 34 H 1.09003 * 109.32344 * 149.57048 * 5 3 2 35 35 H 1.09002 * 109.90729 * 54.19865 * 6 5 3 36 36 H 1.08995 * 109.91594 * 175.35449 * 6 5 3 37 37 H 1.09009 * 110.12256 * 304.26917 * 7 6 5 38 38 H 1.08996 * 107.83753 * 185.26350 * 7 6 5 39 39 H 1.09002 * 110.56299 * 90.45515 * 10 8 7 40 40 H 1.08999 * 110.56090 * 327.60749 * 10 8 7 41 41 H 1.09001 * 109.46965 * 309.87091 * 12 11 10 42 42 H 1.08995 * 109.46809 * 189.87340 * 12 11 10 43 43 H 1.08004 * 119.87797 * 359.97438 * 14 13 12 44 44 H 1.08003 * 119.74442 * 179.72437 * 15 14 13 45 45 H 1.08001 * 119.87630 * 180.25673 * 16 15 14 46 46 H 1.08002 * 120.13079 * 180.02562 * 17 16 15 47 47 H 0.97002 * 119.99741 * 179.97438 * 22 21 19 48 48 H 1.09001 * 110.54807 * 78.00539 * 27 11 10 49 49 H 1.09005 * 110.54895 * 200.81413 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3566 1.9597 0.5770 5 6 2.0267 1.8057 -1.4261 6 6 3.3328 1.4072 -2.1155 7 6 4.4481 2.1523 -1.3984 8 6 4.5891 1.6854 0.0306 9 1 5.0159 2.4988 0.6174 10 6 5.5584 0.4805 0.0991 11 7 5.0792 -0.2942 1.2774 12 6 5.5546 -1.6831 1.2230 13 6 7.0428 -1.7142 1.4584 14 6 7.9085 -1.8198 0.3935 15 6 9.2776 -1.8541 0.6075 16 6 9.7914 -1.7709 1.8926 17 6 8.9449 -1.6591 2.9716 18 6 7.5529 -1.6292 2.7668 19 6 6.6733 -1.5149 3.8680 20 1 5.6920 -1.0844 3.7330 21 6 7.0742 -1.9598 5.1329 22 7 8.1026 -2.7600 5.2491 23 14 6.1409 -1.4112 6.6551 24 1 5.0456 -2.3732 6.9378 25 1 7.0685 -1.3627 7.8138 26 1 5.5668 -0.0613 6.4239 27 6 3.5963 -0.2325 1.1571 28 6 3.3204 1.2242 0.7101 29 1 3.2224 1.8106 1.6238 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.1860 1.3742 -1.9695 34 1 1.9347 2.8919 -1.4284 35 1 3.4827 0.3307 -2.0328 36 1 3.3027 1.6991 -3.1652 37 1 4.2493 3.2240 -1.4072 38 1 5.3777 1.9567 -1.9327 39 1 6.5820 0.8210 0.2554 40 1 5.4877 -0.1197 -0.8080 41 1 5.3328 -2.1049 0.2427 42 1 5.0527 -2.2692 1.9928 43 1 7.5195 -1.8808 -0.6122 44 1 9.9494 -1.9416 -0.2336 45 1 10.8600 -1.7944 2.0474 46 1 9.3472 -1.5940 3.9718 47 1 8.3808 -3.0681 6.1259 48 1 3.2441 -0.9371 0.4036 49 1 3.1257 -0.4331 2.1196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235515845.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:37 Heat of formation + Delta-G solvation = -40.205687 kcal Electronic energy + Delta-G solvation = -27520.616278 eV Core-core repulsion = 24025.097681 eV Total energy + Delta-G solvation = -3495.518596 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.49762 -39.60080 -38.34568 -36.33323 -35.44594 -33.27149 -32.02321 -31.35215 -30.69548 -27.85207 -27.50625 -27.24445 -26.21441 -23.42861 -22.94003 -22.66798 -22.12395 -21.11076 -19.14180 -18.94391 -17.83139 -17.26734 -17.07387 -16.72152 -16.26588 -16.09020 -15.67024 -15.52871 -15.20438 -14.90316 -14.70414 -14.40794 -14.28184 -13.97481 -13.62334 -13.51328 -13.31755 -13.24135 -12.87337 -12.83144 -12.71065 -12.61695 -12.36712 -12.31951 -12.22816 -12.08972 -12.02879 -11.64274 -11.40274 -11.27783 -11.10280 -11.08229 -10.97245 -10.89242 -10.29406 -9.29877 -9.18942 -9.06763 -8.55264 -6.21084 1.02714 1.15452 1.38432 1.49861 1.56893 2.24599 2.80944 2.86427 3.26390 3.54352 3.70658 3.82667 3.96640 4.11002 4.12783 4.21777 4.34591 4.37285 4.41084 4.49257 4.51224 4.55475 4.58550 4.65368 4.66538 4.74279 4.79579 4.84621 4.86723 4.90362 4.96881 5.03501 5.07549 5.12881 5.15458 5.21956 5.26918 5.34775 5.41895 5.42234 5.48446 5.51747 5.57615 5.81983 5.99629 6.19418 6.19937 6.26844 6.33659 6.39459 6.50696 6.81579 7.08718 7.16567 8.41502 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013548 B = 0.004419 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.295988 B = 6335.083883 C = 7736.262278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.406 6.406 3 C 0.109 3.891 4 H 0.063 0.937 5 C -0.134 4.134 6 C -0.111 4.111 7 C -0.106 4.106 8 C -0.070 4.070 9 H 0.069 0.931 10 C 0.048 3.952 11 N -0.515 5.515 12 C 0.128 3.872 13 C -0.195 4.195 14 C -0.090 4.090 15 C -0.244 4.244 16 C -0.114 4.114 17 C -0.193 4.193 18 C 0.101 3.899 19 C -0.471 4.471 20 H 0.082 0.918 21 C 0.033 3.967 22 N -0.831 5.831 23 Si 0.972 3.028 24 H -0.264 1.264 25 H -0.269 1.269 26 H -0.262 1.262 27 C 0.054 3.946 28 C -0.075 4.075 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.038 0.962 41 H 0.025 0.975 42 H 0.054 0.946 43 H 0.106 0.894 44 H 0.113 0.887 45 H 0.104 0.896 46 H 0.096 0.904 47 H 0.284 0.716 48 H 0.050 0.950 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.671 9.560 -11.017 19.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.326 6.326 3 C 0.051 3.949 4 H 0.082 0.918 5 C -0.172 4.172 6 C -0.148 4.148 7 C -0.144 4.144 8 C -0.090 4.090 9 H 0.088 0.912 10 C -0.080 4.080 11 N -0.239 5.239 12 C 0.000 4.000 13 C -0.197 4.197 14 C -0.109 4.109 15 C -0.263 4.263 16 C -0.133 4.133 17 C -0.213 4.213 18 C 0.098 3.902 19 C -0.501 4.501 20 H 0.100 0.900 21 C -0.180 4.180 22 N -0.457 5.457 23 Si 0.793 3.207 24 H -0.189 1.189 25 H -0.194 1.194 26 H -0.186 1.186 27 C -0.074 4.074 28 C -0.094 4.094 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.043 0.957 42 H 0.072 0.928 43 H 0.124 0.876 44 H 0.131 0.869 45 H 0.122 0.878 46 H 0.114 0.886 47 H 0.094 0.906 48 H 0.069 0.931 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.247 9.464 -10.287 19.258 hybrid contribution -0.270 -0.511 0.422 0.716 sum -13.517 8.953 -9.865 18.979 Atomic orbital electron populations 1.22915 0.80545 1.03216 1.00627 1.88069 1.20537 1.28688 1.95324 1.20916 0.93152 0.84378 0.96414 0.91843 1.21750 0.98788 1.01903 0.94742 1.21264 0.94589 0.99502 0.99463 1.20995 0.99594 1.00663 0.93129 1.20794 0.93604 0.96982 0.97578 0.91235 1.23300 0.98606 0.94724 0.91328 1.65783 1.06744 1.11849 1.39520 1.20538 0.92561 0.89270 0.97609 1.19809 0.94058 1.12513 0.93327 1.20653 0.93441 0.99929 0.96835 1.20653 0.94995 1.14686 0.95946 1.20923 0.98208 1.00689 0.93470 1.21311 0.94128 1.08372 0.97496 1.17702 0.92230 0.87831 0.92407 1.19818 1.01945 1.35695 0.92638 0.89973 1.26714 0.95531 0.92430 1.03371 1.69902 1.24665 1.24363 1.26810 0.85362 0.78726 0.79767 0.76800 1.18907 1.19357 1.18596 1.23023 0.87712 0.96951 0.99673 1.20487 0.93631 0.96543 0.98761 0.91592 0.93620 0.92802 0.89475 0.90669 0.89607 0.93600 0.90105 0.89913 0.91942 0.92448 0.94381 0.95676 0.92762 0.87566 0.86892 0.87764 0.88555 0.90587 0.93139 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.66 113.37 1.21 1.59 16 2 O -0.41 -9.63 7.66 -148.98 -1.14 -10.77 16 3 C 0.11 2.29 2.80 28.79 0.08 2.37 16 4 H 0.06 1.15 7.70 -2.39 -0.02 1.13 16 5 C -0.13 -2.23 5.47 29.98 0.16 -2.07 16 6 C -0.11 -2.07 5.97 30.29 0.18 -1.89 16 7 C -0.11 -2.12 5.17 29.64 0.15 -1.97 16 8 C -0.07 -1.86 2.97 -11.45 -0.03 -1.90 16 9 H 0.07 1.87 8.13 -2.39 -0.02 1.85 16 10 C 0.05 1.65 5.09 86.52 0.44 2.09 16 11 N -0.52 -20.28 5.13 -882.22 -4.53 -24.81 16 12 C 0.13 5.57 4.15 85.56 0.36 5.93 16 13 C -0.20 -9.61 5.00 -19.40 -0.10 -9.70 16 14 C -0.09 -4.06 9.42 22.22 0.21 -3.85 16 15 C -0.24 -10.98 10.05 22.46 0.23 -10.75 16 16 C -0.11 -5.58 10.02 22.22 0.22 -5.35 16 17 C -0.19 -10.64 8.68 22.73 0.20 -10.45 16 18 C 0.10 5.58 5.56 -21.29 -0.12 5.46 16 19 C -0.47 -25.98 8.18 23.46 0.19 -25.79 16 20 H 0.08 4.50 6.85 -2.91 -0.02 4.48 16 21 C 0.03 1.74 5.16 85.26 0.44 2.18 16 22 N -0.83 -45.09 10.97 21.83 0.24 -44.85 16 23 Si 0.97 40.33 29.59 68.60 2.03 42.36 16 24 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 25 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 26 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 27 C 0.05 1.81 5.16 86.55 0.45 2.25 16 28 C -0.08 -1.99 2.77 -11.97 -0.03 -2.03 16 29 H 0.07 1.78 8.08 -2.38 -0.02 1.76 16 30 H 0.05 0.68 8.04 -2.39 -0.02 0.66 16 31 H 0.05 0.70 7.13 -2.38 -0.02 0.68 16 32 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.14 6.87 -2.39 -0.02 1.13 16 34 H 0.09 1.12 8.05 -2.39 -0.02 1.10 16 35 H 0.05 1.08 8.11 -2.39 -0.02 1.06 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.34 8.07 -2.38 -0.02 1.32 16 38 H 0.06 1.28 7.83 -2.39 -0.02 1.26 16 39 H 0.06 2.18 8.12 -2.39 -0.02 2.16 16 40 H 0.04 1.27 7.64 -2.39 -0.02 1.25 16 41 H 0.03 1.03 7.76 -2.39 -0.02 1.01 16 42 H 0.05 2.55 7.34 -2.39 -0.02 2.54 16 43 H 0.11 4.20 8.03 -2.91 -0.02 4.18 16 44 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 45 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 46 H 0.10 5.56 6.21 -2.91 -0.02 5.54 16 47 H 0.28 14.03 8.30 -92.71 -0.77 13.26 16 48 H 0.05 1.73 6.60 -2.39 -0.02 1.72 16 49 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -62.04 372.39 1.74 -60.30 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.91 Total: 31.66 kcal Atomic # 6 Polarization: -58.12 SS G_CDS: 4.23 Total: -53.89 kcal Atomic # 7 Polarization: -65.37 SS G_CDS: -4.29 Total: -69.66 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -1.14 Total: -10.77 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -62.04 1.74 -60.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235515845.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.092 kcal (2) G-P(sol) polarization free energy of solvation -62.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds