Wall clock time and date at job start Tue Mar 31 2020 12:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35903 * 116.99674 * 2 1 4 4 C 1.38468 * 119.79149 * 359.96974 * 3 2 1 5 5 C 1.38130 * 119.70993 * 179.97438 * 4 3 2 6 6 C 1.38006 * 119.83758 * 0.15224 * 5 4 3 7 7 C 1.38915 * 120.65709 * 0.03540 * 6 5 4 8 8 C 1.37609 * 119.71282 * 359.67599 * 7 6 5 9 9 C 1.50628 * 122.57534 * 180.74799 * 8 7 6 10 10 C 1.52727 * 110.57668 * 341.88391 * 9 8 7 11 11 C 1.53321 * 108.38028 * 51.19225 * 10 9 8 12 12 H 1.09004 * 109.67647 * 49.97623 * 11 10 9 13 13 N 1.46901 * 109.67638 * 170.47215 * 11 10 9 14 14 C 1.46847 * 111.00327 * 187.58067 * 13 11 10 15 15 C 1.53037 * 109.52711 * 174.16750 * 14 13 11 16 16 C 1.53116 * 109.27838 * 59.17571 * 15 14 13 17 17 C 1.53120 * 109.16305 * 302.34712 * 16 15 14 18 18 H 1.08993 * 109.50212 * 297.71458 * 17 16 15 19 19 C 1.50699 * 109.50346 * 177.63482 * 17 16 15 20 20 H 1.07997 * 120.00234 * 240.00702 * 19 17 16 21 21 C 1.37875 * 120.00178 * 60.00135 * 19 17 16 22 22 N 1.31526 * 119.99821 * 0.02562 * 21 19 17 23 23 Si 1.86794 * 120.00453 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47384 * 90.00101 * 23 21 19 25 25 H 1.48502 * 109.47308 * 210.00175 * 23 21 19 26 26 H 1.48504 * 109.46748 * 329.99825 * 23 21 19 27 27 C 1.46849 * 110.99931 * 63.37315 * 13 11 10 28 28 C 1.50640 * 117.73597 * 179.29911 * 7 6 5 29 29 H 1.09004 * 109.47007 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47044 * 300.00429 * 1 2 3 31 31 H 1.08997 * 109.47077 * 60.00313 * 1 2 3 32 32 H 1.08005 * 120.14871 * 0.02562 * 4 3 2 33 33 H 1.08003 * 120.08154 * 180.14327 * 5 4 3 34 34 H 1.08000 * 119.67245 * 180.02562 * 6 5 4 35 35 H 1.08999 * 109.25689 * 102.17028 * 9 8 7 36 36 H 1.09003 * 109.25213 * 221.59864 * 9 8 7 37 37 H 1.09005 * 109.68191 * 170.91159 * 10 9 8 38 38 H 1.08998 * 109.68397 * 291.43072 * 10 9 8 39 39 H 1.09006 * 109.46355 * 294.18216 * 14 13 11 40 40 H 1.09001 * 109.46362 * 54.14351 * 14 13 11 41 41 H 1.08997 * 109.50317 * 179.12298 * 15 14 13 42 42 H 1.09003 * 109.50022 * 299.23637 * 15 14 13 43 43 H 1.09002 * 109.52252 * 62.25408 * 16 15 14 44 44 H 1.09001 * 109.52268 * 182.44217 * 16 15 14 45 45 H 0.96998 * 119.99868 * 180.02562 * 22 21 19 46 46 H 1.09005 * 109.46117 * 305.85827 * 27 13 11 47 47 H 1.08999 * 109.46468 * 65.81765 * 27 13 11 48 48 H 1.08997 * 109.24717 * 282.67533 * 28 7 6 49 49 H 1.08995 * 109.25515 * 42.10115 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2875 2.3694 -0.0006 5 6 1.9163 3.5993 -0.0001 6 6 3.2947 3.6658 -0.0021 7 6 4.0598 2.5063 -0.0054 8 6 3.4378 1.2787 0.0001 9 6 4.2036 -0.0183 0.0135 10 6 5.6491 0.2071 -0.4250 11 6 6.2333 1.3547 0.4072 12 1 6.0427 1.1748 1.4652 13 7 7.6808 1.4475 0.1743 14 6 8.2999 2.4160 1.0882 15 6 9.8203 2.3804 0.9178 16 6 10.1746 2.7203 -0.5325 17 6 9.4785 1.7263 -1.4662 18 1 9.8430 0.7194 -1.2627 19 6 9.7752 2.0889 -2.8985 20 1 8.9670 2.3315 -3.5726 21 6 11.0783 2.1112 -3.3483 22 7 12.0625 1.8154 -2.5275 23 14 11.4461 2.5614 -5.1235 24 1 11.6459 4.0290 -5.2308 25 1 12.6778 1.8604 -5.5670 26 1 10.3069 2.1526 -5.9840 27 6 7.9680 1.7809 -1.2267 28 6 5.5587 2.6553 -0.0238 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2090 2.3117 -0.0007 33 1 1.3306 4.5068 0.0017 34 1 3.7836 4.6288 -0.0013 35 1 4.1941 -0.4309 1.0223 36 1 3.7272 -0.7239 -0.6672 37 1 6.2293 -0.7003 -0.2574 38 1 5.6752 0.4695 -1.4826 39 1 7.9323 3.4166 0.8605 40 1 8.0434 2.1604 2.1163 41 1 10.2784 3.1103 1.5852 42 1 10.1902 1.3837 1.1588 43 1 9.8393 3.7318 -0.7619 44 1 11.2540 2.6537 -0.6689 45 1 12.9793 1.8315 -2.8438 46 1 7.4705 1.0641 -1.8800 47 1 7.6020 2.7844 -1.4437 48 1 5.8820 2.9107 -1.0329 49 1 5.8488 3.4540 0.6588 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256649319.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:27 Heat of formation + Delta-G solvation = -25.712582 kcal Electronic energy + Delta-G solvation = -27012.299432 eV Core-core repulsion = 23517.409304 eV Total energy + Delta-G solvation = -3494.890128 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.69981 -39.08144 -37.57696 -35.46932 -33.31635 -31.99040 -31.17451 -29.85334 -29.47710 -27.75410 -27.29597 -24.95221 -24.03265 -23.15170 -21.89930 -21.45858 -21.08199 -19.23178 -18.21179 -17.67542 -16.60482 -16.29572 -15.95278 -15.68940 -15.15204 -14.80632 -14.45117 -14.09369 -14.01869 -13.68688 -13.58914 -13.50605 -12.93786 -12.85429 -12.63543 -12.41154 -12.14056 -11.98001 -11.90883 -11.69469 -11.55138 -11.49328 -11.10289 -10.90900 -10.83580 -10.62514 -10.57437 -10.30857 -10.22349 -10.02550 -9.77568 -9.40413 -8.95751 -8.64626 -8.62074 -8.26453 -8.16869 -7.55169 -5.93882 -3.99821 1.27740 1.37542 3.11684 3.32874 3.39785 3.42929 3.66651 4.37976 4.52192 4.62677 4.71583 4.87678 4.89670 4.96400 5.07594 5.14809 5.15901 5.23488 5.33671 5.36116 5.47228 5.62561 5.65046 5.69409 5.75050 5.86903 5.92323 5.97932 6.02386 6.15763 6.16621 6.20091 6.33590 6.38199 6.44586 6.53877 6.55300 6.60069 6.66629 6.70640 6.77547 6.83042 7.04768 7.26988 7.28846 7.46028 7.73486 7.79679 7.89558 8.13747 8.22361 8.52744 9.04550 9.64361 11.12022 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.018846 B = 0.003137 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.390616 B = 8923.950768 C = 9302.494020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.124 3.876 4 C -0.218 4.218 5 C -0.086 4.086 6 C -0.158 4.158 7 C -0.026 4.026 8 C -0.103 4.103 9 C -0.068 4.068 10 C -0.111 4.111 11 C 0.088 3.912 12 H 0.076 0.924 13 N -0.530 5.530 14 C 0.062 3.938 15 C -0.117 4.117 16 C -0.111 4.111 17 C 0.055 3.945 18 H 0.033 0.967 19 C -0.513 4.513 20 H 0.053 0.947 21 C 0.063 3.937 22 N -0.889 5.889 23 Si 0.889 3.111 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.275 1.275 27 C 0.063 3.937 28 C -0.119 4.119 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.024 0.976 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.060 0.940 43 H 0.028 0.972 44 H 0.090 0.910 45 H 0.259 0.741 46 H 0.062 0.938 47 H 0.022 0.978 48 H 0.090 0.910 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.786 -0.056 8.051 22.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.079 3.921 4 C -0.237 4.237 5 C -0.104 4.104 6 C -0.176 4.176 7 C -0.027 4.027 8 C -0.104 4.104 9 C -0.105 4.105 10 C -0.148 4.148 11 C -0.021 4.021 12 H 0.095 0.905 13 N -0.252 5.252 14 C -0.066 4.066 15 C -0.155 4.155 16 C -0.149 4.149 17 C 0.036 3.964 18 H 0.052 0.948 19 C -0.552 4.552 20 H 0.071 0.929 21 C -0.138 4.138 22 N -0.527 5.527 23 Si 0.717 3.283 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.200 1.200 27 C -0.064 4.064 28 C -0.158 4.158 29 H 0.116 0.884 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.047 0.953 44 H 0.108 0.892 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.040 0.960 48 H 0.108 0.892 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.278 -0.743 8.152 21.868 hybrid contribution -0.547 1.463 -1.151 1.940 sum -20.825 0.720 7.001 21.982 Atomic orbital electron populations 1.23023 0.78797 1.03721 1.01151 1.86069 1.20948 1.27038 1.88703 1.19000 0.91816 0.84050 0.97258 1.21073 0.99624 0.92521 1.10468 1.20783 0.94524 0.96831 0.98257 1.21106 0.93730 0.98117 1.04682 1.19485 0.95738 0.91425 0.96050 1.19029 0.89973 0.95727 1.05631 1.20274 0.94706 0.93466 1.02047 1.21613 0.94003 0.99221 1.00011 1.21667 0.87935 0.93087 0.99388 0.90549 1.62263 1.07775 1.48884 1.06303 1.22026 0.96265 0.93070 0.95260 1.21675 0.93362 1.00847 0.99627 1.21655 1.04272 0.97975 0.90988 1.18657 0.87661 0.96106 0.93952 0.94844 1.21158 0.92164 1.46453 0.95440 0.92916 1.24928 0.96415 0.95273 0.97213 1.69897 0.99241 1.49043 1.34566 0.86652 0.77781 0.78395 0.85498 1.20837 1.21280 1.19970 1.22384 1.00583 0.97452 0.85977 1.21316 0.90261 1.00685 1.03513 0.88378 0.92858 0.92823 0.85821 0.86091 0.86145 0.90916 0.90581 0.90259 0.91438 0.95783 0.92552 0.93660 0.92121 0.95269 0.89178 0.93113 0.91986 0.95999 0.89202 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.59 9.52 -19.44 -0.19 -3.77 16 3 C 0.12 1.55 6.65 -39.08 -0.26 1.29 16 4 C -0.22 -2.39 9.02 -39.54 -0.36 -2.74 16 5 C -0.09 -0.94 10.04 -39.71 -0.40 -1.33 16 6 C -0.16 -1.94 9.60 -39.42 -0.38 -2.32 16 7 C -0.03 -0.36 5.74 -104.63 -0.60 -0.96 16 8 C -0.10 -1.39 5.75 -104.47 -0.60 -2.00 16 9 C -0.07 -0.87 5.28 -28.06 -0.15 -1.02 16 10 C -0.11 -1.60 4.85 -26.70 -0.13 -1.73 16 11 C 0.09 1.34 2.23 -67.69 -0.15 1.19 16 12 H 0.08 1.11 7.99 -51.93 -0.41 0.70 16 13 N -0.53 -9.59 4.63 -226.65 -1.05 -10.64 16 14 C 0.06 1.07 5.11 -3.83 -0.02 1.05 16 15 C -0.12 -2.29 6.09 -26.65 -0.16 -2.45 16 16 C -0.11 -2.62 5.02 -26.61 -0.13 -2.75 16 17 C 0.06 1.37 2.26 -91.69 -0.21 1.16 16 18 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 19 C -0.51 -14.06 8.57 -34.44 -0.30 -14.36 16 20 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 21 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 22 N -0.89 -25.42 11.35 55.43 0.63 -24.79 16 23 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 26 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 27 C 0.06 1.31 3.81 -3.83 -0.01 1.29 16 28 C -0.12 -1.72 4.34 -28.05 -0.12 -1.84 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.33 7.65 -51.93 -0.40 -0.07 16 31 H 0.05 0.34 7.65 -51.93 -0.40 -0.06 16 32 H 0.12 1.04 6.27 -52.48 -0.33 0.71 16 33 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 34 H 0.12 1.32 8.05 -52.49 -0.42 0.90 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.96 7.74 -51.93 -0.40 0.56 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.07 1.05 6.87 -51.93 -0.36 0.69 16 39 H 0.02 0.41 7.05 -51.93 -0.37 0.05 16 40 H 0.06 0.87 8.04 -51.93 -0.42 0.45 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 2.39 6.15 -51.93 -0.32 2.07 16 45 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.06 1.30 6.36 -51.93 -0.33 0.97 16 47 H 0.02 0.46 6.39 -51.93 -0.33 0.13 16 48 H 0.09 1.44 5.95 -51.93 -0.31 1.13 16 49 H 0.07 1.04 7.18 -51.93 -0.37 0.66 16 LS Contribution 366.29 15.07 5.52 5.52 Total: -1.00 -29.18 366.29 -11.28 -40.45 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -8.09 Total: 1.58 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: -3.08 Total: -24.67 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: -0.42 Total: -35.43 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: -0.19 Total: -3.77 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.18 -11.28 -40.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256649319.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.741 kcal (2) G-P(sol) polarization free energy of solvation -29.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds