Wall clock time and date at job start Tue Mar 31 2020 12:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35903 * 117.00016 * 2 1 4 4 C 1.38482 * 119.78283 * 0.24463 * 3 2 1 5 5 C 1.38131 * 119.70525 * 180.27774 * 4 3 2 6 6 C 1.38004 * 119.83248 * 359.66995 * 5 4 3 7 7 C 1.38912 * 120.66754 * 359.95698 * 6 5 4 8 8 C 1.37617 * 119.71259 * 0.22891 * 7 6 5 9 9 C 1.50623 * 122.59131 * 179.68154 * 8 7 6 10 10 C 1.52735 * 110.58955 * 17.57820 * 9 8 7 11 11 C 1.53319 * 108.37345 * 308.95143 * 10 9 8 12 12 H 1.08997 * 109.68692 * 310.17297 * 11 10 9 13 13 N 1.46906 * 109.68507 * 189.65573 * 11 10 9 14 14 C 1.46843 * 110.99964 * 301.66127 * 13 11 10 15 15 C 1.53036 * 109.52539 * 174.15900 * 14 13 11 16 16 C 1.53116 * 109.27759 * 59.17532 * 15 14 13 17 17 C 1.53117 * 109.16326 * 302.35226 * 16 15 14 18 18 H 1.09001 * 109.50182 * 297.66967 * 17 16 15 19 19 C 1.50696 * 109.50322 * 177.59645 * 17 16 15 20 20 H 1.08004 * 120.00128 * 275.02988 * 19 17 16 21 21 C 1.37879 * 120.00252 * 95.03031 * 19 17 16 22 22 N 1.31517 * 120.00061 * 184.68941 * 21 19 17 23 23 Si 1.86794 * 120.00109 * 4.69697 * 21 19 17 24 24 H 1.48503 * 109.47513 * 84.84026 * 23 21 19 25 25 H 1.48505 * 109.47292 * 204.84112 * 23 21 19 26 26 H 1.48502 * 109.46884 * 324.83777 * 23 21 19 27 27 C 1.46848 * 111.00092 * 177.45153 * 13 11 10 28 28 C 1.50639 * 117.73359 * 180.35981 * 7 6 5 29 29 H 1.09002 * 109.47639 * 59.99879 * 1 2 3 30 30 H 1.08999 * 109.47315 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47380 * 299.99970 * 1 2 3 32 32 H 1.07997 * 120.15011 * 0.04377 * 4 3 2 33 33 H 1.07999 * 120.08409 * 179.63791 * 5 4 3 34 34 H 1.08005 * 119.66622 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.25115 * 137.86847 * 9 8 7 36 36 H 1.09002 * 109.25133 * 257.32815 * 9 8 7 37 37 H 1.09001 * 109.68228 * 68.67502 * 10 9 8 38 38 H 1.09004 * 109.68247 * 189.19466 * 10 9 8 39 39 H 1.08997 * 109.46414 * 294.17374 * 14 13 11 40 40 H 1.09004 * 109.46439 * 54.13996 * 14 13 11 41 41 H 1.08993 * 109.50688 * 179.12267 * 15 14 13 42 42 H 1.09006 * 109.50221 * 299.23782 * 15 14 13 43 43 H 1.09004 * 109.52145 * 62.25761 * 16 15 14 44 44 H 1.09002 * 109.52580 * 182.37711 * 16 15 14 45 45 H 0.96997 * 120.00274 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.46026 * 305.85534 * 27 13 11 47 47 H 1.08993 * 109.46232 * 65.82145 * 27 13 11 48 48 H 1.09001 * 109.26014 * 77.19241 * 28 7 6 49 49 H 1.09008 * 109.22019 * 317.74521 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2873 2.3694 0.0051 5 6 1.9161 3.5993 -0.0007 6 6 3.2945 3.6657 -0.0047 7 6 4.0597 2.5063 -0.0020 8 6 3.4378 1.2787 -0.0001 9 6 4.2033 -0.0186 -0.0042 10 6 5.6520 0.2113 0.4215 11 6 6.2294 1.3516 -0.4252 12 1 6.0288 1.1637 -1.4800 13 7 7.6791 1.4453 -0.2065 14 6 7.9837 1.6718 1.2120 15 6 9.4983 1.6187 1.4247 16 6 10.1678 2.6920 0.5620 17 6 9.7953 2.4619 -0.9053 18 1 10.1741 1.4926 -1.2292 19 6 10.4021 3.5487 -1.7548 20 1 9.8857 4.4891 -1.8786 21 6 11.6167 3.3424 -2.3740 22 7 12.1903 4.3213 -3.0391 23 14 12.4473 1.6726 -2.2685 24 1 11.9116 0.7852 -3.3319 25 1 13.9120 1.8359 -2.4512 26 1 12.1786 1.0694 -0.9384 27 6 8.2721 2.4906 -1.0504 28 6 5.5586 2.6557 0.0017 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2089 2.3117 0.0098 33 1 1.3304 4.5067 -0.0026 34 1 3.7833 4.6288 -0.0096 35 1 3.7317 -0.7163 0.6877 36 1 4.1872 -0.4422 -1.0084 37 1 5.6859 0.4837 1.4764 38 1 6.2312 -0.6976 0.2583 39 1 7.6089 2.6502 1.5123 40 1 7.5051 0.8993 1.8141 41 1 9.7250 1.8023 2.4749 42 1 9.8719 0.6357 1.1376 43 1 9.8237 3.6778 0.8749 44 1 11.2498 2.6301 0.6781 45 1 13.0446 4.1762 -3.4750 46 1 8.0031 2.3128 -2.0916 47 1 7.8959 3.4652 -0.7395 48 1 5.8912 2.9189 1.0058 49 1 5.8419 3.4489 -0.6902 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256649326.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:49 Heat of formation + Delta-G solvation = -25.976609 kcal Electronic energy + Delta-G solvation = -26962.773234 eV Core-core repulsion = 23467.871656 eV Total energy + Delta-G solvation = -3494.901577 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -40.76964 -39.21774 -37.68867 -35.61628 -33.21994 -32.19744 -31.32464 -30.30477 -29.64560 -27.87092 -27.38236 -25.06253 -24.20130 -23.11471 -21.91529 -21.72360 -21.12690 -19.11409 -18.46873 -17.76933 -16.87636 -16.50481 -16.06011 -15.78772 -15.41477 -14.95032 -14.28329 -14.12297 -14.06932 -13.93673 -13.68387 -13.49950 -13.12026 -13.06435 -12.65294 -12.50473 -12.33012 -12.16605 -12.07854 -11.88905 -11.69355 -11.55259 -11.18514 -11.13220 -10.93610 -10.82350 -10.56232 -10.43652 -10.36137 -10.10618 -9.77587 -9.47787 -9.22504 -8.88316 -8.67426 -8.46473 -8.21612 -7.70079 -6.04032 -4.03154 1.22672 1.33110 3.06631 3.35203 3.42635 3.47283 3.61910 4.31789 4.47778 4.56628 4.65734 4.82665 4.85484 4.90932 4.94936 5.06912 5.08986 5.18174 5.26679 5.29147 5.39480 5.49891 5.55097 5.56020 5.61670 5.67039 5.81783 5.87012 5.94513 6.00474 6.05928 6.11870 6.12876 6.23687 6.32347 6.35652 6.40062 6.42479 6.50543 6.57219 6.60999 6.66604 6.74622 6.88388 6.96814 7.23725 7.36355 7.52081 7.64474 7.70380 7.92297 8.56985 9.00855 9.60107 11.09284 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.023539 B = 0.003054 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.214417 B = 9167.377530 C = 9496.287643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.123 3.877 4 C -0.217 4.217 5 C -0.085 4.085 6 C -0.157 4.157 7 C -0.027 4.027 8 C -0.104 4.104 9 C -0.068 4.068 10 C -0.111 4.111 11 C 0.087 3.913 12 H 0.084 0.916 13 N -0.533 5.533 14 C 0.056 3.944 15 C -0.121 4.121 16 C -0.112 4.112 17 C 0.021 3.979 18 H 0.038 0.962 19 C -0.511 4.511 20 H 0.070 0.930 21 C 0.071 3.929 22 N -0.903 5.903 23 Si 0.879 3.121 24 H -0.276 1.276 25 H -0.293 1.293 26 H -0.263 1.263 27 C 0.071 3.929 28 C -0.118 4.118 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.053 0.947 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.029 0.971 40 H 0.065 0.935 41 H 0.051 0.949 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.051 0.949 45 H 0.263 0.737 46 H 0.066 0.934 47 H 0.026 0.974 48 H 0.082 0.918 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.511 -7.415 8.749 25.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.078 3.922 4 C -0.236 4.236 5 C -0.103 4.103 6 C -0.175 4.175 7 C -0.028 4.028 8 C -0.105 4.105 9 C -0.105 4.105 10 C -0.149 4.149 11 C -0.022 4.022 12 H 0.102 0.898 13 N -0.256 5.256 14 C -0.072 4.072 15 C -0.158 4.158 16 C -0.150 4.150 17 C 0.001 3.999 18 H 0.057 0.943 19 C -0.549 4.549 20 H 0.088 0.912 21 C -0.130 4.130 22 N -0.541 5.541 23 Si 0.707 3.293 24 H -0.202 1.202 25 H -0.219 1.219 26 H -0.187 1.187 27 C -0.056 4.056 28 C -0.156 4.156 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.047 0.953 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.044 0.956 48 H 0.100 0.900 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.031 -8.009 8.494 24.933 hybrid contribution -0.254 0.365 0.174 0.478 sum -22.285 -7.644 8.669 25.104 Atomic orbital electron populations 1.23023 0.78750 1.03729 1.01198 1.86059 1.20990 1.27054 1.88721 1.18995 0.91799 0.84057 0.97311 1.21087 0.99658 0.92517 1.10348 1.20801 0.94544 0.96869 0.98085 1.21130 0.93743 0.98204 1.04425 1.19472 0.95693 0.91427 0.96190 1.18999 0.89979 0.95635 1.05895 1.20257 0.94423 0.93543 1.02270 1.21647 0.94470 0.99304 0.99466 1.21702 0.87523 0.92882 1.00086 0.89809 1.62324 1.08601 1.48385 1.06279 1.22082 0.96816 0.98808 0.89444 1.21685 0.94516 1.00829 0.98808 1.21864 0.99264 0.96497 0.97408 1.19144 0.90743 0.97492 0.92487 0.94340 1.20970 1.04704 1.00698 1.28571 0.91179 1.25053 0.96800 0.96542 0.94638 1.69914 1.17469 1.31805 1.34910 0.86825 0.78096 0.85061 0.79339 1.20203 1.21910 1.18737 1.22262 0.97147 0.90487 0.95728 1.21291 0.90284 1.01023 1.03026 0.92781 0.88378 0.92843 0.85788 0.86009 0.86004 0.90664 0.90719 0.91879 0.90379 0.95301 0.91684 0.93071 0.92055 0.93316 0.93070 0.92732 0.91545 0.95568 0.89961 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.39 9.54 -19.43 -0.19 -3.57 16 3 C 0.12 1.46 6.65 -39.08 -0.26 1.20 16 4 C -0.22 -2.28 9.02 -39.53 -0.36 -2.63 16 5 C -0.08 -0.90 10.04 -39.71 -0.40 -1.29 16 6 C -0.16 -1.86 9.60 -39.42 -0.38 -2.24 16 7 C -0.03 -0.35 5.74 -104.63 -0.60 -0.95 16 8 C -0.10 -1.33 5.75 -104.47 -0.60 -1.93 16 9 C -0.07 -0.79 5.27 -28.06 -0.15 -0.94 16 10 C -0.11 -1.38 4.65 -26.70 -0.12 -1.50 16 11 C 0.09 1.25 2.28 -67.68 -0.15 1.10 16 12 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 13 N -0.53 -9.05 4.67 -226.66 -1.06 -10.11 16 14 C 0.06 0.89 4.67 -3.84 -0.02 0.87 16 15 C -0.12 -2.08 6.09 -26.65 -0.16 -2.24 16 16 C -0.11 -2.36 5.27 -26.61 -0.14 -2.50 16 17 C 0.02 0.48 1.92 -91.70 -0.18 0.30 16 18 H 0.04 0.94 5.31 -51.93 -0.28 0.66 16 19 C -0.51 -14.18 8.86 -34.44 -0.31 -14.48 16 20 H 0.07 2.11 8.06 -52.48 -0.42 1.69 16 21 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 22 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 23 Si 0.88 21.83 26.98 -169.99 -4.59 17.25 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.26 -6.27 6.83 56.52 0.39 -5.89 16 27 C 0.07 1.42 4.26 -3.84 -0.02 1.40 16 28 C -0.12 -1.60 4.29 -28.05 -0.12 -1.72 16 29 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.31 7.64 -51.93 -0.40 -0.09 16 32 H 0.12 0.99 6.27 -52.49 -0.33 0.67 16 33 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.12 1.32 8.05 -52.48 -0.42 0.89 16 35 H 0.07 0.84 7.77 -51.93 -0.40 0.44 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.77 6.82 -51.93 -0.35 0.42 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.03 0.45 6.45 -51.93 -0.34 0.12 16 40 H 0.06 0.90 6.21 -51.93 -0.32 0.58 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 47 H 0.03 0.53 6.92 -51.93 -0.36 0.17 16 48 H 0.08 1.13 6.09 -51.93 -0.32 0.81 16 49 H 0.08 1.18 7.08 -51.92 -0.37 0.82 16 LS Contribution 365.69 15.07 5.51 5.51 Total: -1.00 -30.62 365.69 -10.69 -41.31 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -8.08 Total: 0.90 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -3.07 Total: -24.43 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: -0.28 Total: -36.96 kcal Atomic # 8 Polarization: -3.39 SS G_CDS: -0.19 Total: -3.57 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.59 Total: 17.25 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.62 -10.69 -41.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256649326.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.335 kcal (2) G-P(sol) polarization free energy of solvation -30.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds