Wall clock time and date at job start Tue Mar 31 2020 12:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35893 * 117.00217 * 2 1 4 4 C 1.38482 * 119.78406 * 359.94969 * 3 2 1 5 5 C 1.38137 * 119.71010 * 180.02562 * 4 3 2 6 6 C 1.37999 * 119.83121 * 359.86961 * 5 4 3 7 7 C 1.38917 * 120.66329 * 0.02562 * 6 5 4 8 8 C 1.37615 * 119.71762 * 0.22242 * 7 6 5 9 9 C 1.50622 * 122.58632 * 179.59561 * 8 7 6 10 10 C 1.52734 * 110.60284 * 17.71322 * 9 8 7 11 11 C 1.53327 * 108.39025 * 308.97480 * 10 9 8 12 12 H 1.08998 * 109.69042 * 310.09129 * 11 10 9 13 13 N 1.46902 * 109.68369 * 189.57458 * 11 10 9 14 14 C 1.46897 * 111.00400 * 148.97244 * 13 11 10 15 15 C 1.50705 * 110.01710 * 64.09896 * 14 13 11 16 16 H 1.07999 * 119.99847 * 264.35799 * 15 14 13 17 17 C 1.37874 * 120.00255 * 84.34840 * 15 14 13 18 18 N 1.31508 * 120.00150 * 167.70144 * 17 15 14 19 19 Si 1.86798 * 119.99752 * 347.71261 * 17 15 14 20 20 H 1.48497 * 109.47371 * 93.44182 * 19 17 15 21 21 H 1.48510 * 109.47001 * 213.43987 * 19 17 15 22 22 H 1.48497 * 109.47297 * 333.43962 * 19 17 15 23 23 C 1.54264 * 110.03318 * 302.65776 * 14 13 11 24 24 C 1.54885 * 104.19852 * 217.10095 * 23 14 13 25 25 C 1.54893 * 102.74611 * 37.94251 * 24 23 14 26 26 C 1.53876 * 110.03480 * 185.48701 * 14 13 11 27 27 C 1.50639 * 117.72923 * 180.54855 * 7 6 5 28 28 H 1.09001 * 109.47403 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46707 * 300.00634 * 1 2 3 30 30 H 1.08998 * 109.47055 * 60.00183 * 1 2 3 31 31 H 1.07995 * 120.14573 * 0.03804 * 4 3 2 32 32 H 1.07995 * 120.08445 * 179.85147 * 5 4 3 33 33 H 1.08002 * 119.66834 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.25267 * 257.42720 * 9 8 7 35 35 H 1.08997 * 109.22208 * 137.98450 * 9 8 7 36 36 H 1.08999 * 109.68293 * 189.25150 * 10 9 8 37 37 H 1.08998 * 109.71246 * 68.72033 * 10 9 8 38 38 H 1.00904 * 111.00156 * 272.92652 * 13 11 10 39 39 H 0.97000 * 120.00484 * 180.02562 * 18 17 15 40 40 H 1.08999 * 110.48590 * 335.78368 * 23 14 13 41 41 H 1.09006 * 110.48893 * 98.42240 * 23 14 13 42 42 H 1.08994 * 110.75838 * 279.62823 * 24 23 14 43 43 H 1.09002 * 110.75773 * 156.25467 * 24 23 14 44 44 H 1.08999 * 110.48467 * 203.38003 * 25 24 23 45 45 H 1.08998 * 110.48578 * 80.73340 * 25 24 23 46 46 H 1.08996 * 110.03267 * 238.56855 * 26 14 13 47 47 H 1.08998 * 110.03019 * 0.02562 * 26 14 13 48 48 H 1.08996 * 109.25912 * 77.25118 * 27 7 6 49 49 H 1.09002 * 109.25382 * 317.81596 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2875 2.3694 -0.0011 5 6 1.9163 3.5994 -0.0016 6 6 3.2947 3.6657 0.0017 7 6 4.0597 2.5062 0.0049 8 6 3.4379 1.2785 0.0003 9 6 4.2035 -0.0186 -0.0055 10 6 5.6498 0.2091 0.4295 11 6 6.2324 1.3537 -0.4080 12 1 6.0391 1.1707 -1.4650 13 7 7.6804 1.4471 -0.1789 14 6 8.3727 1.9370 -1.3783 15 6 7.9328 3.3445 -1.6892 16 1 7.1438 3.5177 -2.4060 17 6 8.5375 4.4109 -1.0584 18 7 8.3335 5.6347 -1.4945 19 14 9.6468 4.1175 0.4156 20 1 11.0554 4.0024 -0.0400 21 1 9.5240 5.2555 1.3619 22 1 9.2428 2.8615 1.0970 23 6 8.0734 1.0120 -2.5760 24 6 9.4067 0.9655 -3.3627 25 6 10.4684 0.9482 -2.2350 26 6 9.8956 1.8965 -1.1615 27 6 5.5586 2.6555 0.0211 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2091 2.3116 -0.0013 32 1 1.3306 4.5067 -0.0048 33 1 3.7835 4.6287 0.0008 34 1 4.1926 -0.4378 -1.0116 35 1 3.7278 -0.7191 0.6808 36 1 6.2300 -0.6988 0.2643 37 1 5.6783 0.4757 1.4860 38 1 7.8834 2.0302 0.6192 39 1 8.7591 6.3850 -1.0510 40 1 7.8000 0.0154 -2.2294 41 1 7.2802 1.4327 -3.1942 42 1 9.5190 1.8530 -3.9854 43 1 9.4684 0.0593 -3.9652 44 1 11.4232 1.3225 -2.6043 45 1 10.5819 -0.0586 -1.8333 46 1 10.3165 2.8946 -1.2820 47 1 10.1209 1.5130 -0.1664 48 1 5.8834 2.9130 1.0292 49 1 5.8478 3.4527 -0.6637 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256644081.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:52 Heat of formation + Delta-G solvation = -15.051646 kcal Electronic energy + Delta-G solvation = -27802.894497 eV Core-core repulsion = 24308.466662 eV Total energy + Delta-G solvation = -3494.427835 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.33216 -38.65367 -37.56189 -35.51753 -32.95330 -32.13654 -31.02853 -29.54745 -28.22201 -27.75291 -27.21716 -26.08339 -23.66792 -23.02732 -21.76856 -21.39168 -20.28310 -18.86428 -18.54909 -17.49301 -16.38964 -16.20688 -15.74990 -15.38950 -14.99967 -14.93743 -14.62222 -14.12877 -13.90591 -13.40896 -13.22462 -13.10794 -12.94935 -12.79935 -12.49540 -12.27641 -11.91783 -11.84338 -11.68727 -11.32849 -11.30950 -11.02083 -10.97061 -10.80520 -10.51560 -10.44603 -10.35071 -10.07330 -10.03933 -9.88186 -9.61964 -9.59760 -9.30869 -8.98486 -8.63552 -8.23976 -7.86933 -7.19165 -6.17290 -4.13466 1.61468 1.69911 3.21404 3.30900 3.34818 3.36263 4.00462 4.30751 4.89111 4.92308 4.99749 5.06212 5.11532 5.27732 5.34374 5.42410 5.48695 5.53112 5.55777 5.62253 5.67392 5.73271 5.79402 5.89434 6.05743 6.07808 6.17499 6.31653 6.37639 6.40638 6.42374 6.45291 6.49806 6.53729 6.57456 6.65261 6.70168 6.72921 6.75465 6.83245 6.96014 6.98599 7.04391 7.10168 7.17140 7.20241 7.29836 7.57489 7.68071 8.20245 8.53419 8.60222 8.88333 9.47269 10.94267 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.017124 B = 0.004458 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.701446 B = 6279.493580 C = 7150.101364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.119 3.881 4 C -0.223 4.223 5 C -0.088 4.088 6 C -0.154 4.154 7 C -0.020 4.020 8 C -0.107 4.107 9 C -0.065 4.065 10 C -0.110 4.110 11 C 0.106 3.894 12 H 0.076 0.924 13 N -0.688 5.688 14 C 0.203 3.797 15 C -0.530 4.530 16 H 0.073 0.927 17 C 0.075 3.925 18 N -0.888 5.888 19 Si 0.879 3.121 20 H -0.284 1.284 21 H -0.304 1.304 22 H -0.251 1.251 23 C -0.097 4.097 24 C -0.116 4.116 25 C -0.112 4.112 26 C -0.134 4.134 27 C -0.113 4.113 28 H 0.095 0.905 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.330 0.670 39 H 0.263 0.737 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.066 0.934 43 H 0.048 0.952 44 H 0.050 0.950 45 H 0.054 0.946 46 H 0.069 0.931 47 H 0.053 0.947 48 H 0.066 0.934 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.571 -9.165 3.164 14.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.074 3.926 4 C -0.242 4.242 5 C -0.106 4.106 6 C -0.173 4.173 7 C -0.020 4.020 8 C -0.108 4.108 9 C -0.103 4.103 10 C -0.149 4.149 11 C -0.005 4.005 12 H 0.094 0.906 13 N -0.320 5.320 14 C 0.115 3.885 15 C -0.569 4.569 16 H 0.091 0.909 17 C -0.128 4.128 18 N -0.525 5.525 19 Si 0.710 3.290 20 H -0.211 1.211 21 H -0.232 1.232 22 H -0.177 1.177 23 C -0.135 4.135 24 C -0.154 4.154 25 C -0.150 4.150 26 C -0.172 4.172 27 C -0.151 4.151 28 H 0.114 0.886 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.151 0.849 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.072 0.928 48 H 0.085 0.915 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.310 -9.836 3.048 14.572 hybrid contribution -0.049 1.422 0.834 1.649 sum -10.358 -8.414 3.881 13.898 Atomic orbital electron populations 1.22979 0.79155 1.03389 1.01078 1.86045 1.20667 1.27330 1.88967 1.18999 0.91867 0.83823 0.97908 1.21003 0.99306 0.92587 1.11266 1.20777 0.94638 0.96655 0.98563 1.21211 0.93551 0.98628 1.03883 1.19797 0.96841 0.91038 0.94363 1.19026 0.89748 0.95809 1.06225 1.20233 0.94983 0.93394 1.01663 1.21646 0.93791 0.99745 0.99678 1.21188 0.88389 0.91818 0.99069 0.90577 1.61456 1.06324 1.56358 1.07847 1.19489 0.89285 0.93010 0.86759 1.21497 1.20963 0.88910 1.25528 0.90887 1.25061 0.95775 0.95111 0.96860 1.69961 1.44031 0.98861 1.39687 0.87287 0.81215 0.77388 0.83133 1.21092 1.23191 1.17670 1.22290 0.96269 0.98316 0.96633 1.22351 0.95853 1.00134 0.97068 1.22198 0.97604 0.98722 0.96504 1.22639 0.97712 0.99087 0.97773 1.21529 0.88497 1.02272 1.02774 0.88644 0.93016 0.92928 0.86154 0.86329 0.85887 0.91229 0.91284 0.91278 0.92648 0.84898 0.92720 0.92908 0.92688 0.91560 0.93323 0.93164 0.92676 0.91311 0.92835 0.91526 0.86836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.28 9.53 -19.40 -0.18 -4.47 16 3 C 0.12 1.80 6.65 -39.08 -0.26 1.54 16 4 C -0.22 -3.07 9.02 -39.53 -0.36 -3.43 16 5 C -0.09 -1.27 10.04 -39.71 -0.40 -1.66 16 6 C -0.15 -2.56 9.60 -39.42 -0.38 -2.94 16 7 C -0.02 -0.34 5.74 -104.63 -0.60 -0.94 16 8 C -0.11 -1.78 5.75 -104.47 -0.60 -2.38 16 9 C -0.07 -1.00 5.28 -28.06 -0.15 -1.15 16 10 C -0.11 -1.78 5.60 -26.70 -0.15 -1.93 16 11 C 0.11 1.98 1.97 -67.68 -0.13 1.85 16 12 H 0.08 1.51 6.16 -51.93 -0.32 1.19 16 13 N -0.69 -13.95 5.77 -93.05 -0.54 -14.49 16 14 C 0.20 4.40 0.49 -131.63 -0.07 4.34 16 15 C -0.53 -13.39 6.00 -34.44 -0.21 -13.60 16 16 H 0.07 2.07 7.64 -52.49 -0.40 1.67 16 17 C 0.08 1.99 5.15 -17.82 -0.09 1.90 16 18 N -0.89 -25.49 13.96 55.43 0.77 -24.71 16 19 Si 0.88 20.65 23.05 -169.99 -3.92 16.73 16 20 H -0.28 -6.71 6.67 56.52 0.38 -6.33 16 21 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.25 -5.49 4.52 56.52 0.26 -5.23 16 23 C -0.10 -1.91 4.43 -25.08 -0.11 -2.03 16 24 C -0.12 -2.11 6.91 -24.74 -0.17 -2.28 16 25 C -0.11 -2.05 6.83 -25.07 -0.17 -2.22 16 26 C -0.13 -2.86 3.93 -25.61 -0.10 -2.96 16 27 C -0.11 -2.17 4.66 -28.05 -0.13 -2.30 16 28 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.42 7.65 -51.93 -0.40 0.02 16 30 H 0.05 0.43 7.65 -51.93 -0.40 0.04 16 31 H 0.12 1.32 6.27 -52.49 -0.33 0.99 16 32 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.12 2.02 8.05 -52.49 -0.42 1.60 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 0.99 7.75 -51.93 -0.40 0.58 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.89 8.10 -51.93 -0.42 0.47 16 38 H 0.33 7.01 4.99 -39.29 -0.20 6.81 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.05 0.99 7.89 -51.93 -0.41 0.58 16 41 H 0.05 1.13 7.43 -51.93 -0.39 0.74 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.07 1.61 4.06 -51.93 -0.21 1.40 16 47 H 0.05 1.11 6.72 -51.93 -0.35 0.76 16 48 H 0.07 1.28 7.92 -51.93 -0.41 0.87 16 49 H 0.11 2.55 5.93 -51.93 -0.31 2.24 16 LS Contribution 356.03 15.07 5.37 5.37 Total: -1.00 -27.97 356.03 -9.63 -37.60 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -8.05 Total: 12.91 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: -3.08 Total: -28.93 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.24 Total: -39.20 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -0.18 Total: -4.47 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -3.92 Total: 16.73 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.97 -9.63 -37.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256644081.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.549 kcal (2) G-P(sol) polarization free energy of solvation -27.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds