Wall clock time and date at job start Tue Mar 31 2020 12:01:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42906 * 1
3 3 C 1.35893 * 117.00217 * 2 1
4 4 C 1.38482 * 119.78406 * 359.94969 * 3 2 1
5 5 C 1.38137 * 119.71010 * 180.02562 * 4 3 2
6 6 C 1.37999 * 119.83121 * 359.86961 * 5 4 3
7 7 C 1.38917 * 120.66329 * 0.02562 * 6 5 4
8 8 C 1.37615 * 119.71762 * 0.22242 * 7 6 5
9 9 C 1.50622 * 122.58632 * 179.59561 * 8 7 6
10 10 C 1.52734 * 110.60284 * 17.71322 * 9 8 7
11 11 C 1.53327 * 108.39025 * 308.97480 * 10 9 8
12 12 H 1.08998 * 109.69042 * 310.09129 * 11 10 9
13 13 N 1.46902 * 109.68369 * 189.57458 * 11 10 9
14 14 C 1.46897 * 111.00400 * 148.97244 * 13 11 10
15 15 C 1.50705 * 110.01710 * 64.09896 * 14 13 11
16 16 H 1.07999 * 119.99847 * 264.35799 * 15 14 13
17 17 C 1.37874 * 120.00255 * 84.34840 * 15 14 13
18 18 N 1.31508 * 120.00150 * 167.70144 * 17 15 14
19 19 Si 1.86798 * 119.99752 * 347.71261 * 17 15 14
20 20 H 1.48497 * 109.47371 * 93.44182 * 19 17 15
21 21 H 1.48510 * 109.47001 * 213.43987 * 19 17 15
22 22 H 1.48497 * 109.47297 * 333.43962 * 19 17 15
23 23 C 1.54264 * 110.03318 * 302.65776 * 14 13 11
24 24 C 1.54885 * 104.19852 * 217.10095 * 23 14 13
25 25 C 1.54893 * 102.74611 * 37.94251 * 24 23 14
26 26 C 1.53876 * 110.03480 * 185.48701 * 14 13 11
27 27 C 1.50639 * 117.72923 * 180.54855 * 7 6 5
28 28 H 1.09001 * 109.47403 * 180.02562 * 1 2 3
29 29 H 1.09000 * 109.46707 * 300.00634 * 1 2 3
30 30 H 1.08998 * 109.47055 * 60.00183 * 1 2 3
31 31 H 1.07995 * 120.14573 * 0.03804 * 4 3 2
32 32 H 1.07995 * 120.08445 * 179.85147 * 5 4 3
33 33 H 1.08002 * 119.66834 * 179.97438 * 6 5 4
34 34 H 1.08998 * 109.25267 * 257.42720 * 9 8 7
35 35 H 1.08997 * 109.22208 * 137.98450 * 9 8 7
36 36 H 1.08999 * 109.68293 * 189.25150 * 10 9 8
37 37 H 1.08998 * 109.71246 * 68.72033 * 10 9 8
38 38 H 1.00904 * 111.00156 * 272.92652 * 13 11 10
39 39 H 0.97000 * 120.00484 * 180.02562 * 18 17 15
40 40 H 1.08999 * 110.48590 * 335.78368 * 23 14 13
41 41 H 1.09006 * 110.48893 * 98.42240 * 23 14 13
42 42 H 1.08994 * 110.75838 * 279.62823 * 24 23 14
43 43 H 1.09002 * 110.75773 * 156.25467 * 24 23 14
44 44 H 1.08999 * 110.48467 * 203.38003 * 25 24 23
45 45 H 1.08998 * 110.48578 * 80.73340 * 25 24 23
46 46 H 1.08996 * 110.03267 * 238.56855 * 26 14 13
47 47 H 1.08998 * 110.03019 * 0.02562 * 26 14 13
48 48 H 1.08996 * 109.25912 * 77.25118 * 27 7 6
49 49 H 1.09002 * 109.25382 * 317.81596 * 27 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0461 1.2108 0.0000
4 6 1.2875 2.3694 -0.0011
5 6 1.9163 3.5994 -0.0016
6 6 3.2947 3.6657 0.0017
7 6 4.0597 2.5062 0.0049
8 6 3.4379 1.2785 0.0003
9 6 4.2035 -0.0186 -0.0055
10 6 5.6498 0.2091 0.4295
11 6 6.2324 1.3537 -0.4080
12 1 6.0391 1.1707 -1.4650
13 7 7.6804 1.4471 -0.1789
14 6 8.3727 1.9370 -1.3783
15 6 7.9328 3.3445 -1.6892
16 1 7.1438 3.5177 -2.4060
17 6 8.5375 4.4109 -1.0584
18 7 8.3335 5.6347 -1.4945
19 14 9.6468 4.1175 0.4156
20 1 11.0554 4.0024 -0.0400
21 1 9.5240 5.2555 1.3619
22 1 9.2428 2.8615 1.0970
23 6 8.0734 1.0120 -2.5760
24 6 9.4067 0.9655 -3.3627
25 6 10.4684 0.9482 -2.2350
26 6 9.8956 1.8965 -1.1615
27 6 5.5586 2.6555 0.0211
28 1 -0.3634 -1.0277 0.0005
29 1 -0.3633 0.5139 0.8899
30 1 -0.3633 0.5138 -0.8900
31 1 0.2091 2.3116 -0.0013
32 1 1.3306 4.5067 -0.0048
33 1 3.7835 4.6287 0.0008
34 1 4.1926 -0.4378 -1.0116
35 1 3.7278 -0.7191 0.6808
36 1 6.2300 -0.6988 0.2643
37 1 5.6783 0.4757 1.4860
38 1 7.8834 2.0302 0.6192
39 1 8.7591 6.3850 -1.0510
40 1 7.8000 0.0154 -2.2294
41 1 7.2802 1.4327 -3.1942
42 1 9.5190 1.8530 -3.9854
43 1 9.4684 0.0593 -3.9652
44 1 11.4232 1.3225 -2.6043
45 1 10.5819 -0.0586 -1.8333
46 1 10.3165 2.8946 -1.2820
47 1 10.1209 1.5130 -0.1664
48 1 5.8834 2.9130 1.0292
49 1 5.8478 3.4527 -0.6637
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001256644081.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:01:51
Heat of formation + Delta-G solvation = -31.189495 kcal
Electronic energy + Delta-G solvation = -27803.594287 eV
Core-core repulsion = 24308.466662 eV
Total energy + Delta-G solvation = -3495.127625 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-41.52740 -40.15220 -38.83247 -36.85230 -34.64234 -33.88777 -32.34543 -30.89175
-29.75504 -29.21714 -28.21611 -27.63651 -25.45440 -24.36590 -23.11405 -22.61656
-21.80110 -20.50195 -20.07045 -18.65414 -18.19752 -17.36870 -16.91399 -16.81483
-16.60378 -16.35349 -16.06950 -15.44409 -15.33141 -14.95352 -14.65904 -14.46275
-14.38482 -14.20493 -14.04736 -13.84903 -13.33756 -13.09599 -12.86706 -12.75238
-12.64659 -12.50483 -12.35594 -12.28797 -12.14844 -11.90295 -11.80831 -11.61949
-11.51310 -11.43834 -11.19435 -11.16736 -10.99626 -10.81149 -10.63343 -9.52809
-9.03375 -8.94366 -8.27794 -6.25024 0.39423 0.48366 1.30299 1.35196
1.43860 2.30782 2.40277 2.77952 3.03273 3.61638 3.78218 3.91180
3.97406 4.07281 4.12157 4.13201 4.22720 4.26330 4.32821 4.43644
4.45153 4.50340 4.56819 4.68598 4.74179 4.74682 4.76827 4.79885
4.85920 4.94730 5.01714 5.02930 5.06052 5.07715 5.16706 5.23593
5.24586 5.30866 5.35431 5.39652 5.44889 5.50835 5.54915 5.64039
5.67327 5.74835 5.82095 5.85153 6.24826 6.50571 6.69945 6.72033
6.87526 7.38268 8.87746
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.017124 B = 0.004458 C = 0.003915
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1634.701446 B = 6279.493580 C = 7150.101364
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 O -0.328 6.328
3 C 0.119 3.881
4 C -0.216 4.216
5 C -0.084 4.084
6 C -0.179 4.179
7 C -0.043 4.043
8 C -0.124 4.124
9 C -0.058 4.058
10 C -0.099 4.099
11 C 0.108 3.892
12 H 0.061 0.939
13 N -0.677 5.677
14 C 0.199 3.801
15 C -0.511 4.511
16 H 0.026 0.974
17 C 0.025 3.975
18 N -0.940 5.940
19 Si 0.934 3.066
20 H -0.280 1.280
21 H -0.316 1.316
22 H -0.224 1.224
23 C -0.093 4.093
24 C -0.113 4.113
25 C -0.106 4.106
26 C -0.140 4.140
27 C -0.101 4.101
28 H 0.120 0.880
29 H 0.064 0.936
30 H 0.062 0.938
31 H 0.155 0.845
32 H 0.146 0.854
33 H 0.108 0.892
34 H 0.071 0.929
35 H 0.085 0.915
36 H 0.081 0.919
37 H 0.057 0.943
38 H 0.324 0.676
39 H 0.260 0.740
40 H 0.070 0.930
41 H 0.033 0.967
42 H 0.045 0.955
43 H 0.083 0.917
44 H 0.063 0.937
45 H 0.081 0.919
46 H 0.043 0.957
47 H 0.063 0.937
48 H 0.059 0.941
49 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.710 -12.445 4.187 17.593
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 O -0.241 6.241
3 C 0.073 3.927
4 C -0.234 4.234
5 C -0.102 4.102
6 C -0.197 4.197
7 C -0.043 4.043
8 C -0.124 4.124
9 C -0.096 4.096
10 C -0.137 4.137
11 C -0.002 4.002
12 H 0.079 0.921
13 N -0.308 5.308
14 C 0.110 3.890
15 C -0.550 4.550
16 H 0.044 0.956
17 C -0.173 4.173
18 N -0.581 5.581
19 Si 0.763 3.237
20 H -0.207 1.207
21 H -0.245 1.245
22 H -0.147 1.147
23 C -0.131 4.131
24 C -0.151 4.151
25 C -0.144 4.144
26 C -0.178 4.178
27 C -0.139 4.139
28 H 0.138 0.862
29 H 0.083 0.917
30 H 0.080 0.920
31 H 0.173 0.827
32 H 0.164 0.836
33 H 0.126 0.874
34 H 0.089 0.911
35 H 0.103 0.897
36 H 0.100 0.900
37 H 0.075 0.925
38 H 0.144 0.856
39 H 0.069 0.931
40 H 0.089 0.911
41 H 0.052 0.948
42 H 0.064 0.936
43 H 0.101 0.899
44 H 0.081 0.919
45 H 0.100 0.900
46 H 0.062 0.938
47 H 0.082 0.918
48 H 0.077 0.923
49 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -11.465 -13.159 4.067 17.920
hybrid contribution 0.091 2.439 0.429 2.478
sum -11.374 -10.720 4.496 16.263
Atomic orbital electron populations
1.23344 0.76633 1.05528 1.02131 1.86031 1.23216 1.26340 1.88555
1.19061 0.91532 0.85043 0.97022 1.21382 1.01022 0.91640 1.09373
1.21074 0.93611 0.98357 0.97145 1.21255 0.95015 0.97834 1.05605
1.19667 0.95667 0.92324 0.96680 1.19157 0.91050 0.95546 1.06669
1.20199 0.94148 0.93138 1.02097 1.21535 0.94450 0.98665 0.99036
1.21219 0.87547 0.92668 0.98812 0.92096 1.61523 1.07259 1.55240
1.06798 1.19519 0.90248 0.91034 0.88207 1.21613 1.18773 0.91300
1.23360 0.95623 1.25737 0.97509 0.94662 0.99375 1.70108 1.46411
0.99930 1.41605 0.86389 0.79539 0.77873 0.79911 1.20670 1.24503
1.14725 1.22229 0.96821 0.98387 0.95710 1.22345 0.94687 1.00908
0.97164 1.22205 0.97749 0.99284 0.95152 1.22625 0.96773 0.98746
0.99674 1.21235 0.90549 1.01155 1.01005 0.86178 0.91734 0.91967
0.82708 0.83605 0.87351 0.91069 0.89700 0.90025 0.92457 0.85630
0.93078 0.91114 0.94787 0.93595 0.89889 0.91861 0.90018 0.93846
0.91815 0.92280 0.91328
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.25 9.81 113.37 1.11 1.37 16
2 O -0.33 -7.88 9.53 -92.35 -0.88 -8.76 16
3 C 0.12 3.36 6.65 22.60 0.15 3.51 16
4 C -0.22 -5.39 9.02 22.30 0.20 -5.19 16
5 C -0.08 -2.32 10.04 22.19 0.22 -2.09 16
6 C -0.18 -6.17 9.60 22.38 0.21 -5.95 16
7 C -0.04 -1.56 5.74 -19.87 -0.11 -1.67 16
8 C -0.12 -4.01 5.75 -19.77 -0.11 -4.13 16
9 C -0.06 -1.70 5.28 29.73 0.16 -1.54 16
10 C -0.10 -3.05 5.60 30.62 0.17 -2.88 16
11 C 0.11 4.09 1.97 44.94 0.09 4.18 16
12 H 0.06 2.49 6.16 -2.39 -0.01 2.48 16
13 N -0.68 -27.23 5.77 -448.29 -2.59 -29.81 16
14 C 0.20 8.69 0.49 3.51 0.00 8.69 16
15 C -0.51 -27.34 6.00 25.60 0.15 -27.18 16
16 H 0.03 1.58 7.64 -2.91 -0.02 1.56 16
17 C 0.03 1.42 5.15 84.65 0.44 1.85 16
18 N -0.94 -57.51 13.96 21.45 0.30 -57.21 16
19 Si 0.93 43.86 23.05 68.60 1.58 45.45 16
20 H -0.28 -12.93 6.67 99.48 0.66 -12.26 16
21 H -0.32 -15.37 7.11 99.48 0.71 -14.66 16
22 H -0.22 -9.36 4.52 99.48 0.45 -8.91 16
23 C -0.09 -3.65 4.43 31.67 0.14 -3.51 16
24 C -0.11 -3.92 6.91 31.89 0.22 -3.70 16
25 C -0.11 -3.57 6.83 31.67 0.22 -3.35 16
26 C -0.14 -5.79 3.93 31.32 0.12 -5.66 16
27 C -0.10 -4.12 4.66 29.74 0.14 -3.98 16
28 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16
29 H 0.06 0.77 7.65 -2.39 -0.02 0.75 16
30 H 0.06 0.78 7.65 -2.39 -0.02 0.76 16
31 H 0.16 2.75 6.27 -2.91 -0.02 2.73 16
32 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16
33 H 0.11 3.92 8.05 -2.91 -0.02 3.89 16
34 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16
35 H 0.08 2.20 7.75 -2.39 -0.02 2.19 16
36 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16
37 H 0.06 1.75 8.10 -2.39 -0.02 1.74 16
38 H 0.32 13.61 4.99 -89.69 -0.45 13.17 16
39 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16
40 H 0.07 2.51 7.89 -2.39 -0.02 2.49 16
41 H 0.03 1.44 7.43 -2.38 -0.02 1.42 16
42 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16
43 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16
44 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16
45 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16
46 H 0.04 2.02 4.06 -2.39 -0.01 2.01 16
47 H 0.06 2.48 6.72 -2.39 -0.02 2.47 16
48 H 0.06 2.40 7.92 -2.39 -0.02 2.39 16
49 H 0.07 3.39 5.93 -2.39 -0.01 3.37 16
Total: -1.00 -64.84 356.03 2.13 -62.71
By element:
Atomic # 1 Polarization: 38.68 SS G_CDS: 0.19 Total: 38.87 kcal
Atomic # 6 Polarization: -54.76 SS G_CDS: 3.52 Total: -51.24 kcal
Atomic # 7 Polarization: -84.74 SS G_CDS: -2.29 Total: -87.03 kcal
Atomic # 8 Polarization: -7.88 SS G_CDS: -0.88 Total: -8.76 kcal
Atomic # 14 Polarization: 43.86 SS G_CDS: 1.58 Total: 45.45 kcal
Total: -64.84 2.13 -62.71 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001256644081.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.521 kcal
(2) G-P(sol) polarization free energy of solvation -64.838 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.317 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.128 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.710 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.189 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds