Wall clock time and date at job start Tue Mar 31 2020 11:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47230 * 2 1 4 4 Si 1.63094 * 114.00095 * 180.02562 * 3 2 1 5 5 C 1.86299 * 109.47178 * 299.99953 * 4 3 2 6 6 C 1.86301 * 109.47166 * 179.97438 * 4 3 2 7 7 C 1.53000 * 109.46997 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 4 9 9 N 1.46902 * 109.46901 * 180.02562 * 8 7 6 10 10 C 1.46907 * 110.99665 * 179.97438 * 9 8 7 11 11 H 1.09000 * 110.43744 * 34.29783 * 10 9 8 12 12 C 1.54270 * 110.48303 * 271.75424 * 10 9 8 13 13 C 1.53877 * 106.59702 * 217.71286 * 12 10 9 14 14 C 1.54267 * 106.59662 * 0.02562 * 13 12 10 15 15 C 1.50697 * 110.48459 * 142.42329 * 14 13 12 16 16 N 1.27946 * 120.00073 * 266.44574 * 15 14 13 17 17 Si 1.86797 * 120.00376 * 86.45402 * 15 14 13 18 18 H 1.48495 * 109.47817 * 89.99683 * 17 15 14 19 19 H 1.48501 * 109.47183 * 210.00220 * 17 15 14 20 20 H 1.48503 * 109.46973 * 329.99584 * 17 15 14 21 21 C 1.54888 * 110.48479 * 156.83887 * 10 9 8 22 22 O 1.63108 * 109.47095 * 59.99886 * 4 3 2 23 23 C 1.42899 * 113.99928 * 60.00209 * 22 4 3 24 24 C 1.52999 * 109.46889 * 179.97438 * 23 22 4 25 25 H 1.08999 * 109.47384 * 299.99902 * 1 2 3 26 26 H 1.09001 * 109.47081 * 60.00210 * 1 2 3 27 27 H 1.09008 * 109.47274 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46950 * 239.99785 * 2 1 3 29 29 H 1.08998 * 109.47349 * 120.00228 * 2 1 3 30 30 H 1.09002 * 109.46890 * 300.00041 * 5 4 3 31 31 H 1.09000 * 109.47207 * 59.99895 * 5 4 3 32 32 H 1.08996 * 109.47367 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47148 * 59.99808 * 6 4 3 34 34 H 1.09001 * 109.46900 * 299.99961 * 6 4 3 35 35 H 1.09001 * 109.47194 * 299.99695 * 7 6 4 36 36 H 1.08992 * 109.47399 * 59.99867 * 7 6 4 37 37 H 1.09001 * 109.47109 * 299.99380 * 8 7 6 38 38 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 39 39 H 1.00898 * 111.00229 * 56.04458 * 9 8 7 40 40 H 1.08995 * 110.03542 * 336.99477 * 12 10 9 41 41 H 1.08999 * 110.03007 * 98.38513 * 12 10 9 42 42 H 1.08996 * 110.03398 * 119.28539 * 13 12 10 43 43 H 1.09002 * 110.03060 * 240.67230 * 13 12 10 44 44 H 1.09009 * 110.48398 * 264.92900 * 14 13 12 45 45 H 0.97000 * 120.00446 * 179.97438 * 16 15 14 46 46 H 1.09000 * 110.75737 * 274.93180 * 21 10 9 47 47 H 1.08999 * 110.75430 * 38.30345 * 21 10 9 48 48 H 1.08997 * 109.47171 * 299.99831 * 23 22 4 49 49 H 1.08999 * 109.47156 * 59.99587 * 23 22 4 50 50 H 1.09001 * 109.47296 * 179.97438 * 24 23 22 51 51 H 1.08997 * 109.47286 * 300.00017 * 24 23 22 52 52 H 1.08999 * 109.47350 * 59.99962 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 14 3.6322 1.4761 -0.0007 5 6 4.3212 0.6494 1.5201 6 6 4.1126 3.2761 -0.0014 7 6 5.6378 3.3968 -0.0027 8 6 6.0323 4.8751 -0.0026 9 7 7.4967 4.9911 -0.0044 10 6 7.9132 6.3999 -0.0051 11 1 7.2127 7.0041 0.5713 12 6 8.0220 6.9300 -1.4497 13 6 9.2400 7.8699 -1.4824 14 6 9.8291 7.8775 -0.0567 15 6 11.3343 7.9272 -0.1083 16 7 12.0119 6.8425 -0.0706 17 14 12.2111 9.5723 -0.2271 18 1 12.4889 10.0852 1.1385 19 1 13.4907 9.3994 -0.9607 20 1 11.3509 10.5403 -0.9540 21 6 9.3469 6.5415 0.5638 22 8 4.2343 0.7527 -1.3328 23 6 3.7664 1.3140 -2.5608 24 6 4.3931 0.5622 -3.7367 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.9188 1.1328 2.4103 31 1 4.0402 -0.4037 1.5200 32 1 5.4078 0.7350 1.5194 33 1 3.7101 3.7599 0.8886 34 1 3.7094 3.7593 -0.8914 35 1 6.0413 2.9135 0.8871 36 1 6.0398 2.9131 -0.8928 37 1 5.6288 5.3589 -0.8922 38 1 5.6302 5.3585 0.8878 39 1 7.8977 4.4954 -0.7865 40 1 8.1715 6.1010 -2.1414 41 1 7.1186 7.4791 -1.7149 42 1 9.9805 7.4970 -2.1900 43 1 8.9280 8.8756 -1.7641 44 1 9.4397 8.7219 0.5124 45 1 12.9807 6.8744 -0.1042 46 1 9.3264 6.6034 1.6519 47 1 9.9764 5.7149 0.2347 48 1 2.6811 1.2265 -2.6100 49 1 4.0487 2.3657 -2.6104 50 1 4.0359 0.9900 -4.6734 51 1 5.4784 0.6501 -3.6872 52 1 4.1112 -0.4896 -3.6872 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254642319.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:10 Heat of formation + Delta-G solvation = -139.116207 kcal Electronic energy + Delta-G solvation = -24820.134362 eV Core-core repulsion = 21362.568472 eV Total energy + Delta-G solvation = -3457.565890 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.210 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -39.96662 -38.30809 -37.86702 -37.19997 -35.40660 -32.88514 -31.52759 -31.50609 -29.57422 -28.95038 -28.53061 -25.32509 -23.60248 -23.54316 -23.14663 -22.23122 -21.14833 -19.92756 -18.36164 -17.66238 -17.51471 -17.07841 -16.60886 -16.45385 -16.25262 -15.99558 -15.33912 -15.08171 -14.83703 -14.74519 -14.48150 -14.34788 -14.13287 -13.64618 -13.53072 -13.42148 -13.30669 -13.30341 -13.13571 -13.04909 -12.89314 -12.71484 -12.62347 -12.39132 -12.33662 -12.24227 -12.01780 -11.98622 -11.74697 -11.61386 -11.59799 -11.41766 -11.31438 -11.17393 -11.10307 -10.69592 -10.30002 -9.73365 -9.24976 0.87022 1.13352 1.29738 1.45881 1.77973 1.88215 2.03290 2.07074 2.28923 3.24370 3.49056 3.74920 4.01173 4.09657 4.14092 4.19688 4.22769 4.28365 4.31291 4.34077 4.44114 4.48772 4.49226 4.56491 4.57233 4.62180 4.64369 4.66707 4.69442 4.70813 4.74616 4.79278 4.79757 4.91761 4.96840 5.06927 5.07913 5.09792 5.11234 5.21087 5.26045 5.28844 5.30905 5.33353 5.39863 5.42097 5.51040 5.55696 5.58406 5.76228 6.21403 6.50479 6.98816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.070 3.930 3 O -0.668 6.668 4 Si 1.488 2.512 5 C -0.532 4.532 6 C -0.481 4.481 7 C -0.103 4.103 8 C 0.063 3.937 9 N -0.694 5.694 10 C 0.081 3.919 11 H 0.082 0.918 12 C -0.146 4.146 13 C -0.106 4.106 14 C -0.073 4.073 15 C 0.002 3.998 16 N -0.653 5.653 17 Si 0.969 3.031 18 H -0.251 1.251 19 H -0.263 1.263 20 H -0.229 1.229 21 C -0.094 4.094 22 O -0.666 6.666 23 C 0.073 3.927 24 C -0.158 4.158 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.030 0.970 38 H 0.065 0.935 39 H 0.343 0.657 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.084 0.916 44 H 0.111 0.889 45 H 0.339 0.661 46 H 0.058 0.942 47 H 0.072 0.928 48 H 0.060 0.940 49 H 0.064 0.936 50 H 0.080 0.920 51 H 0.058 0.942 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.007 1.840 -2.365 3.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.005 4.005 3 O -0.629 6.629 4 Si 1.571 2.429 5 C -0.632 4.632 6 C -0.561 4.561 7 C -0.141 4.141 8 C -0.066 4.066 9 N -0.324 5.324 10 C -0.029 4.029 11 H 0.100 0.900 12 C -0.186 4.186 13 C -0.146 4.146 14 C -0.092 4.092 15 C -0.246 4.246 16 N -0.267 5.267 17 Si 0.786 3.214 18 H -0.175 1.175 19 H -0.187 1.187 20 H -0.151 1.151 21 C -0.133 4.133 22 O -0.626 6.626 23 C -0.002 4.002 24 C -0.215 4.215 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.048 0.952 38 H 0.083 0.917 39 H 0.162 0.838 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.102 0.898 44 H 0.129 0.871 45 H 0.156 0.844 46 H 0.077 0.923 47 H 0.091 0.909 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.099 0.901 51 H 0.078 0.922 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.848 1.478 -1.758 2.948 hybrid contribution 0.747 0.690 -0.396 1.091 sum -1.101 2.168 -2.154 3.248 Atomic orbital electron populations 1.21912 0.93831 1.02917 1.02886 1.22133 0.96674 0.80427 1.01284 1.85467 1.54436 1.32115 1.90894 0.74472 0.49234 0.61278 0.57912 1.27240 1.08174 1.08761 1.19013 1.27089 0.99419 1.24173 1.05393 1.21033 0.94494 0.96024 1.02540 1.22030 0.87364 0.96966 1.00217 1.60541 1.09121 1.12376 1.50353 1.22500 0.96940 0.88314 0.95140 0.89978 1.22815 0.98617 0.99660 0.97470 1.22018 0.96720 1.00649 0.95182 1.21433 0.90039 0.99861 0.97912 1.30408 1.00191 1.02681 0.91300 1.68191 1.14355 1.33806 1.10302 0.85205 0.79039 0.75693 0.81511 1.17507 1.18743 1.15140 1.22371 0.94664 0.96968 0.99278 1.85484 1.77224 1.71259 1.28676 1.22095 0.97974 0.96880 0.83270 1.21903 1.01647 1.01137 0.96836 0.92215 0.92100 0.89986 0.91981 0.91959 0.90356 0.91291 0.90672 0.89971 0.90283 0.91400 0.91665 0.95180 0.91659 0.83830 0.92036 0.91213 0.91987 0.89767 0.87125 0.84375 0.92279 0.90922 0.92150 0.91793 0.90107 0.92249 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.17 10.28 71.98 0.74 0.91 16 2 C 0.07 0.01 5.84 71.98 0.42 0.43 16 3 O -0.67 -1.56 8.56 -131.44 -1.13 -2.68 16 4 Si 1.49 0.00 10.69 68.60 0.73 0.73 16 5 C -0.53 -0.86 8.50 113.37 0.96 0.10 16 6 C -0.48 0.12 4.30 71.98 0.31 0.43 16 7 C -0.10 -0.08 4.85 30.59 0.15 0.07 16 8 C 0.06 0.08 5.54 86.30 0.48 0.56 16 9 N -0.69 -1.55 6.35 -486.00 -3.09 -4.64 16 10 C 0.08 0.06 3.17 45.99 0.15 0.20 16 11 H 0.08 0.04 7.85 -2.39 -0.02 0.02 16 12 C -0.15 0.21 6.48 31.32 0.20 0.41 16 13 C -0.11 0.24 6.33 31.32 0.20 0.44 16 14 C -0.07 0.09 2.79 -10.43 -0.03 0.06 16 15 C 0.00 0.00 4.76 88.67 0.42 0.42 16 16 N -0.65 -2.03 12.38 24.11 0.30 -1.73 16 17 Si 0.97 -2.48 29.55 68.60 2.03 -0.45 16 18 H -0.25 0.17 7.11 99.48 0.71 0.87 16 19 H -0.26 0.05 7.11 99.48 0.71 0.76 16 20 H -0.23 0.74 7.11 99.48 0.71 1.45 16 21 C -0.09 -0.21 5.82 31.92 0.19 -0.03 16 22 O -0.67 -1.37 8.56 -131.44 -1.13 -2.50 16 23 C 0.07 -0.04 5.84 71.98 0.42 0.38 16 24 C -0.16 0.21 10.28 71.98 0.74 0.95 16 25 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 26 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 27 H 0.08 -0.34 8.14 -2.38 -0.02 -0.36 16 28 H 0.06 -0.09 7.83 -2.39 -0.02 -0.11 16 29 H 0.06 -0.11 7.21 -2.39 -0.02 -0.13 16 30 H 0.08 0.09 7.96 -2.39 -0.02 0.07 16 31 H 0.07 0.10 7.48 -2.39 -0.02 0.09 16 32 H 0.07 0.16 7.79 -2.39 -0.02 0.15 16 33 H 0.08 -0.01 7.96 -2.39 -0.02 -0.03 16 34 H 0.08 -0.08 7.48 -2.39 -0.02 -0.10 16 35 H 0.07 0.13 7.80 -2.39 -0.02 0.11 16 36 H 0.06 0.02 7.96 -2.39 -0.02 0.00 16 37 H 0.03 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.06 0.15 8.08 -2.39 -0.02 0.13 16 39 H 0.34 0.52 8.11 -89.70 -0.73 -0.21 16 40 H 0.06 -0.03 7.55 -2.39 -0.02 -0.05 16 41 H 0.07 -0.17 8.14 -2.39 -0.02 -0.18 16 42 H 0.06 -0.05 7.83 -2.39 -0.02 -0.07 16 43 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 44 H 0.11 -0.56 7.91 -2.38 -0.02 -0.58 16 45 H 0.34 0.13 8.23 -92.71 -0.76 -0.63 16 46 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 47 H 0.07 0.46 7.15 -2.39 -0.02 0.45 16 48 H 0.06 -0.12 7.83 -2.39 -0.02 -0.14 16 49 H 0.06 -0.19 7.21 -2.39 -0.02 -0.21 16 50 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 51 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 52 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 Total: 0.00 -8.63 410.82 3.19 -5.44 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: 0.12 Total: 0.49 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 5.35 Total: 5.34 kcal Atomic # 7 Polarization: -3.58 SS G_CDS: -2.79 Total: -6.37 kcal Atomic # 8 Polarization: -2.93 SS G_CDS: -2.25 Total: -5.18 kcal Atomic # 14 Polarization: -2.49 SS G_CDS: 2.76 Total: 0.28 kcal Total: -8.63 3.19 -5.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254642319.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.675 kcal (2) G-P(sol) polarization free energy of solvation -8.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds