Wall clock time and date at job start Tue Mar 31 2020 12:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35893 * 117.00217 * 2 1 4 4 C 1.38482 * 119.78406 * 359.94969 * 3 2 1 5 5 C 1.38137 * 119.71010 * 180.02562 * 4 3 2 6 6 C 1.37999 * 119.83121 * 359.86961 * 5 4 3 7 7 C 1.38917 * 120.66329 * 0.02562 * 6 5 4 8 8 C 1.37615 * 119.71762 * 0.22242 * 7 6 5 9 9 C 1.50622 * 122.58632 * 179.59561 * 8 7 6 10 10 C 1.52734 * 110.60284 * 17.71322 * 9 8 7 11 11 C 1.53327 * 108.39025 * 308.97480 * 10 9 8 12 12 H 1.08998 * 109.69042 * 310.09129 * 11 10 9 13 13 N 1.46902 * 109.68369 * 189.57458 * 11 10 9 14 14 C 1.46897 * 111.00400 * 148.97244 * 13 11 10 15 15 C 1.50705 * 110.01710 * 64.09896 * 14 13 11 16 16 H 1.07999 * 119.99847 * 264.35799 * 15 14 13 17 17 C 1.37874 * 120.00255 * 84.34840 * 15 14 13 18 18 N 1.31508 * 120.00150 * 167.70144 * 17 15 14 19 19 Si 1.86798 * 119.99752 * 347.71261 * 17 15 14 20 20 H 1.48497 * 109.47371 * 93.44182 * 19 17 15 21 21 H 1.48510 * 109.47001 * 213.43987 * 19 17 15 22 22 H 1.48497 * 109.47297 * 333.43962 * 19 17 15 23 23 C 1.54264 * 110.03318 * 302.65776 * 14 13 11 24 24 C 1.54885 * 104.19852 * 217.10095 * 23 14 13 25 25 C 1.54893 * 102.74611 * 37.94251 * 24 23 14 26 26 C 1.53876 * 110.03480 * 185.48701 * 14 13 11 27 27 C 1.50639 * 117.72923 * 180.54855 * 7 6 5 28 28 H 1.09001 * 109.47403 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46707 * 300.00634 * 1 2 3 30 30 H 1.08998 * 109.47055 * 60.00183 * 1 2 3 31 31 H 1.07995 * 120.14573 * 0.03804 * 4 3 2 32 32 H 1.07995 * 120.08445 * 179.85147 * 5 4 3 33 33 H 1.08002 * 119.66834 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.25267 * 257.42720 * 9 8 7 35 35 H 1.08997 * 109.22208 * 137.98450 * 9 8 7 36 36 H 1.08999 * 109.68293 * 189.25150 * 10 9 8 37 37 H 1.08998 * 109.71246 * 68.72033 * 10 9 8 38 38 H 1.00904 * 111.00156 * 272.92652 * 13 11 10 39 39 H 0.97000 * 120.00484 * 180.02562 * 18 17 15 40 40 H 1.08999 * 110.48590 * 335.78368 * 23 14 13 41 41 H 1.09006 * 110.48893 * 98.42240 * 23 14 13 42 42 H 1.08994 * 110.75838 * 279.62823 * 24 23 14 43 43 H 1.09002 * 110.75773 * 156.25467 * 24 23 14 44 44 H 1.08999 * 110.48467 * 203.38003 * 25 24 23 45 45 H 1.08998 * 110.48578 * 80.73340 * 25 24 23 46 46 H 1.08996 * 110.03267 * 238.56855 * 26 14 13 47 47 H 1.08998 * 110.03019 * 0.02562 * 26 14 13 48 48 H 1.08996 * 109.25912 * 77.25118 * 27 7 6 49 49 H 1.09002 * 109.25382 * 317.81596 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2875 2.3694 -0.0011 5 6 1.9163 3.5994 -0.0016 6 6 3.2947 3.6657 0.0017 7 6 4.0597 2.5062 0.0049 8 6 3.4379 1.2785 0.0003 9 6 4.2035 -0.0186 -0.0055 10 6 5.6498 0.2091 0.4295 11 6 6.2324 1.3537 -0.4080 12 1 6.0391 1.1707 -1.4650 13 7 7.6804 1.4471 -0.1789 14 6 8.3727 1.9370 -1.3783 15 6 7.9328 3.3445 -1.6892 16 1 7.1438 3.5177 -2.4060 17 6 8.5375 4.4109 -1.0584 18 7 8.3335 5.6347 -1.4945 19 14 9.6468 4.1175 0.4156 20 1 11.0554 4.0024 -0.0400 21 1 9.5240 5.2555 1.3619 22 1 9.2428 2.8615 1.0970 23 6 8.0734 1.0120 -2.5760 24 6 9.4067 0.9655 -3.3627 25 6 10.4684 0.9482 -2.2350 26 6 9.8956 1.8965 -1.1615 27 6 5.5586 2.6555 0.0211 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2091 2.3116 -0.0013 32 1 1.3306 4.5067 -0.0048 33 1 3.7835 4.6287 0.0008 34 1 4.1926 -0.4378 -1.0116 35 1 3.7278 -0.7191 0.6808 36 1 6.2300 -0.6988 0.2643 37 1 5.6783 0.4757 1.4860 38 1 7.8834 2.0302 0.6192 39 1 8.7591 6.3850 -1.0510 40 1 7.8000 0.0154 -2.2294 41 1 7.2802 1.4327 -3.1942 42 1 9.5190 1.8530 -3.9854 43 1 9.4684 0.0593 -3.9652 44 1 11.4232 1.3225 -2.6043 45 1 10.5819 -0.0586 -1.8333 46 1 10.3165 2.8946 -1.2820 47 1 10.1209 1.5130 -0.1664 48 1 5.8834 2.9130 1.0292 49 1 5.8478 3.4527 -0.6637 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256644081.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:51 Heat of formation + Delta-G solvation = -31.189495 kcal Electronic energy + Delta-G solvation = -27803.594287 eV Core-core repulsion = 24308.466662 eV Total energy + Delta-G solvation = -3495.127625 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.52740 -40.15220 -38.83247 -36.85230 -34.64234 -33.88777 -32.34543 -30.89175 -29.75504 -29.21714 -28.21611 -27.63651 -25.45440 -24.36590 -23.11405 -22.61656 -21.80110 -20.50195 -20.07045 -18.65414 -18.19752 -17.36870 -16.91399 -16.81483 -16.60378 -16.35349 -16.06950 -15.44409 -15.33141 -14.95352 -14.65904 -14.46275 -14.38482 -14.20493 -14.04736 -13.84903 -13.33756 -13.09599 -12.86706 -12.75238 -12.64659 -12.50483 -12.35594 -12.28797 -12.14844 -11.90295 -11.80831 -11.61949 -11.51310 -11.43834 -11.19435 -11.16736 -10.99626 -10.81149 -10.63343 -9.52809 -9.03375 -8.94366 -8.27794 -6.25024 0.39423 0.48366 1.30299 1.35196 1.43860 2.30782 2.40277 2.77952 3.03273 3.61638 3.78218 3.91180 3.97406 4.07281 4.12157 4.13201 4.22720 4.26330 4.32821 4.43644 4.45153 4.50340 4.56819 4.68598 4.74179 4.74682 4.76827 4.79885 4.85920 4.94730 5.01714 5.02930 5.06052 5.07715 5.16706 5.23593 5.24586 5.30866 5.35431 5.39652 5.44889 5.50835 5.54915 5.64039 5.67327 5.74835 5.82095 5.85153 6.24826 6.50571 6.69945 6.72033 6.87526 7.38268 8.87746 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.017124 B = 0.004458 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.701446 B = 6279.493580 C = 7150.101364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.328 6.328 3 C 0.119 3.881 4 C -0.216 4.216 5 C -0.084 4.084 6 C -0.179 4.179 7 C -0.043 4.043 8 C -0.124 4.124 9 C -0.058 4.058 10 C -0.099 4.099 11 C 0.108 3.892 12 H 0.061 0.939 13 N -0.677 5.677 14 C 0.199 3.801 15 C -0.511 4.511 16 H 0.026 0.974 17 C 0.025 3.975 18 N -0.940 5.940 19 Si 0.934 3.066 20 H -0.280 1.280 21 H -0.316 1.316 22 H -0.224 1.224 23 C -0.093 4.093 24 C -0.113 4.113 25 C -0.106 4.106 26 C -0.140 4.140 27 C -0.101 4.101 28 H 0.120 0.880 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.155 0.845 32 H 0.146 0.854 33 H 0.108 0.892 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.324 0.676 39 H 0.260 0.740 40 H 0.070 0.930 41 H 0.033 0.967 42 H 0.045 0.955 43 H 0.083 0.917 44 H 0.063 0.937 45 H 0.081 0.919 46 H 0.043 0.957 47 H 0.063 0.937 48 H 0.059 0.941 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.710 -12.445 4.187 17.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.241 6.241 3 C 0.073 3.927 4 C -0.234 4.234 5 C -0.102 4.102 6 C -0.197 4.197 7 C -0.043 4.043 8 C -0.124 4.124 9 C -0.096 4.096 10 C -0.137 4.137 11 C -0.002 4.002 12 H 0.079 0.921 13 N -0.308 5.308 14 C 0.110 3.890 15 C -0.550 4.550 16 H 0.044 0.956 17 C -0.173 4.173 18 N -0.581 5.581 19 Si 0.763 3.237 20 H -0.207 1.207 21 H -0.245 1.245 22 H -0.147 1.147 23 C -0.131 4.131 24 C -0.151 4.151 25 C -0.144 4.144 26 C -0.178 4.178 27 C -0.139 4.139 28 H 0.138 0.862 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.173 0.827 32 H 0.164 0.836 33 H 0.126 0.874 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.144 0.856 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.101 0.899 44 H 0.081 0.919 45 H 0.100 0.900 46 H 0.062 0.938 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.465 -13.159 4.067 17.920 hybrid contribution 0.091 2.439 0.429 2.478 sum -11.374 -10.720 4.496 16.263 Atomic orbital electron populations 1.23344 0.76633 1.05528 1.02131 1.86031 1.23216 1.26340 1.88555 1.19061 0.91532 0.85043 0.97022 1.21382 1.01022 0.91640 1.09373 1.21074 0.93611 0.98357 0.97145 1.21255 0.95015 0.97834 1.05605 1.19667 0.95667 0.92324 0.96680 1.19157 0.91050 0.95546 1.06669 1.20199 0.94148 0.93138 1.02097 1.21535 0.94450 0.98665 0.99036 1.21219 0.87547 0.92668 0.98812 0.92096 1.61523 1.07259 1.55240 1.06798 1.19519 0.90248 0.91034 0.88207 1.21613 1.18773 0.91300 1.23360 0.95623 1.25737 0.97509 0.94662 0.99375 1.70108 1.46411 0.99930 1.41605 0.86389 0.79539 0.77873 0.79911 1.20670 1.24503 1.14725 1.22229 0.96821 0.98387 0.95710 1.22345 0.94687 1.00908 0.97164 1.22205 0.97749 0.99284 0.95152 1.22625 0.96773 0.98746 0.99674 1.21235 0.90549 1.01155 1.01005 0.86178 0.91734 0.91967 0.82708 0.83605 0.87351 0.91069 0.89700 0.90025 0.92457 0.85630 0.93078 0.91114 0.94787 0.93595 0.89889 0.91861 0.90018 0.93846 0.91815 0.92280 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.37 16 2 O -0.33 -7.88 9.53 -92.35 -0.88 -8.76 16 3 C 0.12 3.36 6.65 22.60 0.15 3.51 16 4 C -0.22 -5.39 9.02 22.30 0.20 -5.19 16 5 C -0.08 -2.32 10.04 22.19 0.22 -2.09 16 6 C -0.18 -6.17 9.60 22.38 0.21 -5.95 16 7 C -0.04 -1.56 5.74 -19.87 -0.11 -1.67 16 8 C -0.12 -4.01 5.75 -19.77 -0.11 -4.13 16 9 C -0.06 -1.70 5.28 29.73 0.16 -1.54 16 10 C -0.10 -3.05 5.60 30.62 0.17 -2.88 16 11 C 0.11 4.09 1.97 44.94 0.09 4.18 16 12 H 0.06 2.49 6.16 -2.39 -0.01 2.48 16 13 N -0.68 -27.23 5.77 -448.29 -2.59 -29.81 16 14 C 0.20 8.69 0.49 3.51 0.00 8.69 16 15 C -0.51 -27.34 6.00 25.60 0.15 -27.18 16 16 H 0.03 1.58 7.64 -2.91 -0.02 1.56 16 17 C 0.03 1.42 5.15 84.65 0.44 1.85 16 18 N -0.94 -57.51 13.96 21.45 0.30 -57.21 16 19 Si 0.93 43.86 23.05 68.60 1.58 45.45 16 20 H -0.28 -12.93 6.67 99.48 0.66 -12.26 16 21 H -0.32 -15.37 7.11 99.48 0.71 -14.66 16 22 H -0.22 -9.36 4.52 99.48 0.45 -8.91 16 23 C -0.09 -3.65 4.43 31.67 0.14 -3.51 16 24 C -0.11 -3.92 6.91 31.89 0.22 -3.70 16 25 C -0.11 -3.57 6.83 31.67 0.22 -3.35 16 26 C -0.14 -5.79 3.93 31.32 0.12 -5.66 16 27 C -0.10 -4.12 4.66 29.74 0.14 -3.98 16 28 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 0.77 7.65 -2.39 -0.02 0.75 16 30 H 0.06 0.78 7.65 -2.39 -0.02 0.76 16 31 H 0.16 2.75 6.27 -2.91 -0.02 2.73 16 32 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 33 H 0.11 3.92 8.05 -2.91 -0.02 3.89 16 34 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.08 2.20 7.75 -2.39 -0.02 2.19 16 36 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.06 1.75 8.10 -2.39 -0.02 1.74 16 38 H 0.32 13.61 4.99 -89.69 -0.45 13.17 16 39 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 40 H 0.07 2.51 7.89 -2.39 -0.02 2.49 16 41 H 0.03 1.44 7.43 -2.38 -0.02 1.42 16 42 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 43 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.04 2.02 4.06 -2.39 -0.01 2.01 16 47 H 0.06 2.48 6.72 -2.39 -0.02 2.47 16 48 H 0.06 2.40 7.92 -2.39 -0.02 2.39 16 49 H 0.07 3.39 5.93 -2.39 -0.01 3.37 16 Total: -1.00 -64.84 356.03 2.13 -62.71 By element: Atomic # 1 Polarization: 38.68 SS G_CDS: 0.19 Total: 38.87 kcal Atomic # 6 Polarization: -54.76 SS G_CDS: 3.52 Total: -51.24 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -2.29 Total: -87.03 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -0.88 Total: -8.76 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.58 Total: 45.45 kcal Total: -64.84 2.13 -62.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256644081.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.521 kcal (2) G-P(sol) polarization free energy of solvation -64.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds