Wall clock time and date at job start Tue Mar 31 2020 11:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47230 * 2 1 4 4 Si 1.63094 * 114.00095 * 180.02562 * 3 2 1 5 5 C 1.86299 * 109.47178 * 299.99953 * 4 3 2 6 6 C 1.86301 * 109.47166 * 179.97438 * 4 3 2 7 7 C 1.53000 * 109.46997 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 4 9 9 N 1.46902 * 109.46901 * 180.02562 * 8 7 6 10 10 C 1.46907 * 110.99665 * 179.97438 * 9 8 7 11 11 H 1.09000 * 110.43744 * 34.29783 * 10 9 8 12 12 C 1.54270 * 110.48303 * 271.75424 * 10 9 8 13 13 C 1.53877 * 106.59702 * 217.71286 * 12 10 9 14 14 C 1.54267 * 106.59662 * 0.02562 * 13 12 10 15 15 C 1.50697 * 110.48459 * 142.42329 * 14 13 12 16 16 N 1.27946 * 120.00073 * 266.44574 * 15 14 13 17 17 Si 1.86797 * 120.00376 * 86.45402 * 15 14 13 18 18 H 1.48495 * 109.47817 * 89.99683 * 17 15 14 19 19 H 1.48501 * 109.47183 * 210.00220 * 17 15 14 20 20 H 1.48503 * 109.46973 * 329.99584 * 17 15 14 21 21 C 1.54888 * 110.48479 * 156.83887 * 10 9 8 22 22 O 1.63108 * 109.47095 * 59.99886 * 4 3 2 23 23 C 1.42899 * 113.99928 * 60.00209 * 22 4 3 24 24 C 1.52999 * 109.46889 * 179.97438 * 23 22 4 25 25 H 1.08999 * 109.47384 * 299.99902 * 1 2 3 26 26 H 1.09001 * 109.47081 * 60.00210 * 1 2 3 27 27 H 1.09008 * 109.47274 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46950 * 239.99785 * 2 1 3 29 29 H 1.08998 * 109.47349 * 120.00228 * 2 1 3 30 30 H 1.09002 * 109.46890 * 300.00041 * 5 4 3 31 31 H 1.09000 * 109.47207 * 59.99895 * 5 4 3 32 32 H 1.08996 * 109.47367 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47148 * 59.99808 * 6 4 3 34 34 H 1.09001 * 109.46900 * 299.99961 * 6 4 3 35 35 H 1.09001 * 109.47194 * 299.99695 * 7 6 4 36 36 H 1.08992 * 109.47399 * 59.99867 * 7 6 4 37 37 H 1.09001 * 109.47109 * 299.99380 * 8 7 6 38 38 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 39 39 H 1.00898 * 111.00229 * 56.04458 * 9 8 7 40 40 H 1.08995 * 110.03542 * 336.99477 * 12 10 9 41 41 H 1.08999 * 110.03007 * 98.38513 * 12 10 9 42 42 H 1.08996 * 110.03398 * 119.28539 * 13 12 10 43 43 H 1.09002 * 110.03060 * 240.67230 * 13 12 10 44 44 H 1.09009 * 110.48398 * 264.92900 * 14 13 12 45 45 H 0.97000 * 120.00446 * 179.97438 * 16 15 14 46 46 H 1.09000 * 110.75737 * 274.93180 * 21 10 9 47 47 H 1.08999 * 110.75430 * 38.30345 * 21 10 9 48 48 H 1.08997 * 109.47171 * 299.99831 * 23 22 4 49 49 H 1.08999 * 109.47156 * 59.99587 * 23 22 4 50 50 H 1.09001 * 109.47296 * 179.97438 * 24 23 22 51 51 H 1.08997 * 109.47286 * 300.00017 * 24 23 22 52 52 H 1.08999 * 109.47350 * 59.99962 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 14 3.6322 1.4761 -0.0007 5 6 4.3212 0.6494 1.5201 6 6 4.1126 3.2761 -0.0014 7 6 5.6378 3.3968 -0.0027 8 6 6.0323 4.8751 -0.0026 9 7 7.4967 4.9911 -0.0044 10 6 7.9132 6.3999 -0.0051 11 1 7.2127 7.0041 0.5713 12 6 8.0220 6.9300 -1.4497 13 6 9.2400 7.8699 -1.4824 14 6 9.8291 7.8775 -0.0567 15 6 11.3343 7.9272 -0.1083 16 7 12.0119 6.8425 -0.0706 17 14 12.2111 9.5723 -0.2271 18 1 12.4889 10.0852 1.1385 19 1 13.4907 9.3994 -0.9607 20 1 11.3509 10.5403 -0.9540 21 6 9.3469 6.5415 0.5638 22 8 4.2343 0.7527 -1.3328 23 6 3.7664 1.3140 -2.5608 24 6 4.3931 0.5622 -3.7367 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.9188 1.1328 2.4103 31 1 4.0402 -0.4037 1.5200 32 1 5.4078 0.7350 1.5194 33 1 3.7101 3.7599 0.8886 34 1 3.7094 3.7593 -0.8914 35 1 6.0413 2.9135 0.8871 36 1 6.0398 2.9131 -0.8928 37 1 5.6288 5.3589 -0.8922 38 1 5.6302 5.3585 0.8878 39 1 7.8977 4.4954 -0.7865 40 1 8.1715 6.1010 -2.1414 41 1 7.1186 7.4791 -1.7149 42 1 9.9805 7.4970 -2.1900 43 1 8.9280 8.8756 -1.7641 44 1 9.4397 8.7219 0.5124 45 1 12.9807 6.8744 -0.1042 46 1 9.3264 6.6034 1.6519 47 1 9.9764 5.7149 0.2347 48 1 2.6811 1.2265 -2.6100 49 1 4.0487 2.3657 -2.6104 50 1 4.0359 0.9900 -4.6734 51 1 5.4784 0.6501 -3.6872 52 1 4.1112 -0.4896 -3.6872 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254642319.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:11 Heat of formation + Delta-G solvation = -149.506599 kcal Electronic energy + Delta-G solvation = -24820.584923 eV Core-core repulsion = 21362.568472 eV Total energy + Delta-G solvation = -3458.016451 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.210 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -39.96643 -38.30991 -37.86672 -37.17949 -35.39291 -32.87296 -31.56588 -31.54373 -29.57934 -28.92310 -28.51961 -25.30196 -23.63696 -23.58824 -23.15261 -22.20970 -21.13398 -19.94207 -18.36569 -17.66897 -17.52269 -17.06397 -16.63104 -16.44835 -16.26137 -16.00240 -15.34679 -15.08275 -14.84984 -14.75673 -14.49180 -14.34652 -14.12994 -13.63779 -13.53827 -13.41381 -13.35623 -13.30748 -13.16307 -13.04953 -12.95312 -12.74957 -12.61690 -12.39534 -12.35507 -12.27375 -12.03349 -11.99046 -11.76278 -11.61332 -11.57126 -11.44855 -11.33675 -11.16591 -11.11886 -10.68888 -10.29566 -9.74222 -9.21099 0.84050 1.07749 1.26833 1.37557 1.71484 1.83355 2.01559 2.06427 2.27904 3.26273 3.46423 3.73792 3.98051 4.07193 4.13300 4.14487 4.17844 4.23418 4.26261 4.35610 4.42358 4.43433 4.47350 4.49743 4.57112 4.59912 4.61579 4.63370 4.70274 4.72597 4.74069 4.78476 4.79981 4.93383 4.95979 5.03178 5.03504 5.06565 5.09720 5.18029 5.21480 5.26246 5.26775 5.32001 5.40333 5.42803 5.51241 5.55928 5.64059 5.74835 6.24495 6.54038 6.94642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.082 3.918 3 O -0.657 6.657 4 Si 1.467 2.533 5 C -0.523 4.523 6 C -0.482 4.482 7 C -0.104 4.104 8 C 0.060 3.940 9 N -0.684 5.684 10 C 0.080 3.920 11 H 0.081 0.919 12 C -0.151 4.151 13 C -0.108 4.108 14 C -0.069 4.069 15 C 0.004 3.996 16 N -0.626 5.626 17 Si 0.925 3.075 18 H -0.239 1.239 19 H -0.248 1.248 20 H -0.234 1.234 21 C -0.096 4.096 22 O -0.653 6.653 23 C 0.083 3.917 24 C -0.156 4.156 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.027 0.973 38 H 0.070 0.930 39 H 0.342 0.658 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.335 0.665 46 H 0.066 0.934 47 H 0.091 0.909 48 H 0.054 0.946 49 H 0.053 0.947 50 H 0.066 0.934 51 H 0.063 0.937 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.524 1.084 -1.874 2.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.007 3.993 3 O -0.617 6.617 4 Si 1.551 2.449 5 C -0.623 4.623 6 C -0.562 4.562 7 C -0.141 4.141 8 C -0.069 4.069 9 N -0.314 5.314 10 C -0.030 4.030 11 H 0.099 0.901 12 C -0.190 4.190 13 C -0.147 4.147 14 C -0.089 4.089 15 C -0.246 4.246 16 N -0.239 5.239 17 Si 0.741 3.259 18 H -0.163 1.163 19 H -0.171 1.171 20 H -0.156 1.156 21 C -0.134 4.134 22 O -0.614 6.614 23 C 0.008 3.992 24 C -0.214 4.214 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.045 0.955 38 H 0.089 0.911 39 H 0.160 0.840 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.110 0.890 45 H 0.152 0.848 46 H 0.085 0.915 47 H 0.110 0.890 48 H 0.072 0.928 49 H 0.071 0.929 50 H 0.085 0.915 51 H 0.083 0.917 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.358 0.731 -1.271 1.998 hybrid contribution 0.591 0.965 -0.566 1.265 sum -0.767 1.696 -1.836 2.614 Atomic orbital electron populations 1.21878 0.94144 1.02096 1.03273 1.21930 0.96220 0.80645 1.00505 1.85466 1.53963 1.31507 1.90803 0.74921 0.49762 0.61626 0.58606 1.27121 1.08326 1.08603 1.18296 1.27096 0.99771 1.24101 1.05205 1.21040 0.94192 0.96212 1.02691 1.22063 0.87571 0.96851 1.00385 1.60541 1.08867 1.11879 1.50125 1.22512 0.97408 0.88549 0.94559 0.90085 1.22868 0.98197 0.99691 0.98270 1.22012 0.97090 0.99936 0.95663 1.21302 0.90105 0.99997 0.97458 1.30108 0.99927 1.02166 0.92365 1.68159 1.13806 1.32802 1.09106 0.85831 0.80257 0.77080 0.82683 1.16258 1.17147 1.15583 1.22453 0.94501 0.96734 0.99749 1.85483 1.76967 1.70838 1.28088 1.21906 0.97493 0.96222 0.83572 1.21872 1.01947 1.01293 0.96254 0.91739 0.91825 0.91355 0.92657 0.92755 0.90442 0.91230 0.90316 0.89947 0.90705 0.90832 0.91903 0.95466 0.91146 0.83954 0.91647 0.91814 0.91387 0.91269 0.89012 0.84847 0.91475 0.89013 0.92760 0.92853 0.91463 0.91742 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.08 10.28 37.16 0.38 0.46 16 2 C 0.08 0.01 5.84 37.16 0.22 0.22 16 3 O -0.66 -0.74 8.56 -53.57 -0.46 -1.20 16 4 Si 1.47 -0.19 10.69 -169.99 -1.82 -2.00 16 5 C -0.52 -0.26 8.50 101.05 0.86 0.60 16 6 C -0.48 0.08 4.30 37.16 0.16 0.24 16 7 C -0.10 -0.02 4.85 -26.73 -0.13 -0.15 16 8 C 0.06 0.03 5.54 -3.82 -0.02 0.01 16 9 N -0.68 -0.56 6.35 -104.97 -0.67 -1.23 16 10 C 0.08 0.02 3.17 -66.05 -0.21 -0.19 16 11 H 0.08 0.02 7.85 -51.93 -0.41 -0.38 16 12 C -0.15 0.09 6.48 -25.61 -0.17 -0.08 16 13 C -0.11 0.09 6.33 -25.61 -0.16 -0.07 16 14 C -0.07 0.03 2.79 -90.05 -0.25 -0.22 16 15 C 0.00 0.00 4.76 -13.90 -0.07 -0.07 16 16 N -0.63 -0.72 12.38 56.23 0.70 -0.02 16 17 Si 0.93 -0.96 29.55 -169.99 -5.02 -5.98 16 18 H -0.24 0.03 7.11 56.52 0.40 0.44 16 19 H -0.25 0.02 7.11 56.52 0.40 0.42 16 20 H -0.23 0.20 7.11 56.52 0.40 0.60 16 21 C -0.10 -0.08 5.82 -24.68 -0.14 -0.22 16 22 O -0.65 -0.62 8.56 -53.57 -0.46 -1.08 16 23 C 0.08 -0.02 5.84 37.16 0.22 0.20 16 24 C -0.16 0.10 10.28 37.16 0.38 0.48 16 25 H 0.06 -0.01 8.14 -51.93 -0.42 -0.44 16 26 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 27 H 0.07 -0.12 8.14 -51.92 -0.42 -0.55 16 28 H 0.06 -0.04 7.83 -51.93 -0.41 -0.45 16 29 H 0.05 -0.05 7.21 -51.93 -0.37 -0.43 16 30 H 0.08 0.02 7.96 -51.93 -0.41 -0.39 16 31 H 0.07 0.03 7.48 -51.93 -0.39 -0.36 16 32 H 0.08 0.05 7.79 -51.93 -0.40 -0.35 16 33 H 0.08 -0.01 7.96 -51.93 -0.41 -0.42 16 34 H 0.07 -0.03 7.48 -51.93 -0.39 -0.41 16 35 H 0.07 0.04 7.80 -51.93 -0.40 -0.36 16 36 H 0.06 0.00 7.96 -51.93 -0.41 -0.42 16 37 H 0.03 0.01 8.14 -51.93 -0.42 -0.41 16 38 H 0.07 0.07 8.08 -51.93 -0.42 -0.35 16 39 H 0.34 0.13 8.11 -39.29 -0.32 -0.19 16 40 H 0.06 -0.02 7.55 -51.93 -0.39 -0.41 16 41 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 42 H 0.07 -0.02 7.83 -51.93 -0.41 -0.43 16 43 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 44 H 0.09 -0.18 7.91 -51.92 -0.41 -0.59 16 45 H 0.33 -0.10 8.23 -40.82 -0.34 -0.43 16 46 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 47 H 0.09 0.23 7.15 -51.93 -0.37 -0.14 16 48 H 0.05 -0.05 7.83 -51.93 -0.41 -0.45 16 49 H 0.05 -0.07 7.21 -51.93 -0.37 -0.44 16 50 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 51 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 52 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 LS Contribution 410.82 15.07 6.19 6.19 Total: 0.00 -3.75 410.82 -10.94 -14.69 By element: Atomic # 1 Polarization: -0.12 SS G_CDS: -10.47 Total: -10.59 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 1.07 Total: 1.22 kcal Atomic # 7 Polarization: -1.27 SS G_CDS: 0.03 Total: -1.24 kcal Atomic # 8 Polarization: -1.36 SS G_CDS: -0.92 Total: -2.28 kcal Atomic # 14 Polarization: -1.15 SS G_CDS: -6.84 Total: -7.99 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -3.75 -10.94 -14.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254642319.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.812 kcal (2) G-P(sol) polarization free energy of solvation -3.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds